BAC Information

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BAC

Clone NameB6Ng01-077H15
ChromosomeX (Build37)
Map Location 26,640,740 - 26,678,762
singlet/doubletdoublet
Overlap geneEG664861
Upstream geneLOC100039030, LOC100039065, LOC100039078, LOC100039003, Slx, LOC100039120, LOC619914, LOC100039039, LOC619991, LOC664844, LOC100042154
Downstream geneLOC664866, LOC100042175, LOC100039194, LOC100039208, EG664877, LOC664881, LOC100039240, LOC100039248, LOC100039073, EG664890, LOC664898, LOC22526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077H15.bB6Ng01-077H15.g
ACCDH893438DH893439
length1,1131,090
definitionDH893438|Mus musculus domesticus DNA, BAC clone: B6Ng01-077H15, 5' end.DH893439|Mus musculus domesticus DNA, BAC clone: B6Ng01-077H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,640,740 - 26,641,862)(26,677,659 - 26,678,762)
sequence
gaattcagcagtttctccagaagcagtacagatcatagtcatcaccatga
tctccatcagaaatattaaaaaatagactctatcttgttactggtgacag
catccagctggtatgaccatgactgaaacctcttatctagtgacagaatg
aaaatggacataaaaaagtttataaatggcagaacacttatcatgaatgt
ggcagaattatacataattgacatcagtaattattctaattcagtacaag
actgtcatattaatttggtccaataatgctgcagggatcactgacatgat
tgctgctaaaggcctaaagtatcatggccatacattgtctcttgccagta
tatatgtgacctcaacaaaacatatctcagaacatttaactcaacatgac
ctgagggaacagtactgactgtgaagttcactgtaaattctgatggtttc
tgggatccttgacattaacaatatcttcagaagcaacatgaaatgtgggt
ttcaatatgctactgatggcagcatggataattgtgattgtcataatttc
tggagacactttggagagtcaggttctaatgagaaagattaatgtagaag
gaatagggaagaaggtaagataaactaagaatatctgcaaaagtcataaa
aatctcactactaacttcataaaatcctatacctcacataagctataagt
aaatgagcatgcacagtttaattagaactttacagtttcaatttacttta
ttaaaccaatgtatgcaattgtttatgtatcttttatttcaaattatata
acattttctatttatatatgttttgcttcaaataataaaattaggttcat
attactgctaaatattacccaaatatgcacgatgcttttgatgtggggat
ttattgatactgtatacatatagctaaaataataacagtaggttctccct
atgtcctatcacaccctgagctattgctttttggtcattttgcattaatg
agcatggatctctctggtgtagtgagtcttgattctataagagcttatat
ctattgactaagttactaattttcttattctgagtcaagggtgtttaggt
tccacctctgttt
gaattcatttttccattgtgtcatataaagaaaagcacagaggagtttta
gaaaagaaactgacttaatataaaattaatactgggtcaacgaaatactg
ttgcatgtacagaattttgtatacatatcacttagctttgaatacatgga
atgtagaaaagtttacatcatttttttcctctaaaaatcccttcaatgca
gttatgaaaatgcctcagtaataaatagggtttactgtgaaatgaggacg
ttcgcaagtttgattctagtacccatttagaaaactaaccatggatgttt
gcttctacaatagcagcactgtggtaggcagagtgagaattgctaggact
tgctggctgcttatctagctacatgttcagtgaaagagcaggtcttacgg
gaataaggtggaaagaaatagagcaaaacccaacatcctcctctgccctc
cacatgtgtatatatgcaccacagacagaaatatatgaaaaaaataaaat
taagtttaattaatgtcacacctgttgaaaaagcaccattttcacttctg
taccacaggcaaaaataagtccatgatgctaaatcaaaaatatttgcaag
agtccatgtcatgagtagttcttgggtgctgacctagtcccacaataccc
agagtaagctcaaatcccaggtgctctaacactcccaggatcacaggaat
ggccccaacatcaggagtaactgagtccctaaggatccagggacacagga
actcctgcctttccagttgcatggattccatctgttctgaaactgtacct
ggatcagacctggggtactggctttgcacccactcttaaaacacccagag
ggagcacgactctcaggtattctgaaatgctaaagatcacaggatcacag
aggaagctcgactcccaggagatcagacacacccaggaacactggagttc
tgacagagagcagagctgaggcacatatctttcccaacacctgtgtatct
gggaccctcacagatcaggtaacaatcatcctcctgcagagcacagttcc
ttgcagttatgcactgtgtttagagaaatcttaggctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_26640740_26641862
seq2: B6Ng01-077H15.b_44_1156

seq1  GAATTCAGCAGTTTCTCCAGAAGCAGTACAGATCATAGTCATCACCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGTTTCTCCAGAAGCAGTACAGATCATAGTCATCACCATGA  50

seq1  TCTCCATCAGAAATATTAAAAAATAGACTCTATCTTGTTACTGGTGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCAGAAATATTAAAAAATAGACTCTATCTTGTTACTGGTGACAG  100

