BAC Information

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BAC

Clone NameB6Ng01-078K10
ChromosomeX (Build37)
Map Location 34,633,912 - 34,669,491
singlet/doubletdoublet
Overlap geneUpf3b, 2610020O08Rik
Upstream geneIl13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1, B230333C21Rik, LOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39
Downstream geneAkap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078K10.bB6Ng01-078K10.g
ACCDH894290DH894291
length1,0791,095
definitionDH894290|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K10, 5' end.DH894291|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,668,398 - 34,669,491)(34,633,912 - 34,635,006)
sequence
gaattccttaaagtttgatggcttatgactcacttttaaaagttactact
gggctggagagatggctcagtggttaagagcactgactgctcttccgaag
gtcctgagttcaaaacccagcaaccacatggtggctcacaaccatctgca
atgtgatctgacgctcttgtctggtgtgtctgaagacaactacagtgtac
tcatatacataaaataaataaatctttaaaaaaaaagttactacgaaaga
cctataattggcttttcttttttttaacatttttgatcatgaaaaagggt
attgataactacacagagagagacttggagaattttgtatttggccaaaa
tggataatttagaaaaggggtacaactgtttgtggcttctgggggaagaa
tgcctgcccagccataaagagcacagaagtctcatgtctattgctcctgt
aatatgttaaaatttcttattttaaaacacaaagtctaaggcctagtacc
atgcctaagacataattttaatagacagaataaacttcatatcacctaaa
agtacaaatgcaaatctcatccaatcacttaacattccagtaaatccttt
actcctctgaaactggatctcataggacagggtctagctagtcttcaact
cctagtggttctgaccctctctcaagtgttgggattagagacatgatcct
ggctcagcatttgcttttcaactgacacactccatgggtaccatcccaga
ggtctctaacagatcaggactgtttcacttatggatgttattacaccctt
aaaagccttgttactgatttccctgtcccttgtgggccgctgctccaact
cggggcctcgggtttgctaggcaagcattcttcccctgagctcagctcca
gcttctgcggatttttaatgatgagaagcgaagctaggaaaggtctcact
tgcccaagaccatcctgcttcaccacaacaaaccttcacacctcaggcag
gcatgcggaaactgccctttttttcttatactgtattcttccctgctggg
gagaaaaaaacatgagcatctctcactgt
gaattcttgcctaactagatttgggtttgatccctagcaaaaaagaaaag
atctgcttgccttacagaaacccacctgcttctgcccctgcgttctggga
ttacaggtatacaccatgcctagccttaaaaaaaaaaaagatttattttt
ccttattatttttttaactgtgtggggaagtagtatgcatgtgtatctat
aagtacatgcagttgcccacagtgactggagttatatatgtctgtgagct
gcctgacatgggtactagcaattgaaaaaataaaaaatattcacccctta
actgctaagccatctctccagccccaagtgttgttattgatacagggtct
ctttacatagccccgactgtccttggattcaagtaaatagaccaggctgt
cctccagagatcctcctccatctgcctcccaagtgctaggataaaagctg
tgtcctgccatgcaagctaggccagcacttttaactactgagaaacacac
tcaaccccaagctcatttttatatattacccatgtctatttccttaaaga
atttagctgttgtgacagagactatatggctcagatagcctaaaatatta
gcagctgtttttccaagattttgactattattttcatttaaaaaattgtt
taattataaatttttaatgctgtgttttgaacctatggttccatttatgc
tgttgtctatgacagtactagtgcttaagtagtaattataaaagaaacag
aatatatatgttcaatgagataaagaagttataatttgccaatgtacagt
ctgagaagattcataggacaaactggtttctacaacaaacatttatgtat
cagggaaaaaaaaagattgtttagatcaaaatagaattccaccacacact
atgaacattgtttcatggccctatttaaaaagacattaatgatgcaactg
ggaaacctctcactaggaataattaggatagtaagaaattaccttttgaa
gctgggcaggtggggcatgctgctatctcagccattcaggagcagaggca
gcgaactcctgtgagattcaggtaatctggtcaacaaatgagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_34668398_34669491
seq2: B6Ng01-078K10.b_44_1122 (reverse)

seq1  ACAGTTGAGAGATGCTTCATGTTTTTTTTTCCTCCCCCAGCAGGGGAAGA  50
      |||| |||||||||| |||||||||||| |    |||||||| |||||| 
seq2  ACAG-TGAGAGATGC-TCATGTTTTTTTCT----CCCCAGCA-GGGAAG-  42

seq1  AATACAGTATAAGAAAAAAAAAGGGCAAGTTTCCGCATTGCCCTGCCTGA  100
      |||||||||||||  ||||||||||| |||||||||||   |||||||||
seq2  AATACAGTATAAG--AAAAAAAGGGC-AGTTTCCGCAT--GCCTGCCTGA  87

