BAC Information

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BAC

Clone NameB6Ng01-075G11
ChromosomeX (Build37)
Map Location 13,683,001 - 13,843,076
singlet/doubletdoublet
Overlap geneEG385328
Upstream geneUsp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82, LOC385327
Downstream geneLOC668991, 4930403L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075G11.bB6Ng01-075G11.g
ACCDH891975DH891976
length1,2591,156
definitionDH891975|Mus musculus domesticus DNA, BAC clone: B6Ng01-075G11, 5' end.DH891976|Mus musculus domesticus DNA, BAC clone: B6Ng01-075G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,841,818 - 13,843,076)(13,683,001 - 13,683,795)
sequence
gaattcactctgagtgagcaaaatccaccataaaactctatcaatttaga
aatgtatttgaactatttaataacaaattataaaagaaaagccactcttt
cctcaacctgtaacactatggcatgactttgacacaagagaatgaaagaa
agctgagcactgtggggtacttaaccctaggacttcaactcccccaagac
aggagaaatgaactcttagcaaacttccttggaatccaagaggtaaaaat
atcatgagaacaaagcaccatttcatacctcatcagattttcctatcaca
cataccaaatgacagggagccaggtgggtccacacccattcctcattacc
actcctatctgaaatctcgttgcctagataccagaaccaacttgatttca
ctctaaagtgtttaggaatgcagcaatgctcttcacctttatctctcaca
tccgggaaaacaaagaatgaattattggcttaagaacacatagagtgaag
ggagcccaaaatgttgatggtcaagaattcaaagaaactctcaactggat
cataagttctggaaataacctgtggattggtgattagagctatactgaaa
taatcttgccatagctctgaatgctgtgaaatgtgctagtggcctttctt
aattctgctttaatcatcagtggcaatttggaacctctgaaaagtcaaat
aataggtaatcggtaaaagttaaaaggttccttatcgacatggataatgt
caagtttttgtctgaccactgccatataatgtagcaatgattagataggt
gtttttttgtttgtttgtttgtttatttgctttagtttcctgatagataa
agtgagtaggttatagaaaaaatatattacgttgcccattagactcatcc
atatacaatagtttgtacactgtttggttattagcattcattgtgttatt
tgtgtagctccaaaagctcattgtaattcaagttgtgatcagcaggtgac
acaatttgaaaagtgttagatatttagaggggagacccttaggtactgga
agtcttttcctagtccaccatcagtgttttcttccttactctagttgaat
aatgtaaaggccttttccaacttgcacacactcctgttcataaagtgttc
tccattcactacctactagaacaaacttgatacagtatatatgctcttaa
aattcaacatgagcctaaatttttttccctctataaaatctgttgcatct
tctttaaga
gaattctttattgtttctatttccatttttagatcctggatagctttgtt
cagttcctttgcctgtttggttgtgttttcctgaaattcttttagggatt
tttgtgtttcctctttaatgtcttctatgtgtttacccatgttctcttgt
atttccttaagggagttttttatgtccttcttaaattcctctatcatcat
tgtgagatgtgattttaaatcagagtcttgctttttgtgtgtgttggggt
aaccagggttcactgtggtgggagaactgggttctgatgatgccatgtag
ccttggtttctgttgcttatgttcttgcccttgcctctcaccatctggtt
atctctgctgttgtctggtcttgctgtctctgattgtggcttgtccctcc
tgcaagcttgtgtgtcagcactcctgggagagcagttctccccaggatga
atttgggtatggagatcttggtacagtgtcagctctgggatgcagacaga
taccagaaggatcttgtccctagctgatccttggttagtgtatcctgata
gctctgtgagtgtccctcttgggccacgaatttgaagagaagttatggtt
ttacctgggctcacaagtgtgtaggcagtcctgggagaccagctctctcc
tggcaacatttgtgtatgtagctctgtggcacaggaacagctctggatac
tggaagatggatactggaagactcctgtcccaagacagccccttggttcc
cgtgtcctgagctttctgggcaggttcctctgagcagcagtagtggtcct
acctgcactcacagtcctgtacacacttctgggaggctcactccctcctg
gcactatttggatatcttttagaggtaattctatggtgatcacagcagag
tgtgtaacactggagacagtcacttccatgggtcaacatcaccctgaaaa
taatctcttatctggaaatacagtctctgaggattattaaatgtgtaaag
acaacaaagattctgaaatttggcctttgactactttacaatttgctttc
cttaaatattttaatcctcacttatctattattagtcataatctgacagc
agttccttctctcttttctcctcccaggccttcttcccacatttcgttat
ctcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_13841818_13843076
seq2: B6Ng01-075G11.b_45_1303 (reverse)

seq1  TCTTAAA-AGGATGCAACAGA-TTTATAGAGAGAAAAAAAATATTTA-GC  47
      ||||||| | ||||||||||| ||||||||| |||||||   ||||| ||
seq2  TCTTAAAGAAGATGCAACAGATTTTATAGAGGGAAAAAA---ATTTAGGC  47

