BAC Information

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BAC

Clone NameB6Ng01-074G18
ChromosomeX (Build37)
Map Location 38,272,391 - 38,321,263
singlet/doubletdoublet
Overlap genenone
Upstream geneEG636756, EG636766, EG245391, LOC100039769
Downstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074G18.bB6Ng01-074G18.g
ACCDH891277DH891278
length9211,053
definitionDH891277|Mus musculus domesticus DNA, BAC clone: B6Ng01-074G18, 5' end.DH891278|Mus musculus domesticus DNA, BAC clone: B6Ng01-074G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,320,340 - 38,321,263)(38,272,391 - 38,273,316)
sequence
gaattccaacctatgagcctgtggggatctctctgatttaaaccaccaca
cactcttgtctccatgtacttctttcttctcatctcccccaacctccccc
cccacccccgctctctctcatgtactttcccttcctacccttctctttct
ttttcaggaactgtggaagcattcatagatactttgtgtttatgagtgca
atactcctaagataacctttcataactcttttcgccattctttggatcct
aaagtcgttctacccagagttccagtgttctctgggccttgaatgcgtat
gaaatatatatcctgcttgagatcaaacattcagagtcacttttttttca
aataaatgacctttacaggacatttttattcaaaccaccacaaccaattt
ctgtcattcttatagatacaaaacttttcaacaagatatttaagcacatt
agaaagctcagatattattttcatgttggtttcatctcaggtatagttta
acatacccaaattaataaatacaatatatatattgtatttatagtatata
tatatatatatacatgcacgtgcacacacacacatatatatatatacata
catacacacacacatacacatatatatcacttaatattaatacatattgg
aaagagattttcctccatcctaaggtactgaaaaacttaaggaattgcac
aataccacttatattgaataaggaaaaactgagaacatattctctaaaat
ttgtagtgagacaggtaccaaggttctcttacttggtaaagttgccaaaa
cccttaggtataatgacaatataaaatgtttaaaaaatataaatactaag
acttcaagttatctctttttatatgacacatcttttctctcctctttcct
ctctctctctctctctctctc
gaattctcaaatgtagaataaaaatagctaagagctatctcaaaaatgtt
cagtttctttattaaggaaatgtagatgaaagcaactttgatatttcatt
tcactggtatgagaatgactaagatcaccaaaacaactaacaacaaattc
tcgtaaagttgtgaagaagatgggaccctgtttgtagggtttcagcttga
tagagtcagtttgaaaataagtatacagaattcatcaaaaactagaaata
agtctacaatattaactagttatactgctcttggcatattccaaaaggac
tcaacaacctacttcatagatacttgcttaaccaggttcattgccatctt
gttggcaatatatgtgaaatttaaacaaaataaatatccttcaaattatg
aatagatagtaaaaattcagtgcatgtacacaacaagatactattcacct
gcaaaggaaaatggaatcatgaaatttacaagtagacatagacacagaaa
aacaaatgcatattctctttctctctctcatttatggttcctagctccaa
atcattagatgtaaatataaaatctggagtaacctcagaaaccaggaaat
taaaagggaccatgacagggaactagacagggggacatcaattacaataa
gaaagaggaagtggaaatatttggtgtctaattgaggaaggggttgggaa
tcatcacagaaagaaatggaagaatgacaaaaaatgcaaagaatgctttg
ataaagcttaaaggaataatattgttttgtatttaactaaaatgatatgt
agttcataatagtgtatgtatgaaatttatatgtattatgaagaaatgct
ctctacaaaagccatataatttctaaaaacaacaacaacaacaacaacaa
caaaaacattggtaccatatctaaaactttatttgccacaagaaattttc
tatagttgccctgcagctcacctagaaaatgcagaaatatatacttatct
atccatgactgtaccaaaagcaaaggttcttcctcataaaaaaaaaaatg
tca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_38320340_38321263
seq2: B6Ng01-074G18.b_42_962 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAAGAATGTGTC  50
      ||||||||||||||||||||||| ||||||| |||||||||| |||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAG-GAAAGAG-GAGAGAAAAG-ATGTGTC  47

