BAC Information

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BAC

Clone NameB6Ng01-077B15
ChromosomeX (Build37)
Map Location 92,120,170 - 92,134,532
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik, EG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331, EG631319, Zxda
Downstream geneGm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077B15.bB6Ng01-077B15.g
ACCDH893165DH893166
length946426
definitionDH893165|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B15, 5' end.DH893166|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,133,601 - 92,134,532)(92,120,170 - 92,124,712)
sequence
gaattcacctgcctctgcctcccaagtactaggattaaaggcctctgcca
ccactgcctgacaaccctaaaactcttaaacctcaaaaataaaacactaa
aattataaaaacaaaaaaaacaactcaagaacactaaaaaaaacccaaaa
aaagttaaaccctaaaagaaaccataaagcctaaaaaatttagcccccaa
acctaacatacactaaaatcctttataaaaccggaaaaaacactaaatat
acactaagccctgaataccacaaaatactactaaaacactcttctaaaaa
ccataaaaaaccctttttaaaaacccctaagctgggcggtgatggcccac
acctttaaaaccagcacttgggaggcagaggcaggcaaatttctgagttc
aaagccagcctggtctagacagtgagttccaggacagccagggctacaca
gagaaaccctgtctcaaaaaaaagaagaaaaaaataaagagcaagcaaga
gacacagaaagaaacagcctaaacttttaaaaataaatgcataagaaccc
aaaaatgaccctaaaacattattttttgaaattttcaagactggggatct
ctatgtcaatgcctggctgtcctggaacccccggtggacacgaagctggc
cttgaacacagaaaagctcctgactctgtcaacccagtgctgggattaaa
ggcaggggtggatactgcctgatggccctaaaactcttgaaccccaaaaa
aaaaccctacccttacagaaaaactgcaagaacccttaaaaaggccctaa
aactaaccggtcaaccttataacctactcgatcctataaaaaacccctaa
acactaaaaaactttaaaaccagaaaaagtcacaacttgcacaaaaccct
gagatcgcataaaaccggaaacgctgctaaaacggaaaaaaccctt
ctgagttgggggctagcctggtttacagagtgagtcccaggacagtctgg
aatatacacagagtgagtcccaggacagtcagggatatacacagagaaag
ccagtcaggagaaactcaaaaaaaaaaaaagccttaaaattttagggtca
ttttttggttcttatgtatttatttttagaattttaggtgtttttggttt
gtttgtttgattgattgatttttttcgagaaagtgtttctctgtgtaacc
ctggctgtcctggaactcactctgtagaccaggctggcttcaaactcaga
aatttgcctgcctctgcccaccaagtgctggtattaaaggtgagtgccac
cagcgcccagcttaagggttttttaaacagggctttgtatggtttttaga
agagtgttgtagtggggtttttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_92133601_92134532
seq2: B6Ng01-077B15.b_44_985 (reverse)

seq1  GTTTTTTCCGTTTT--CATGGTTTTAGTGTATAT------TTAGTGTTT-  41
      ||||||||||||||  ||  ||||  |  | |||      | || |||| 
seq2  GTTTTTTCCGTTTTAGCAGCGTTTCCGGTTTTATGCGATCTCAGGGTTTT  50

seq1  --------------TTTTTCTTGGTTTTTAAAGTATTTTAGTGTTTTAGG  77
                    |||||||  | ||||||||| |||||||||||  ||
seq2  GTGCAAGTTGTGACTTTTTCT--GGTTTTAAAGTTTTTTAGTGTTTAGGG  98

seq1  CTTTTTTTTAGGCTATCGGGTTTGTTTTTAGGGTTTTACTGGGTTTTCTT  127
       |||||| ||||  |||| ||  ||| | |||  || || ||  ||  ||
seq2  GTTTTTTATAGG--ATCGAGTAGGTTATAAGG--TTGACCGG--TTAGTT  142

seq1  TTAGGGTCTTTTTAAGTGTTCTTGCATTTTTTTCTGTAATTTTAGGGTTT  177
      |||||| ||||||||| |||||||||  |||||||||||   ||||||||
seq2  TTAGGGCCTTTTTAAGGGTTCTTGCA-GTTTTTCTGTAAGGGTAGGGTTT  191