seq1  -GTGTGAAGGTTTTGTTTGTGGTGAAGCAGGATGGTCTTGGGCAAGTGAG  149
       ||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  GGTGTGAAGGTTT--GTTGTGGTGAAGCAGGATGGTCTTGGGCAAGTGAG  135

seq1  ACCTTTCCTAGCTTCGCTTCTTCATCATTAAAAATCCGCAGAAGCTGGAG  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCTTTCCTAGCTTCGCTTC-TCATCATTAAAAATCCGCAGAAGCTGGAG  184

seq1  CTGAGCTCAGGGGAAGAATGCTTGCCTAGCAAACCCGAGGCCCCGAGTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCAGGGGAAGAATGCTTGCCTAGCAAACCCGAGGCCCCGAGTTG  234

seq1  GAGCAGCGGCCCACAAGGGACAGGGAAATCAGTAACAAGGCTTTTAAGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCGGCCCACAAGGGACAGGGAAATCAGTAACAAGGCTTTTAAGGG  284

seq1  TGTAATAACATCCATAAGTGAAACAGTCCTGATCTGTTAGAGACCTCTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAACATCCATAAGTGAAACAGTCCTGATCTGTTAGAGACCTCTGG  334

seq1  GATGGTACCCATGGAGTGTGTCAGTTGAAAAGCAAATGCTGAGCCAGGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTACCCATGGAGTGTGTCAGTTGAAAAGCAAATGCTGAGCCAGGAT  384

seq1  CATGTCTCTAATCCCAACACTTGAGAGAGGGTCAGAACCACTAGGAGTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCTAATCCCAACACTTGAGAGAGGGTCAGAACCACTAGGAGTTG  434

seq1  AAGACTAGCTAGACCCTGTCCTATGAGATCCAGTTTCAGAGGAGTAAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAGCTAGACCCTGTCCTATGAGATCCAGTTTCAGAGGAGTAAAGG  484

seq1  ATTTACTGGAATGTTAAGTGATTGGATGAGATTTGCATTTGTACTTTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGGAATGTTAAGTGATTGGATGAGATTTGCATTTGTACTTTTAG  534

seq1  GTGATATGAAGTTTATTCTGTCTATTAAAATTATGTCTTAGGCATGGTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATGAAGTTTATTCTGTCTATTAAAATTATGTCTTAGGCATGGTAC  584

seq1  TAGGCCTTAGACTTTGTGTTTTAAAATAAGAAATTTTAACATATTACAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTAGACTTTGTGTTTTAAAATAAGAAATTTTAACATATTACAGG  634

seq1  AGCAATAGACATGAGACTTCTGTGCTCTTTATGGCTGGGCAGGCATTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGACATGAGACTTCTGTGCTCTTTATGGCTGGGCAGGCATTCTT  684

seq1  CCCCCAGAAGCCACAAACAGTTGTACCCCTTTTCTAAATTATCCATTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAAGCCACAAACAGTTGTACCCCTTTTCTAAATTATCCATTTTG  734

seq1  GCCAAATACAAAATTCTCCAAGTCTCTCTCTGTGTAGTTATCAATACCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATACAAAATTCTCCAAGTCTCTCTCTGTGTAGTTATCAATACCCT  784

seq1  TTTTCATGATCAAAAATGTTAAAAAAAAGAAAAGCCAATTATAGGTCTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGATCAAAAATGTTAAAAAAAAGAAAAGCCAATTATAGGTCTTT  834

seq1  CGTAGTAACTTTTTTTTTAAAGATTTATTTATTTTATGTATATGAGTACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTAACTTTTTTTTTAAAGATTTATTTATTTTATGTATATGAGTACA  884

seq1  CTGTAGTTGTCTTCAGACACACCAGACAAGAGCGTCAGATCACATTGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTGTCTTCAGACACACCAGACAAGAGCGTCAGATCACATTGCAG  934

seq1  ATGGTTGTGAGCCACCATGTGGTTGCTGGGTTTTGAACTCAGGACCTTCG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAGCCACCATGTGGTTGCTGGGTTTTGAACTCAGGACCTTCG  984

seq1  GAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAGTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAGTAG  1034

seq1  TAACTTTTAAAAGTGAGTCATAAGCCATCAAACTTTAAGGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTAAAAGTGAGTCATAAGCCATCAAACTTTAAGGAATTC  1079

seq1: chrX_34633912_34635006
seq2: B6Ng01-078K10.g_69_1163

seq1  GAATTCTTGCCTAACTAGATTTGGGTTTGATCCCTAGCAAAAAAGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCTAACTAGATTTGGGTTTGATCCCTAGCAAAAAAGAAAAG  50

seq1  ATCTGCTTGCCTTACAGAAACCCACCTGCTTCTGCCCCTGCGTTCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTGCCTTACAGAAACCCACCTGCTTCTGCCCCTGCGTTCTGGGA  100

