BAC Information

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BAC

Clone NameB6Ng01-078F11
ChromosomeX (Build37)
Map Location 48,513,682 - 48,664,991
singlet/doubletdoublet
Overlap geneMbnl3, LOC665866, LOC385356
Upstream geneEG665816, Olfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355
Downstream geneHs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078F11.bB6Ng01-078F11.g
ACCDH894064DH894065
length1,141365
definitionDH894064|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F11, 5' end.DH894065|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,513,682 - 48,514,838)(48,664,621 - 48,664,991)
sequence
gaattcttttacaggcatcacaagctagattcccatctgaaaatggtgca
gcattcatgtagttattggtgcagcccttcagcacaatgcacaatcaatc
cattctgatcatccttcctattttcatgacctcccctcattacgagggta
caataggacagtgtgtatacgtaggcaaagaaccatcatctctttgagca
gctagtactaatggaacacactcacacgcatgcacacaacacgcatgcac
acacatattcacacttatgcatgtgtgactcaaaaaaaccccacagccta
caaatcaaaggattgcttatttaaccactgataaaaaaaaacagtacaca
gataaattcaatggtgcttcaattatacaaattcaagaggaacaacgaat
gtgtcggcaataattaaggcacgttctctgtgtgttgtgaatatgatagg
agtacaatcagcataggtcaattatcctgatctcaggatagctttcatgc
atattttggataagaagcaatacagaaaaaagagaaagaaatacaaagct
tttatgcagacatgggactctgatgaatgtgctatctaaatggcaaatta
aataattatataaaaggctttgtatatttaaaatatttaattttcatgaa
aagaaattaaaactgtaggaattatgtaaatcattttatttagtctgact
gagcatcaagaaattaacacaatgcctgaatttaagagcaatggatccag
aagagaatacagcatatgaaaataattaagtgattttacttattgtcctc
aatgtgtttactttatagtaagcattcttttgcctttaatagaaacactg
acatgaagtctataaaagattagagaggtgtgtatctctctcactctatg
atgcctagaaagacagattctttagaccatgatgaattccctatcacaga
gtaaaccacagacactgatatatgtaaattgtagaactaaatcaccctca
ccacaatggatttgggcgcatgagcttgcagcattagtaataaatctact
aaatgggacctttttatagctctaaacaccctcattcattgtaagaagta
acctcatactgacttccttgtactatacttttgttcttgtt
aaatgagtttgaaatatgaatatttattgttaaaaagtggtaagtgtgtt
gtggtcacaccttcatgctctaattctttcaatgtctgtgtatttgaaaa
tttttacagtacaacattaaaaggggaggcagaatagatggcagagtgat
taagagcatacatagactgctcttgcagaaggccagagtttcatttccag
aactcatattgggcagcacacatagcctataactgcagttagaggggaac
tgatctgatgccttcttctagcctccaagggcaccaggcatctgcatctg
cattgcatttttgcacatgtgagctctctctctctctctctctctctctc
tctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_48513682_48514838
seq2: B6Ng01-078F11.b_46_1186

seq1  GAATTCTTTTACAGGCATCACAAGCTAGATTCCCATCTGAAAATGGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACAGGCATCACAAGCTAGATTCCCATCTGAAAATGGTGCA  50

seq1  GCATTCATGTAGTTATTGGTGCAGCCCTTCAGCACAATGCACAATCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATGTAGTTATTGGTGCAGCCCTTCAGCACAATGCACAATCAATC  100

seq1  CATTCTGATCATCCTTCCTATTTTCATGACCTCCCCTCATTACGAGGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGATCATCCTTCCTATTTTCATGACCTCCCCTCATTACGAGGGTA  150

seq1  CAATAGGACAGTGTGTATACGTAGGCAAAGAACCATCATCTCTTTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGACAGTGTGTATACGTAGGCAAAGAACCATCATCTCTTTGAGCA  200

seq1  GCTAGTACTAATGGAACACACTCACACGCATGCACACAACACGCATGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTACTAATGGAACACACTCACACGCATGCACACAACACGCATGCAC  250

seq1  ACACATATTCACACTTATGCATGTGTGACTCAAAAAAACCCCACAGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATTCACACTTATGCATGTGTGACTCAAAAAAACCCCACAGCCTA  300

seq1  CAAATCAAAGGATTGCTTATTTAACCACTGATAAAAAAAAACAGTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAAAGGATTGCTTATTTAACCACTGATAAAAAAAAACAGTACACA  350

seq1  GATAAATTCAATGGTGCTTCAATTATACAAATTCAAGAGGAACAACGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTCAATGGTGCTTCAATTATACAAATTCAAGAGGAACAACGAAT  400

seq1  GTGTCGGCAATAATTAAGGCACGTTCTCTGTGTGTTGTGAATATGATAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGGCAATAATTAAGGCACGTTCTCTGTGTGTTGTGAATATGATAGG  450