seq1  ATTTTTGGGGTTGAAGAGTTTTAGGGTTGTCAGGCAGTAGTGGCCCATGC  227
       ||||||||||| |||||||||||||   ||||||||||    ||| |||
seq2  TTTTTTGGGGTTCAAGAGTTTTAGGGCCATCAGGCAGTATCCACCCCTGC  241

seq1  CTTTAATCCCAGTACTTGGGAGACAGAGGCAGGAGATTTTCTGAGTTCGA  277
      |||||||||||| ||| ||  ||||||| |||||| ||||||| |||| |
seq2  CTTTAATCCCAGCACTGGGTTGACAGAGTCAGGAGCTTTTCTGTGTTCAA  291

seq1  GGCCAGCCTGGTATACAGAGTGAGTTCCAGGACAGCCAGGTATAGACATA  327
      ||||||| | || | ||  | | ||||||||||||||||| || ||||||
seq2  GGCCAGCTTCGTGTCCACCGGGGGTTCCAGGACAGCCAGGCATTGACATA  341

seq1  GAGAAACCCAGTCTCGAAAATTCAAAAAAATAATGTTTTAGGGTCATTTT  377
      ||||  |||||||| |||||||  ||||||||||||||||||||||||||
seq2  GAGATCCCCAGTCTTGAAAATTTCAAAAAATAATGTTTTAGGGTCATTTT  391

seq1  TGGGTTCTTATGCATTTATTTTTAAAAGTTTAGGCTGTTTCTTTCTGTGT  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTTATGCATTTATTTTTAAAAGTTTAGGCTGTTTCTTTCTGTGT  441

seq1  CTCTTGCTTGCTCTTTATTTTTTTCTTCTTTTTTTTGAGACAGGGTTTCT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTTGCTCTTTATTTTTTTCTTCTTTTTTTTGAGACAGGGTTTCT  491

seq1  CTGTGTAGCCCTGGCTGTCCTGGAACTCACTGTCTAGACCAGGCTGGCTT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCCCTGGCTGTCCTGGAACTCACTGTCTAGACCAGGCTGGCTT  541

seq1  TGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGTTTTAAAGG  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGTTTTAAAGG  591

seq1  TGTGGGCCATCACCGCCCAGCTTAGGGGTTTTTAAAAAGGGTTTTTTATG  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCCATCACCGCCCAGCTTAGGGGTTTTTAAAAAGGGTTTTTTATG  641

seq1  GTTTTTAGAAGAGTGTTTTAGTAGTATTTTGTGGTATTCAGGGCTTAGTG  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGAAGAGTGTTTTAGTAGTATTTTGTGGTATTCAGGGCTTAGTG  691

seq1  TATATTTAGTGTTTTTTTCCGGTTTTTTAAAGGATTTTAGTGTATGTTAG  727
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  TATATTTAGTG-TTTTTTCCGGTTTTATAAAGGATTTTAGTGTATGTTAG  740

seq1  GTTTGGGGGCTAAATTTTTTAGGCTTTATGGTTTCTTTTAGGGTTTAACT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGGCTAAATTTTTTAGGCTTTATGGTTTCTTTTAGGGTTTAACT  790

seq1  TTTTTTGGGTTTTTTTTAGTGTTCTTGAGTTGTTTTTTTTTTTTTTTTTA  827
      ||||||||||||||||||||||||||||||||   |||||||| ||||||
seq2  TTTTTTGGGTTTTTTTTAGTGTTCTTGAGTTG---TTTTTTTTGTTTTTA  837

seq1  TAATTTTAGTGTTTTATTTTTGAGGTTTAAGAGTTTTAGGGTTGTCAGGC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAGTGTTTTATTTTTGAGGTTTAAGAGTTTTAGGGTTGTCAGGC  887

seq1  AGTGGTGGCAGAGGCCTTTATTCCTAGTACTTGGGAGGCAGAGGCAGGTG  927
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTGGTGGCAGAGGCCTTTAATCCTAGTACTTGGGAGGCAGAGGCAGGTG  937

seq1  AATTC  932
      |||||
seq2  AATTC  942

seq1: chrX_92120170_92124712
seq2: B6Ng01-077B15.g_67_498

seq1  GAATTCCTGAGTTGGGGGCTAGCCTGGTTTACAGAGTGAGTCCCAGGACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTGGAATATACACAGAGTGAGTCCCAGGACAGTCAGGGATATACACAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAAGCCAGTCAGGAGAAACTCAAAAAAAAAAAAAAAAAAAACATAAAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTAGGGTCATTTTTTGGTTCTTATGTATTTATTTGTAGAATTTTAGGT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTTTTTTTGTTTGTTTGTTTGATTTTTTCGAGAAAGTGTTTCTCTGTG  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAACCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTCAAAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TCAGAAATTTGCCTGCCTCTGCCCACCAAGTGCTGGTATTAAAGGTGTGT  350
                                                        