seq1  TCATTGTTTTGAGATTTTTAAGAGCATAGTACCTGTATCAAGTTTGTTCT  97
      ||| ||||    || |||||||||||||    ||||||||||||||||||
seq2  TCA-TGTT----GAATTTTAAGAGCATATATACTGTATCAAGTTTGTTCT  92

seq1  AGTAAGGTTAGTGAATGGAG-ACACTTTATG-ACAGGAGTGTGTGC-AGT  144
      ||||  | |||||||||||| |||||||||| |||||||||||||| |||
seq2  AGTA--GGTAGTGAATGGAGAACACTTTATGAACAGGAGTGTGTGCAAGT  140

seq1  TGGAAAAGGCC-TTACA-TATTCAACTAGAGT-AGGAAG-AAACACTGAT  190
      ||||||||||| ||||| |||||||||||||| |||||| ||||||||||
seq2  TGGAAAAGGCCTTTACATTATTCAACTAGAGTAAGGAAGAAAACACTGAT  190

seq1  TGTGGACTAGG-ATAGACTTCCAGTACCTAAGGGTCTCCCCTCTAAATAT  239
       |||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  GGTGGACTAGGAAAAGACTTCCAGTACCTAAGGGTCTCCCCTCTAAATAT  240

seq1  CTTAACACTTTTC-AATTGTGTCACCCTGCTGATCACAACTTGAATTACA  288
      | ||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  C-TAACACTTTTCAAATTGTGTCA-CCTGCTGATCACAACTTGAATTACA  288

seq1  ATGAGCTTTTGGAGCTACACAAATAACACAATGAATGCTAATAACCAAAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTTTGGAGCTACACAAATAACACAATGAATGCTAATAACCAAAC  338

seq1  AGTGTACAAACTATTGTATATGGATGAGTCTAATGGGCAACCTAATATAT  388
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTGTACAAACTATTGTATATGGATGAGTCTAATGGGCAACGTAATATAT  388

seq1  TTTTTCTATAACCTACTCACTTTATCTATCAGGAAACTAAAGCAAATAAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTATAACCTACTCACTTTATCTATCAGGAAACTAAAGCAAATAAA  438

seq1  CAAACAAACAAACAAAAAAACACCTATCTAATCATTGCTACATTATATGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAAAAAACACCTATCTAATCATTGCTACATTATATGG  488

seq1  CAGTGGTCAGACAAAAACTTGACATTATCCATGTCGATAAGGAACCTTTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCAGACAAAAACTTGACATTATCCATGTCGATAAGGAACCTTTT  538

seq1  AACTTTTACCGATTACCTATTATTTGACTTTTCAGAGGTTCCAAATTGCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTACCGATTACCTATTATTTGACTTTTCAGAGGTTCCAAATTGCC  588

seq1  ACTGATGATTAAAGCAGAATTAAGAAAGGCCACTAGCACATTTCACAGCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGATTAAAGCAGAATTAAGAAAGGCCACTAGCACATTTCACAGCA  638

seq1  TTCAGAGCTATGGCAAGATTATTTCAGTATAGCTCTAATCACCAATCCAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCTATGGCAAGATTATTTCAGTATAGCTCTAATCACCAATCCAC  688

seq1  AGGTTATTTCCAGAACTTATGATCCAGTTGAGAGTTTCTTTGAATTCTTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTTCCAGAACTTATGATCCAGTTGAGAGTTTCTTTGAATTCTTG  738

seq1  ACCATCAACATTTTGGGCTCCCTTCACTCTATGTGTTCTTAAGCCAATAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAACATTTTGGGCTCCCTTCACTCTATGTGTTCTTAAGCCAATAA  788

seq1  TTCATTCTTTGTTTTCCCGGATGTGAGAGATAAAGGTGAAGAGCATTGCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTTTGTTTTCCCGGATGTGAGAGATAAAGGTGAAGAGCATTGCT  838

seq1  GCATTCCTAAACACTTTAGAGTGAAATCAAGTTGGTTCTGGTATCTAGGC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCTAAACACTTTAGAGTGAAATCAAGTTGGTTCTGGTATCTAGGC  888

seq1  AACGAGATTTCAGATAGGAGTGGTAATGAGGAATGGGTGTGGACCCACCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGATTTCAGATAGGAGTGGTAATGAGGAATGGGTGTGGACCCACCT  938

seq1  GGCTCCCTGTCATTTGGTATGTGTGATAGGAAAATCTGATGAGGTATGAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTGTCATTTGGTATGTGTGATAGGAAAATCTGATGAGGTATGAA  988

seq1  ATGGTGCTTTGTTCTCATGATATTTTTACCTCTTGGATTCCAAGGAAGTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCTTTGTTCTCATGATATTTTTACCTCTTGGATTCCAAGGAAGTT  1038

seq1  TGCTAAGAGTTCATTTCTCCTGTCTTGGGGGAGTTGAAGTCCTAGGGTTA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGAGTTCATTTCTCCTGTCTTGGGGGAGTTGAAGTCCTAGGGTTA  1088