seq1  CATCCAGCTGGTATGACCATGACTGAAACCTCTTATCTAGTGACAGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGCTGGTATGACCATGACTGAAACCTCTTATCTAGTGACAGAATG  150

seq1  AAAATGGACATAAAAAAGTTTATAAATGGCAGAACACTTATCATGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGACATAAAAAAGTTTATAAATGGCAGAACACTTATCATGAATGT  200

seq1  GGCAGAATTATACATAATTGACATCAGTAATTATTCTAATTCAGTACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATTATACATAATTGACATCAGTAATTATTCTAATTCAGTACAAG  250

seq1  ACTGTCATATTAATTTGGTCCAATAATGCTGCAGGGATCACTGACATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATATTAATTTGGTCCAATAATGCTGCAGGGATCACTGACATGAT  300

seq1  TGCTGCTAAAGGCCTAAAGTATCATGGCCATACATTGTCTCTTGCCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTAAAGGCCTAAAGTATCATGGCCATACATTGTCTCTTGCCAGTA  350

seq1  TATATGTGACCTCAACAAAACATATCTCAGAACATTTAACTCAACATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGACCTCAACAAAACATATCTCAGAACATTTAACTCAACATGAC  400

seq1  CTGAGGGAACAGTACTGACTGTGAAGTTCACTGTAAATTCTGATGGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAACAGTACTGACTGTGAAGTTCACTGTAAATTCTGATGGTTTC  450

seq1  TGGGATCCTTGACATTAACAATATCTTCAGAAGCAACATGAAATGTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCTTGACATTAACAATATCTTCAGAAGCAACATGAAATGTGGGT  500

seq1  TTCAATATGCTACTGATGGCAGCATGGATAATTGTGATTGTCATAATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATGCTACTGATGGCAGCATGGATAATTGTGATTGTCATAATTTC  550

seq1  TGGAGACACTTTGGAGAGTCAGGTTCTAATGAGAAAGATTAATGTAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACACTTTGGAGAGTCAGGTTCTAATGAGAAAGATTAATGTAGAAG  600

seq1  GAATAGGGAAGAAGGTAAGATAAACTAAGAATATCTGCAAAAGTCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGGAAGAAGGTAAGATAAACTAAGAATATCTGCAAAAGTCATAAA  650

seq1  AATCTCACTACTAACTTCATAAAATCCTATACCTCACATAAGCTATAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACTACTAACTTCATAAAATCCTATACCTCACATAAGCTATAAGT  700

seq1  AAATGAGCATGCACAGTTTAATTAGAACTTTACAGTTTCAATTTAC-TTA  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAATGAGCATGCACAGTTTAATTAGAACTTTACAGTTTCAATTTACTTTA  750

seq1  TTAAACCAATGTATGCAATTGTTTATGTATCTTTTATTTCAAATTATATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCAATGTATGCAATTGTTTATGTATCTTTTATTTCAAATTATATA  800

seq1  ACATTTTCTATTTATATATGTTTTGCTTCAAATAATAAAATTAGGTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTATTTATATATGTTTTGCTTCAAATAATAAAATTAGGTTCAT  850

seq1  ATTACTGCTAAATATTACCCAAATATGCACGATGCTTTTGATGTGGGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGCTAAATATTACCCAAATATGCACGATGCTTTTGATGTGGGGAT  900

seq1  TTATTGATACTGTATACATATAGCTAAAAATAATAACAGTAGGTTCTCCC  949
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  TTATTGATACTGTATACATATAGCT-AAAATAATAACAGTAGGTTCT-CC  948

seq1  CTATGTCCTATCACACCCTGAGCTATTGCTTTTTGGTCAATTTTGCATTA  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTATGTCCTATCACACCCTGAGCTATTGCTTTTTGGTC-ATTTTGCATTA  997

seq1  ATGAGCATGGTTCCTCTCCTGTGTAGTGAGTCTTGAATCTAATAAGAAGC  1049
      |||||||||| | |||||  |||||||||||||||| ||| ||||| |||
seq2  ATGAGCATGGAT-CTCTCTGGTGTAGTGAGTCTTGATTCT-ATAAG-AGC  1044

seq1  TTAATATCTATTGACTAAAGTTACTTAATTTTCTTATTCTGAGGTCAAGG  1099
      || ||||||||||||| ||||||| ||||||||||||||||| |||||||
seq2  TT-ATATCTATTGACT-AAGTTAC-TAATTTTCTTATTCTGA-GTCAAGG  1090

seq1  GTGTTTAGGTTCCACTCCCTGTTT  1123
      ||||||||||||||| | ||||||
seq2  GTGTTTAGGTTCCAC-CTCTGTTT  1113

seq1: chrX_26677659_26678762
seq2: B6Ng01-077H15.g_68_1157 (reverse)

seq1  CAGAGCCCTAGGTTTTCTCTAGACACAGTTGCAT-ACTGCAAGGAACCTG  49
      ||||| |||| | |||||||| |||||| ||||| ||||||||||| |||
seq2  CAGAG-CCTAAGATTTCTCTAAACACAG-TGCATAACTGCAAGGAA-CTG  47