seq2  --------------------------------------------------  0

seq1  GCCACCAGCACCCAGCTTAAGGGTTTTTTTAAACAGGGCTTTGTATGGTT  400
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAGAAGAGTGTTTTAGTGGGGTTTTTGTTTTTGGCTTTCAGGGTTTCA  450
                                                        
seq2  --------------------------------------------------  0

seq1  GTGTATATTTAGTGTTTTTTTTCTGGGTTTTTAAAGGATTTTAGCATATG  500
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGGGTTTGGGGCTTATTTTTAGGCCTTGGGTTTTTTTTCTTTTAGGGT  550
                                                        
seq2  --------------------------------------------------  0

seq1  TTTACTGTTATTTTTTAGGGTCTTTTCTAGTGTGATTGAGTTTTTTCTTT  600
                                                        
seq2  --------------------------------------------------  0

seq1  TAAATTTTAGGGTTTTATTTTTGGGGTTTAAGACTTTTGGGTTGTCAAGC  650
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGGTGGCCCATGCCTTTAATCCCAGTACTTGGAAGACAGAGGCAGGAG  700
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTCTGAGTTCGAGGCCATCCCGGTCTAGAGTGAGTTCTAGGATAGTC  750
                                                        
seq2  --------------------------------------------------  0

seq1  AGGGTTGTACACAGAGAAACCCAGTCTCAAAAACCAACACAAACAAACAA  800
                                                        
seq2  --------------------------------------------------  0

seq1  ACAAAAGTTTTAGGGTCATTTTAGGGTTCTTGTGCATTTATTTTTAGAAT  850
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAGGCTTTCTTCTCTCTTACTTTTTCTCTCTCTCTTTCTCCCTCTGTT  900
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTATTTATTCATTTTTTTTTTTTTTGGTCTTTTCTGAGACAGGGTTT  950
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTGTGTAGCCCTGGCTGTCCTAGACCTCAGTCTGTAGACCAGGCTGGC  1000
                                                        
seq2  --------------------------------------------------  0

seq1  CTGGAACTCAGTAATCTGCTTGCCTCTGCATCCCAAGTGCTGGTATTAAA  1050
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCTGTGCCACCACTGCCTGGCTAAGCACTTTTTAAAACGGGTTTTGTA  1100
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTTTTTAGTAGAGTGTTTTAGTGTTTTTTCGGTGTTCATGGATTTGGT  1150
                                                        
seq2  --------------------------------------------------  0

seq1  GTATATTTAGTGTTTTTTTCTTGGTATTTAAAGTATTTTAGTGTTTTAGG  1200
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTTTTTTAGGCTATCAGGTTTGTTTTTAGGGTTTTACTGGGTTTTCTT  1250
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGGGTCTTTTTAAGTGTTCTTGCGTTTTTTTCTGTAATTTTAGGGTTT  1300
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTTAGGGTTTAAGAGTTTTAGGGTTGTCAGACAGTAGTGGCCCATGC  1350
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTAATCCCAGTCCTTGGGAGTCAGAGGCAGGAGAGTTTCTGAGTTCTA  1400
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCAGACTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGTATAGACATA  1450
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAAACCCAGTCTCGAAAAATTCAAAAAAATAATGTTTTAGGGTCATTT  1500
                                                        
seq2  --------------------------------------------------  0

seq1  ATGGGTTCTTGTGCATTTATTTTTAAAAGTTTAGGCTGTTTCTCTCTGTG  1550
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTTGCTTGCTCTTTTTTTTTTCTTCTTTTTTTTTTTCTGAGACAGGG  1600
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTCTATGTAGCCCTGGCTGTCCTGGAACTCACTGTCTAGACCAGGCT  1650
                                                        
seq2  --------------------------------------------------  0

seq1  GGCTTTGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTTGTTTT  1700
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGGTATGGGCCATCACTGCCCACCTTAGGGGTTTTTAAAAAGGGTTTT  1750
                                                        