seq1  AGTACCCCACAGTGCTCAGCTTTCTTTCATTCTCTTGTGTCAAAGTCATG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCCACAGTGCTCAGCTTTCTTTCATTCTCTTGTGTCAAAGTCATG  1138

seq1  CCATAGTGTTACAGGTTGAGGAAAGAGTGGCTTTTCTTTTATAATTTGTT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTGTTACAGGTTGAGGAAAGAGTGGCTTTTCTTTTATAATTTGTT  1188

seq1  ATTAAATAGTTCAAATACATTTCTAAATTGATAGAGTTTTATGGTGGATT  1238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAGTTCAAATACATTTCTAAATTGATAGAGTTTTATGGTGGATT  1238

seq1  TTGCTCACTCAGAGTGAATTC  1259
      |||||||||||||||||||||
seq2  TTGCTCACTCAGAGTGAATTC  1259

seq1: chrX_13683001_13683795
seq2: B6Ng01-075G11.g_436_1223

seq1  TCTTGCTGTCTCTGATTGTGGCTTGTCCCTCCTGCAAGCTTGTGTGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGTCTCTGATTGTGGCTTGTCCCTCCTGCAAGCTTGTGTGTCAG  50

seq1  CACTCCTGGGAGAGCAGTTCTCCCCAGGATGAATTTGGGTATGGAGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGGGAGAGCAGTTCTCCCCAGGATGAATTTGGGTATGGAGATCT  100

seq1  TGGTACAGTGTCAGCTCTGGGATGCAGACAGATACCAGAAGGATCTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGTGTCAGCTCTGGGATGCAGACAGATACCAGAAGGATCTTGTC  150

seq1  CCTAGCTGATCCTTGGTTAGTGTATCCTGATAGCTCTGTGAGTGTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTGATCCTTGGTTAGTGTATCCTGATAGCTCTGTGAGTGTCCCTC  200

seq1  TTGGGCCACGAATTTGAAGAGAAGTTATGGTTTTACCTGGGCTCACAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCACGAATTTGAAGAGAAGTTATGGTTTTACCTGGGCTCACAAGT  250

seq1  GTGTAGGCAGTCCTGGGAGACCAGCTCTCTCCTGGCAACATTTGTGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGCAGTCCTGGGAGACCAGCTCTCTCCTGGCAACATTTGTGTATG  300

seq1  TAGCTCTGTGGCACAGGAACAGCTCTGGATACTGGAAGATGGATACTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGTGGCACAGGAACAGCTCTGGATACTGGAAGATGGATACTGGA  350

seq1  AGACTCCTGTCCCAAGACAGCCCCTTGGTTCCCGTGTCCTGAGCTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCTGTCCCAAGACAGCCCCTTGGTTCCCGTGTCCTGAGCTTTCTG  400

seq1  GGCAGGTTCCTCTGAGCAGCAGTAGTGGTCCTACCTGCACTCACAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTTCCTCTGAGCAGCAGTAGTGGTCCTACCTGCACTCACAGTCCT  450

seq1  GTACACACTTCTGGGAGGCTCACTCCCTCCTGGCACTATTTGGATATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACTTCTGGGAGGCTCACTCCCTCCTGGCACTATTTGGATATCTT  500

seq1  TTAGAGGTAATTCTATGGTGATCACAGCAGAGTGTGTAACACTGGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGTAATTCTATGGTGATCACAGCAGAGTGTGTAACACTGGAGACA  550

seq1  GTCACTTCCATGGGTCAACATCACCCTGAAAATAATCTCTTATCTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTCCATGGGTCAACATCACCCTGAAAATAATCTCTTATCTGGAAA  600

seq1  TACAGTCTCTGAGGATTATTAAATGTGTAAAGAACAACAAAGATTCTGAC  650
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TACAGTCTCTGAGGATTATTAAATGTGTAAAG-ACAACAAAGATTCTGAA  649

seq1  ATTT-GCCTTTGACTACTTTACATTTTTCTTTCCTTTAAAAATTATTTTA  699
      |||| |||||||||||||||||| ||| ||||||||    || |||||||
seq2  ATTTGGCCTTTGACTACTTTACAATTTGCTTTCCTT----AAATATTTTA  695

seq1  TATCTCATTTATCTATTTATTTAGTTCATATCTTGACAGCAAGTTTCCTC  749
         |||| |||||||||   |||| |||||   ||||||| |||| | ||
seq2  ATCCTCACTTATCTATT--ATTAG-TCATAATCTGACAGC-AGTTCCTTC  741

seq1  TCTCTCTTCTCCTCCCAGCCCTTCTCTCCAC-TTCCTTTATCTCACC  795
      ||||| |||||||||||| ||||||  |||| || | ||||||||||
seq2  TCTCTTTTCTCCTCCCAGGCCTTCTTCCCACATTTCGTTATCTCACC  788