seq1  AGTACAATCAGCATAGGTCAATTATCCTGATCTCAGGATAGCTTTCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATCAGCATAGGTCAATTATCCTGATCTCAGGATAGCTTTCATGC  500

seq1  ATATTTTGGATAAGAAGCAATACAGAAAAAAGAGAAAGAAATACAAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGGATAAGAAGCAATACAGAAAAAAGAGAAAGAAATACAAAGCT  550

seq1  TTTATGCAGACATGGGACTCTGATGAATGTGCTATCTAAATGGCAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCAGACATGGGACTCTGATGAATGTGCTATCTAAATGGCAAATTA  600

seq1  AATAATTATATAAAAGGCTTTGTATATTTAAAATATTTAATTTTCATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTATATAAAAGGCTTTGTATATTTAAAATATTTAATTTTCATGAA  650

seq1  AAGAAATTAAAACTGTAGGAATTATGTAAATCATTTTATTTAGTCTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAAAACTGTAGGAATTATGTAAATCATTTTATTTAGTCTGACT  700

seq1  GAGCATCAAGAAATTAACACAATGCCTGAATTTAAGAGCAATGGATCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCAAGAAATTAACACAATGCCTGAATTTAAGAGCAATGGATCCAG  750

seq1  AAGAGAATACAGCATATGAAAATAATTAAGTGA-TTTACTTATTGTCCTC  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGAGAATACAGCATATGAAAATAATTAAGTGATTTTACTTATTGTCCTC  800

seq1  AATGTGTTTACTTTATAGTAAGCATTCTTTTGCCTTTAATAGAAACACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTTACTTTATAGTAAGCATTCTTTTGCCTTTAATAGAAACACTG  850

seq1  ACATGAAGTCTATAAAAGATTAGAGAGGTGTGTATCTCCCTCACTCTATG  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACATGAAGTCTATAAAAGATTAGAGAGGTGTGTATCTCTCTCACTCTATG  900

seq1  ATGCCTAGAAAGACAGATTCTTTAGACCATGATGAATTCCCTATCACAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAGAAAGACAGATTCTTTAGACCATGATGAATTCCCTATCACAGA  950

seq1  GTAAACCACAGAACACTGATATATGTAAATTGTAGAACTAAAATCACCCT  999
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  GTAAACCACAG-ACACTGATATATGTAAATTGTAGAACT-AAATCACCCT  998

seq1  CACCACAATGGATTTGGGCGCATGAGCTTGCAGCATTAAGTAATAAATTC  1049
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  CACCACAATGGATTTGGGCGCATGAGCTTGCAGCATT-AGTAATAAA-TC  1046

seq1  TACCTAAATGGGACCCTTTTTAATAGCTCCTAAAACCAACACTCCATTCA  1099
      || ||||||||||||  |||| |||||||  || |||    || ||||||
seq2  TA-CTAAATGGGACC--TTTTTATAGCTCTAAACACC----CT-CATTCA  1088

seq1  TTGTAAGAAGTTAACCTCATACTTGACTCACTTTGTACCTATACTTTTGT  1149
      |||||||||| ||||||||||| |||||  | ||||| ||||||||||| 
seq2  TTGTAAGAAG-TAACCTCATAC-TGACT-TCCTTGTA-CTATACTTTTG-  1133

seq1  TTCTTGTT  1157
      ||||||||
seq2  TTCTTGTT  1141

seq1: chrX_48664621_48664991
seq2: B6Ng01-078F11.g_70_440 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCACATG  50

seq1  TGCAAAAATGCAATGCAGATGCAGATGCCTGGTGCCCTTGGAGGCTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAATGCAATGCAGATGCAGATGCCTGGTGCCCTTGGAGGCTAGAA  100

seq1  GAAGGCATCAGATCAGTTCCCCTCTAACTGCAGTTATAGGCTATGTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATCAGATCAGTTCCCCTCTAACTGCAGTTATAGGCTATGTGTGC  150

seq1  TGCCCAATATGAGTTCTGGAAATGAAACTCTGGCCTTCTGCAAGAGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAATATGAGTTCTGGAAATGAAACTCTGGCCTTCTGCAAGAGCAGT  200

seq1  CTATGTATGCTCTTAATCACTCTGCCATCTATTCTGCCTCCCCTTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATGCTCTTAATCACTCTGCCATCTATTCTGCCTCCCCTTTTAAT  250

seq1  GTTGTACTGTAAAAATTTTCAAATACACAGACATTGAAAGAATTAGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACTGTAAAAATTTTCAAATACACAGACATTGAAAGAATTAGAGCA  300

seq1  TGAAGGTGTGACCACAACACACTTACCACTTTTTAACAATAAATATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGTGACCACAACACACTTACCACTTTTTAACAATAAATATTCAT  350

seq1  ATTTCAAACTCATTTGAATTC  371
      |||||||||||||||||||||
seq2  ATTTCAAACTCATTTGAATTC  371