seq2  --------------------------------------------------  0

seq1  TTATGGTTTTTAGAAGAGTGTTTTAGTGGTATTTTGTGGTATTCAGGGCT  1800
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTGTATATTTAGTGTATTTTCCCGTTTTATAAATGATTTTAGAGTATG  1850
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGGTTTGAGGGCTATTTTTTTTAGGCTTTATGGTTTTTTTAGGGTTTA  1900
                                                        
seq2  --------------------------------------------------  0

seq1  ACTTTTTTTTGGGTCTTTTTTAGTGTTCTTGAGTTTTTTTTTTTTTTTTA  1950
                                                        
seq2  --------------------------------------------------  0

seq1  AATTTTAGTGTTTTATTTTTGAGGTTTAAGAGTTTTAGGGTTGTCAGGCA  2000
                                                        
seq2  --------------------------------------------------  0

seq1  GTGGTGGCAGAGGCCTTTAATCCTAGTACTTGGGAGGCAGAGGCAGGTGA  2050
                                                        
seq2  --------------------------------------------------  0

seq1  ATTCCTGAGTTGGGGGCTAGCCTGGTCTACAGAGTGAGTCCCAGGACAGT  2100
                                                        
seq2  --------------------------------------------------  0

seq1  CTGGAATATACACAGAGTGAGTCCCAGGACAGTCAGGGATATACACAGAG  2150
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGCCAGTCAGGAGAAACTCAAAAAAAAAAAAAAACCCTTAAAATTTTA  2200
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTCATTTTTTGGTTCTTATGTATTTATTTTTAGAATTTTAGGTGTATT  2250
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTTTGTTTGTTTGTTTGATTGATTTTTTTCGAGAAAGTGTTTCTCTGT  2300
                                                        
seq2  --------------------------------------------------  0

seq1  GTAACCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTCAAA  2350
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAGAAATTTGCCTGCCTCTGCCCACCAAGTGCTGGTATTAAAGGTGAG  2400
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCACCAGCACCCAGCTTAAGGGTTTTTTAAACAGGGCTTTGTATGGTT  2450
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAGAAGAGTGTTTTAGTGGGGTTTTTGTGTTTGGCTTTCACATTTAAA  2500
                                                        
seq2  --------------------------------------------------  0

seq1  TGTATATTCAATATTTTTTTTCTGGGTTTTTAAAGGATTTTAGCATGTGT  2550
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGGTTTGGGGCTTATTTTTAGGCCTTGGGTTTTTTTTCTTTTAGGGTT  2600
                                                        
seq2  --------------------------------------------------  0

seq1  TTACTGTTATTTTATAGGATCTTTTCTAGTGTGCTTGAGTTTTTTCTTTT  2650
                                                        
seq2  --------------------------------------------------  0

seq1  AAATTTTAGGGTTTTATTTTTGGGGTTTAAGAGTTTTAGGGTTGTCAAGC  2700
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGGTGGCCCATGCCTTTAATCCCAGTACTTGGAAGAGAGAGGCAGGAG  2750
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTCTGAGTTCGACGCCATCCCGGTCTACAGAGTGAGTTCTAGGATAG  2800
                                                        
seq2  --------------------------------------------------  0

seq1  TCAGGGTTGTACACAGAGAAACCCAGTCTCAAAAAACCAACACAAACAAA  2850
                                                        
seq2  --------------------------------------------------  0

seq1  CAAACAAAAGTTTTAGGGTCATTTTAGGGTTCTTGTGCATTTATTTTTAG  2900
                                                        
seq2  --------------------------------------------------  0

seq1  AATTTTAGGCTTTCTTCTCTCTTACTTTTTCTCTCTCTCTTTCTCCCTCT  2950
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTTTTATTTATTCTTTTTTTTTTTTTTTTTTTTTGATCTTTTCTGAG  3000
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGACCTCAGTCTGTAGAC  3050
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGCTGGCCTGGAACTCAGTAATCTGCTTGCCTCTGCCTCCCAAGTGCT  3100
                                                        