seq1  TGCCTCTGGCCGGGAGGATGATTTTGTTTCCCTGGTTCTTGTGGGGGTCC  99
      || |||||  | |||||||||||    || |||| |   |||| ||||||
seq2  TG-CTCTG--CAGGAGGATGATT---GTTACCTGAT--CTGTGAGGGTCC  89

seq1  CAGATACACAGGGTGTTGGGAAAGATATTGTGCCCTCAGCTCTGCTCTTC  149
      |||||||||| |||||||||||||||| |||| |||||||||||||| ||
seq2  CAGATACACA-GGTGTTGGGAAAGATA-TGTG-CCTCAGCTCTGCTC-TC  135

seq1  TGTCAGAACTCCAGTGTTCCTGGGTGTGTCTGATCTCCTGGGAGTCGAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAACTCCAGTGTTCCTGGGTGTGTCTGATCTCCTGGGAGTCGAGC  185

seq1  TTCCTCTGTGATCCTGTGATCTTTAGCATTTCAGAATACCTGAGAGTCGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGTGATCCTGTGATCTTTAGCATTTCAGAATACCTGAGAGTCGT  235

seq1  GCTCCCTCTGGGTGTTTTAAGAGTGGGTGCAAAGCCAGTACCCCAGGTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTCTGGGTGTTTTAAGAGTGGGTGCAAAGCCAGTACCCCAGGTCT  285

seq1  GATCCAGGTACAGTTTCAGAACAGATGGAATCCATGCAACTGGAAAGGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGGTACAGTTTCAGAACAGATGGAATCCATGCAACTGGAAAGGCA  335

seq1  GGAGTTCCTGTGTCCCTGGATCCTTAGGGACTCAGTTACTCCTGATGTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCCTGTGTCCCTGGATCCTTAGGGACTCAGTTACTCCTGATGTTG  385

seq1  GGGCCATTCCTGTGATCCTGGGAGTGTTAGAGCACCTGGGATTTGAGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATTCCTGTGATCCTGGGAGTGTTAGAGCACCTGGGATTTGAGCTT  435

seq1  ACTCTGGGTATTGTGGGACTAGGTCAGCACCCAAGAACTACTCATGACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGTATTGTGGGACTAGGTCAGCACCCAAGAACTACTCATGACAT  485

seq1  GGACTCTTGCAAATATTTTTGATTTAGCATCATGGACTTATTTTTGCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTGCAAATATTTTTGATTTAGCATCATGGACTTATTTTTGCCTG  535

seq1  TGGTACAGAAGTGAAAATGGTGCTTTTTCAACAGGTGTGACATTAATTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGAAGTGAAAATGGTGCTTTTTCAACAGGTGTGACATTAATTAA  585

seq1  ACTTAATTTTATTTTTTTCATATATTTCTGTCTGTGGTGCATATATACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTTTATTTTTTTCATATATTTCTGTCTGTGGTGCATATATACAC  635

seq1  ATGTGGAGGGCAGAGGAGGATGTTGGGTTTTGCTCTATTTCTTTCCACCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGGGCAGAGGAGGATGTTGGGTTTTGCTCTATTTCTTTCCACCT  685

seq1  TATTCCCGTAAGACCTGCTCTTTCACTGAACATGTAGCTAGATAAGCAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCGTAAGACCTGCTCTTTCACTGAACATGTAGCTAGATAAGCAGC  735

seq1  CAGCAAGTCCTAGCAATTCTCACTCTGCCTACCACAGTGCTGCTATTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTCCTAGCAATTCTCACTCTGCCTACCACAGTGCTGCTATTGTA  785

seq1  GAAGCAAACATCCATGGTTAGTTTTCTAAATGGGTACTAGAATCAAACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACATCCATGGTTAGTTTTCTAAATGGGTACTAGAATCAAACTT  835

seq1  GCGAACGTCCTCATTTCACAGTAAACCCTATTTATTACTGAGGCATTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAACGTCCTCATTTCACAGTAAACCCTATTTATTACTGAGGCATTTTC  885

seq1  ATAACTGCATTGAAGGGATTTTTAGAGGAAAAAAATGATGTAAACTTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCATTGAAGGGATTTTTAGAGGAAAAAAATGATGTAAACTTTTC  935

seq1  TACATTCCATGTATTCAAAGCTAAGTGATATGTATACAAAATTCTGTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCATGTATTCAAAGCTAAGTGATATGTATACAAAATTCTGTACA  985

seq1  TGCAACAGTATTTCGTTGACCCAGTATTAATTTTATATTAAGTCAGTTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGTATTTCGTTGACCCAGTATTAATTTTATATTAAGTCAGTTTC  1035

seq1  TTTTCTTAAACTCCTCTGTGCTTTTCTTTATATGACACAATGGAAAAATG  1099
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAAACTCCTCTGTGCTTTTCTTTATATGACACAATGGAAAAATG  1085

seq1  AATTC  1104
      |||||
seq2  AATTC  1090