BAC Information

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BAC

Clone NameB6Ng01-078E16
ChromosomeX (Build37)
Map Location 159,361,482 - 159,489,518
singlet/doubletdoublet
Overlap geneCtps2, S100g
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078E16.bB6Ng01-078E16.g
ACCDH894029DH894030
length927193
definitionDH894029|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E16, 5' end.DH894030|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,361,482 - 159,362,408)(159,489,326 - 159,489,518)
sequence
gaggccactgtagagcctaaggcctgtaccagcgctccaagtctcttatt
ttgaggatttctctctgttgtaagttatatgtatgtgtgtacaagtgagt
acaggtgtggttgtgggttgtggatgtcagatctcccggagttggagtta
caggtggttttgagccatctgatgtggaaccggatctcagctcctctgta
acagtttatatactgttacctgctgagctgtctcttcagccccagtgagc
cagtcttggtttgcttttgcttttctttgaaacaaggtttcctgtagctc
aggctagcctcaagctctctatgtaactgagactgactttgaactcctga
ccctcctgctgctgcctcccatggtgtgggtcccagctttgtggtgccga
gtgagtaaacaactccatgctttctacttgtggaagttaccggtgcatat
agatgcagtgttttttttaaatgcatatgaatgcatgtttgcatgcatgt
gtgtacaccatatgcatgcctggtgcccagcctggccagaatagggtgtg
aaatcttctgagaccgaatcttctacaaatagttgtgagcttccattcag
gtcctaggaaccaaatttgggttctctggaagagcaccagttattgagcc
tttctttttctttctttcttttcttttttcttttttttttagacaaggtc
attgtagtatagaccagggtggcctcaatctcatgatttctcctgcctca
gtctcctaacaggcgactgacaacatgctttgcctgggatttaggtaagg
tttatttttttatttttatttttttgaggatgggtgtcactgattctctt
gcctctacttcacaaaagtgctgagattatagaactctaccaccctgtct
gcaatttttgggggtgggtgggtgttg
agccaaagagaagatcctctccagagatcgacactaaagaaaatccagaa
cgtttggcttcccccataggatgaaatggcaagacagtttatgaagccta
gttaaaccctcttttaggagactacagtattaaatttttaaaaattaatc
ctaaatgttattttaggggtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159361482_159362408
seq2: B6Ng01-078E16.b_56_982

seq1  GAGGCCACTGTAGAGCCTAAGGCCTGTACCAGCGCTCCAAGTCTCTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACTGTAGAGCCTAAGGCCTGTACCAGCGCTCCAAGTCTCTTATT  50

seq1  TTGAGGATTTCTCTCTGTTGTAAGTTATATGTATGTGTGTACAAGTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGATTTCTCTCTGTTGTAAGTTATATGTATGTGTGTACAAGTGAGT  100

seq1  ACAGGTGTGGTTGTGGGTTGTGGATGTCAGATCTCCCGGAGTTGGAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTGGTTGTGGGTTGTGGATGTCAGATCTCCCGGAGTTGGAGTTA  150

seq1  CAGGTGGTTTTGAGCCATCTGATGTGGAACCGGATCTCAGCTCCTCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTTTTGAGCCATCTGATGTGGAACCGGATCTCAGCTCCTCTGTA  200

seq1  ACAGTTTATATACTGTTACCTGCTGAGCTGTCTCTTCAGCCCCAGTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTATATACTGTTACCTGCTGAGCTGTCTCTTCAGCCCCAGTGAGC  250

seq1  CAGTCTTGGTTTGCTTTTGCTTTTCTTTGAAACAAGGTTTCCTGTAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTGGTTTGCTTTTGCTTTTCTTTGAAACAAGGTTTCCTGTAGCTC  300

seq1  AGGCTAGCCTCAAGCTCTCTATGTAACTGAGACTGACTTTGAACTCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCTCAAGCTCTCTATGTAACTGAGACTGACTTTGAACTCCTGA  350

seq1  CCCTCCTGCTGCTGCCTCCCATGGTGTGGGTCCCAGCTTTGTGGTGCCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGCTGCTGCCTCCCATGGTGTGGGTCCCAGCTTTGTGGTGCCGA  400

seq1  GTGAGTAAACAACTCCATGCTTTCTACTTGTGGAAGTTACCGGTGCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAAACAACTCCATGCTTTCTACTTGTGGAAGTTACCGGTGCATAT  450

seq1  AGATGCAGTGTTTTTTTTAAATGCATATGAATGCATGTTTGCATGCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGTGTTTTTTTTAAATGCATATGAATGCATGTTTGCATGCATGT  500

seq1  GTGTACACCATATGCATGCCTGGTGCCCAGCCTGGCCAGAATAGGGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACACCATATGCATGCCTGGTGCCCAGCCTGGCCAGAATAGGGTGTG  550

seq1  AAATCTTCTGAGACCGAATCTTCTACAAATAGTTGTGAGCTTCCATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCTGAGACCGAATCTTCTACAAATAGTTGTGAGCTTCCATTCAG  600

seq1  GTCCTAGGAACCAAATTTGGGTTCTCTGGAAGAGCACCAGTTATTGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGGAACCAAATTTGGGTTCTCTGGAAGAGCACCAGTTATTGAGCC  650

seq1  TTTCTTTTTCTTTCTTTCTTTTCTTTTTTCTTTTTTTTTTAGACAAGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCTTTCTTTCTTTTCTTTTTTCTTTTTTTTTTAGACAAGGTC  700

seq1  ATTGTAGTATAGACCAGGGTGGCCTCAATCTCATGA-TTCTCCTGCCTCA  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTGTAGTATAGACCAGGGTGGCCTCAATCTCATGATTTCTCCTGCCTCA  750

seq1  GTCTCCTAACAGGCGACTGACAACATGCTTTGCCTGGGATTTAGGTAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTAACAGGCGACTGACAACATGCTTTGCCTGGGATTTAGGTAAGG  800

seq1  TTTATTTTTTTATTTTTATTTTTTTGAGGATGGGTGTCACTGATTCTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTTATTTTTATTTTTTTGAGGATGGGTGTCACTGATTCTCTT  850

seq1  GCCTCTACTTCACAAAAGTGCTGAGATTATAGAACTCTACCACCCTGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTACTTCACAAAAGTGCTGAGATTATAGAACTCTACCACCCTGTCT  900

seq1  GCCACTTTTTGGGGGTGGGTGGGTGGTG  927
      | || |||||||||||||||||||| ||
seq2  G-CAATTTTTGGGGGTGGGTGGGTGTTG  927

seq1: chrX_159489326_159489518
seq2: B6Ng01-078E16.g_76_268 (reverse)

seq1  CACACACACACACACACACACACACCCCTAAAATAACATTTAGGATTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACCCCTAAAATAACATTTAGGATTAAT  50

seq1  TTTTAAAAATTTAATACTGTAGTCTCCTAAAAGAGGGTTTAACTAGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATTTAATACTGTAGTCTCCTAAAAGAGGGTTTAACTAGGCTT  100

seq1  CATAAACTGTCTTGCCATTTCATCCTATGGGGGAAGCCAAACGTTCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTGTCTTGCCATTTCATCCTATGGGGGAAGCCAAACGTTCTGGA  150

seq1  TTTTCTTTAGTGTCGATCTCTGGAGAGGATCTTCTCTTTGGCT  193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAGTGTCGATCTCTGGAGAGGATCTTCTCTTTGGCT  193