seq2  --------------------------------------------------  0

seq1  GGTATTAAACCCCTGTGCCACCACTGCCTGGCTAAGCGTTTTTTAAAAAG  3150
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTTTTTATGGTTTTTAGTAGTGTTTTCCTGTTTTTTCCGTTTTCATGG  3200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTAGTGTATATTTAGTGTTTTTTTTCTTGGTTTTTAAAGTATTTTAGT  3250
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTAGGCTTTTTTTTTAGGCTATCGGGTTTGTTTTTAGGGTTTTACTG  3300
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTTTCTTTTAGGGTCTTTTTAAGTGTTCTTGCATTTTTTTCTGTAATT  3350
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGGGTTTATTTTTGGGGTTTAAGAGTTTTAGGGTTGTCAGGCAGTAGT  3400
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCCATGCCTTTAATCCCAGTACTTGGGAGACAGAGGCAGGAGATTTTC  3450
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGTTCGAGGCCAGCCTGGTGTACAGAGTGAGTTCCAGGACAGCCAGGT  3500
                                                        
seq2  --------------------------------------------------  0

seq1  ATAGACATAGAGAAACCCAGTCTCGAAAATTCAAAAAAATAATGTTTTAG  3550
                                                        
seq2  --------------------------------------------------  0

seq1  GGTAATTTTTGGGTTCTTATGCATTTATTTTTAAAAGTTTAGGCTGTTTC  3600
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTGTGTCTCTTGCTTGCTCTTTATTTTTTTCTTCTTTTTTTTGAGAC  3650
                                                        
seq2  --------------------------------------------------  0

seq1  AGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTGTCTAGACCA  3700
                                                        
seq2  --------------------------------------------------  0

seq1  GGCTGGCTTTGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGG  3750
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTAAAGGTGTGGGCCATCACCGCCCAGCTTAGGGGTTTTTAAAAAGGG  3800
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTATGGTTTTTAGAAGAGTGTTTTAGTAGTATTTTGTGGTATTCAG  3850
                                                        
seq2  --------------------------------------------------  0

seq1  GGCTTAGTGTATATTTAGTATTTTTTCCGGTTTTTTAAAGGATTTTAGTG  3900
                                                        
seq2  --------------------------------------------------  0

seq1  TATGTTAGGTTTGGGGGCTAAATTTTTTAGGCTTTATGGTTTCTTTTAGG  3950
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTAACTTTTTTTGGGTTTTTTTTAGTGTTCTTGAGTTGTTTTTTTTTT  4000
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTTATAATTTTAGTGTTTTATTTTTGAGGTTTAAGAGTTTTAGGG  4050
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTCAGGCAGTGGTGGCACAGGCCTTTAATCCTAGTACTTGGGAGGCAG  4100
                                                        
seq2  --------------------------------------------------  0

seq1  AGGCAGGTGAATTCCTGAGTTGGGGGCTAGCCTGGTTTACAGAGTGAGTC  4150
              ||||||||||||||||||||||||||||||||||||||||||
seq2  --------GAATTCCTGAGTTGGGGGCTAGCCTGGTTTACAGAGTGAGTC  42

seq1  CCAGGACAGTCTGGAATATACACAGAGTGAGTCCCAGGACAGTCAGGGAT  4200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGTCTGGAATATACACAGAGTGAGTCCCAGGACAGTCAGGGAT  92

seq1  ATACACAGAGAAAGCCAGTCAGGAGAAACTCAAAAAAAAAAAAAAAAGCC  4250
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  ATACACAGAGAAAGCCAGTCAGGAGAAACTC---AAAAAAAAAAAAAGCC  139

seq1  TTAAAATTTTAGGGTCATTTTTTGGTTCTTATGTATTTATTTTTAGAATT  4300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTAGGGTCATTTTTTGGTTCTTATGTATTTATTTTTAGAATT  189

seq1  TTAGGTGTTTTTTGTTTGTTTGTTTGATTGATTGATTTTTTTCGAGAAAG  4350
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGTTTTTGGTTTGTTTGTTTGATTGATTGATTTTTTTCGAGAAAG  239

seq1  TGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGG  4400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGG  289

seq1  CTGGCTTCAAACTCAGAAATTTGCCTGCCTCTGCCCACCAAGTGCTGGTA  4450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCAAACTCAGAAATTTGCCTGCCTCTGCCCACCAAGTGCTGGTA  339

seq1  TTAAAGGTGAGTGCCACCAGCACCCAGCTTAAGGGTTTTTTAAACAGGGC  4500
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAAAGGTGAGTGCCACCAGCGCCCAGCTTAAGGGTTTTTTAAACAGGGC  389

seq1  TTTGTATGGTTTTTAGAAGAGTGTTGTAGTGGGGTTTTTGTGT  4543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGGTTTTTAGAAGAGTGTTGTAGTGGGGTTTTTGTGT  432