seq1  ATATGAAAAGAGATAACTTGAAGTCTTAGTATTTATATTTTTTAAACATT  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAAGAGATAACTTGAAGTCTTAGTATTTATATTTTTTAAACATT  97

seq1  TTATATTGTCATTATACCTAAGGGTTTTGGCAACTTTACCAAGTAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGTCATTATACCTAAGGGTTTTGGCAACTTTACCAAGTAAGAGA  147

seq1  ACCTTGGTACCTGTCTCACTACAAATTTTAGAGAATATGTTCTCAGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTACCTGTCTCACTACAAATTTTAGAGAATATGTTCTCAGTTTT  197

seq1  TCCTTATTCAATATAAGTGGTATTGTGCAATTCCTTAAGTTTTTCAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATTCAATATAAGTGGTATTGTGCAATTCCTTAAGTTTTTCAGTAC  247

seq1  CTTAGGATGGAGGAAAATCTCTTTCCAATATGTATTAATATTAAGTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATGGAGGAAAATCTCTTTCCAATATGTATTAATATTAAGTGATA  297

seq1  TATATGTGTATGTGTGTGTGTATGTATGTATATATATATATGTGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTATGTGTGTGTGTATGTATGTATATATATATATGTGTGTGTG  347

seq1  TGCACGTGCATGTATATATATATATATATACTATAAATACAATATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTGCATGTATATATATATATATATACTATAAATACAATATATATA  397

seq1  TTGTATTTATTAATTTGGGTATGTTAAACTATACCTGAGATGAAACCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTATTAATTTGGGTATGTTAAACTATACCTGAGATGAAACCAAC  447

seq1  ATGAAAATAATATCTGAGCTTTCTAATGTGCTTAAATATCTTGTTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATAATATCTGAGCTTTCTAATGTGCTTAAATATCTTGTTGAAAA  497

seq1  GTTTTGTATCTATAAGAATGACAGAAATTGGTTGTGGTGGTTTGAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTATCTATAAGAATGACAGAAATTGGTTGTGGTGGTTTGAATAAA  547

seq1  AATGTCCTGTAAAGGTCATTTATTTGAAAAAAAAGTGACTCTGAATGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTGTAAAGGTCATTTATTTGAAAAAAAAGTGACTCTGAATGTTT  597

seq1  GATCTCAAGCAGGATATATATTTCATACGCATTCAAGGCCCAGAGAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAAGCAGGATATATATTTCATACGCATTCAAGGCCCAGAGAACAC  647

seq1  TGGAACTCTGGGTAGAACGACTTTAGGATCCAAAGAATGGCGAAAAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCTGGGTAGAACGACTTTAGGATCCAAAGAATGGCGAAAAGAGT  697

seq1  TATGAAAGGTTATCTTAGGAGTATTGCACTCATAAACACAAAGTATCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGGTTATCTTAGGAGTATTGCACTCATAAACACAAAGTATCTAT  747

seq1  GAATGCTTCCACAGTTCCTGAAAAAGAAAGAGAAGGGTAGGAAGGGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTCCACAGTTCCTGAAAAAGAAAGAGAAGGGTAGGAAGGGAAAG  797

seq1  TACATGAGAGAGAGCGGGGGTGGGGGGGGAGGTTGGGGGAGATGAGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGAGAGAGCGGGGGTGGGGGGGGAGGTTGGGGGAGATGAGAAGA  847

seq1  AAGAAGTACATGGAGACAAGAGTGTGTGGTGGTTTAAATCAGAGAGATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTACATGGAGACAAGAGTGTGTGGTGGTTTAAATCAGAGAGATCC  897

seq1  CCACAGGCTCATAGGTTGGAATTC  924
      ||||||||||||||||||||||||
seq2  CCACAGGCTCATAGGTTGGAATTC  921

seq1: chrX_38272391_38273316
seq2: B6Ng01-074G18.g_192_1121

seq1  ATCACCAAAACAACTAACAACAAATTCTCGTAAAGTTGTGAAGAAGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAAACAACTAACAACAAATTCTCGTAAAGTTGTGAAGAAGATGG  50