seq1  TTACAGGTATACACCATGCCTAGCCTTAAAAAAAAAAAAGATTTATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTATACACCATGCCTAGCCTTAAAAAAAAAAAAGATTTATTTTT  150

seq1  CCTTATTATTTTTTTAACTGTGTGGGGAAGTAGTATGCATGTGTATCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTATTTTTTTAACTGTGTGGGGAAGTAGTATGCATGTGTATCTAT  200

seq1  AAGTACATGCAGTTGCCCACAGTGACTGGAGTTATATATGTCTGTGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATGCAGTTGCCCACAGTGACTGGAGTTATATATGTCTGTGAGCT  250

seq1  GCCTGACATGGGTACTAGCAATTGAAAAAATAAAAAATATTCACCCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACATGGGTACTAGCAATTGAAAAAATAAAAAATATTCACCCCTTA  300

seq1  ACTGCTAAGCCATCTCTCCAGCCCCAAGTGTTGTTATTGATACAGGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAAGCCATCTCTCCAGCCCCAAGTGTTGTTATTGATACAGGGTCT  350

seq1  CTTTACATAGCCCCGACTGTCCTTGGATTCAAGTAAATAGACCAGGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATAGCCCCGACTGTCCTTGGATTCAAGTAAATAGACCAGGCTGT  400

seq1  CCTCCAGAGATCCTCCTCCATCTGCCTCCCAAGTGCTAGGATAAAAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAGATCCTCCTCCATCTGCCTCCCAAGTGCTAGGATAAAAGCTG  450

seq1  TGTCCTGCCATGCAAGCTAGGCCAGCACTTTTAACTACTGAGAAACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGCCATGCAAGCTAGGCCAGCACTTTTAACTACTGAGAAACACAC  500

seq1  TCAACCCCAAGCTCATTTTTATATATTACCCATGTCTATTTCCTTAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCCAAGCTCATTTTTATATATTACCCATGTCTATTTCCTTAAAGA  550

seq1  ATTTAGCTGTTGTGACAGAGACTATATGGCTCAGATAGCCTAAAATATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTGTTGTGACAGAGACTATATGGCTCAGATAGCCTAAAATATTA  600

seq1  GCAGCTGTTTTTCCAAGA-TTTGACTATTATTTTCATTT-AAAAATTGTT  648
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  GCAGCTGTTTTTCCAAGATTTTGACTATTATTTTCATTTAAAAAATTGTT  650

seq1  TAATTATAAATTTTTAATGCTGTGTTTTGAACCTATGGTTCCATTTATGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAAATTTTTAATGCTGTGTTTTGAACCTATGGTTCCATTTATGC  700

seq1  TGTTGTCTATGACAGTACTAGTGCTTAAGTAGTAATTATAAAAGAAACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTATGACAGTACTAGTGCTTAAGTAGTAATTATAAAAGAAACAG  750

seq1  AATATATATGTTCAATGAGATAAAGAAGTTATAATTTGCCAATGTACAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATGTTCAATGAGATAAAGAAGTTATAATTTGCCAATGTACAGT  800

seq1  CTGAGAAGATTCATAGGACAAACTGGTTTCTACAACAAACAATTATGTAT  848
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGAGAAGATTCATAGGACAAACTGGTTTCTACAACAAACATTTATGTAT  850

seq1  CAGGG-AAAAAAAAGATTGTTTAGATCAAAATAGAATTCAACCACACACT  897
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGGGAAAAAAAAAGATTGTTTAGATCAAAATAGAATTCCACCACACACT  900

seq1  ATGAACATTG-TTCATGGCCCTTATTTAAAAAGACATTAATGATGCAACT  946
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  ATGAACATTGTTTCATGGCCC-TATTTAAAAAGACATTAATGATGCAACT  949

seq1  GGGAAA-CTCTCACTAGGAATAATTAGGATAGTAAGAAATTACC-TTTGA  994
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGAAACCTCTCACTAGGAATAATTAGGATAGTAAGAAATTACCTTTTGA  999

seq1  AGCTGGGCAGGGTGGGGCATGCTGCTAATCTCAG-CATTCAGGAGGCAGA  1043
      ||||||||| |||||||||||||||| ||||||| ||||||||| |||||
seq2  AGCTGGGCA-GGTGGGGCATGCTGCT-ATCTCAGCCATTCAGGA-GCAGA  1046

seq1  GGCAGGCGGAACT-CTGTGAGTTCAAGGTCAACCTGGTCTACAAAATGAG  1092
      |||||   ||||| ||||||| |  |||| || |||||| || |||||||
seq2  GGCAG--CGAACTCCTGTGAGATTCAGGT-AATCTGGTCAAC-AAATGAG  1092

seq1  TTC  1095
      |||
seq2  TTC  1095