seq1  GACCCTGTTTGTAGGGTTTCAGCTTGATAGAGTCAGTTTGAAAATAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTTTGTAGGGTTTCAGCTTGATAGAGTCAGTTTGAAAATAAGTA  100

seq1  TACAGAATTCATCAAAAACTAGAAATAAGTCTACAATATTAACTAGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATTCATCAAAAACTAGAAATAAGTCTACAATATTAACTAGTTAT  150

seq1  ACTGCTCTTGGCATATTCCAAAAGGACTCAACAACCTACTTCATAGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTGGCATATTCCAAAAGGACTCAACAACCTACTTCATAGATAC  200

seq1  TTGCTTAACCAGGTTCATTGCCATCTTGTTGGCAATATATGTGAAATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAACCAGGTTCATTGCCATCTTGTTGGCAATATATGTGAAATTTA  250

seq1  AACAAAATAAATATCCTTCAAATTATGAATAGATAGTAAAAATTCAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATAAATATCCTTCAAATTATGAATAGATAGTAAAAATTCAGTGC  300

seq1  ATGTACACAACAAGATACTATTCACCTGCAAAGGAAAATGGAATCATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACAACAAGATACTATTCACCTGCAAAGGAAAATGGAATCATGAA  350

seq1  ATTTACAAGTAGACATAGACACAGAAAAACAAATGCATATTCTCTTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAGTAGACATAGACACAGAAAAACAAATGCATATTCTCTTTCTC  400

seq1  TCTCTCATTTATGGTTCCTAGCTCCAAATCATTAGATGTAAATATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATTTATGGTTCCTAGCTCCAAATCATTAGATGTAAATATAAAAT  450

seq1  CTGGAGTAACCTCAGAAACCAGGAAATTAAAAGGGACCATGACAGGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTAACCTCAGAAACCAGGAAATTAAAAGGGACCATGACAGGGAAC  500

seq1  TAGACAGGGGGACATCAATTACAATAAGAAAGAGGAAGTGGAAATATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGGGGGACATCAATTACAATAAGAAAGAGGAAGTGGAAATATTTG  550

seq1  GTGTCTAATTGAGGAAGGGGTTGGGAATCATCACAGAAAGAAATGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAATTGAGGAAGGGGTTGGGAATCATCACAGAAAGAAATGGAAGA  600

seq1  ATGACAAAAAATGCAAAGAATGC-TTGATAAAGCTTAAAGGAATAATATT  649
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGACAAAAAATGCAAAGAATGCTTTGATAAAGCTTAAAGGAATAATATT  650

seq1  GTTTTGTATTTAACTAAAATGATATGTAGTTCATAATAGTGTATGTATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTATTTAACTAAAATGATATGTAGTTCATAATAGTGTATGTATGA  700

seq1  AATTTATATGTATTATGAAG-AATGCTCTCTACAAAAGCCATATAATTTC  748
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATTTATATGTATTATGAAGAAATGCTCTCTACAAAAGCCATATAATTTC  750

seq1  TAAAAACAACAACAACAACAACAACAACAAAAAACATT-GTACCATATCT  797
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  TAAAAACAACAACAACAACAACAACAAC-AAAAACATTGGTACCATATCT  799

seq1  AAAACTTTATTTGCCACAAG-AATTTTCTAATAGTTGCACTGCAGCTCAA  846
      |||||||||||||||||||| |||||||| |||||||| |||||||||| 
seq2  AAAACTTTATTTGCCACAAGAAATTTTCT-ATAGTTGCCCTGCAGCTCAC  848

seq1  CTAGAAAATGCAGAAAATATATACTTATCTATCCATGACTGTACCAAAAG  896
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAATGCAG-AAATATATACTTATCTATCCATGACTGTACCAAAAG  897

seq1  CAAA-GTTC-TACTCA-ATAAAAAAAAATGTCA  926
      |||| |||| | |||| | ||||||||||||||
seq2  CAAAGGTTCTTCCTCATAAAAAAAAAAATGTCA  930