BAC Information

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BAC

Clone NameB6Ng01-078K24
ChromosomeX (Build37)X (Build37)
Map Location 70,499,226 - 70,499,39770,377,192 - 70,378,316
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGabre, Magea10, Gabra3, Gabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c
Downstream geneXlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078K24.bB6Ng01-078K24.g
ACCDH894318DH894319
length1731,132
definitionDH894318|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K24, 5' end.DH894319|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,499,226 - 70,499,397)(70,377,192 - 70,378,316)
sequence
tattttatttctctgtctctctgacactgtctctctgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgaaaggaggtgtgtgtgtgtgtataaatgttcgttt
atgtgagttttgattttacctgattactgggatttgttcttctcaaacca
tggggtgatggctgggattagga
gaattcctccaaaattccacaccttgacacactggaaaggttttaaagct
ctgacttgctgagcaatgccaatgcataaaattgagggaaggggaaaccc
actatttcctgatcagttaggtcaaatatatcaaacagattcctggagag
tttgtttcccatggggtggtcatggatgcagactcctcagacacgtccag
ataccacaatgaaatacttgatggccctttggtgctcgttagtcctttca
atgtgtaaaagaaaaacaggtagaagactgtttagtctttcactcctgtc
tcaggcataatgaagaaacaaaatgttctgttctggtggttttatgtcaa
ctttcaaattaagaaatgtagctcagtctgcaaataacaaagggttttag
taattcccatcgccaaggtaaggtgtcagagcagcgtgtaaagtccttgg
cctaaaagccccaggacttgagtttaatccccagcacccatttggaaagc
tggacagggtggctctcactttgatctcagctttgagaaggcagagacag
ctgggtccctggagctccctggtcaactagccttgtgttctcatggaatc
ttagggccatgagagatgttataggagaaaacaatgtagacagttcttga
ggaatgttacctgaacttgacctctggccactacacaactcttcacaagc
atgtattcccactgacacataaagacgaacctggacacatcagagcacac
atgtatgtgcatgcaaacacacacacaaacacacacatagaaaacagaaa
cacacacacacacacacacacacacacacacacacacacacacacaacaa
aacacaaagccacatagaaacctttctagtataagctgggtgtatctgta
agaaattctagattcaagaatgagacagggtctctaggagatctttttct
tgatagcaggtgttacttagggtacctgcatggaatttttgtggtctggt
agcagaagcaatttctgccttctgttgcagttatttcaggataagggttg
gacatgattcaggggggttctttgtaaggcctggactgatttggtcacac
cctttgtgaacacttagattagccaggggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_70499226_70499397
seq2: B6Ng01-078K24.b_51_223 (reverse)

seq1  TCCTATTCCCAGCCATCACCCCCTGGTT--AGCTGTCACAAATCCCAGTA  48
      ||||| |||||||||||||||| |||||  ||  |  |||||||||||||
seq2  TCCTAATCCCAGCCATCACCCCATGGTTTGAGAAG-AACAAATCCCAGTA  49

seq1  ATCAGGTAAAATCAAAACTCACATAAACGAACATTTATACACACACACAC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTAAAATCAAAACTCACATAAACGAACATTTATACACACACACAC  99

seq1  ACACACAAACACACACACACACACACACACACACACACAGAGAGACAGAG  148
      ||   |   ||||||||||||||||||||||||||||||||||||||| |
seq2  ACCTCCTTTCACACACACACACACACACACACACACACAGAGAGACAGTG  149

seq1  ACAGAGAGACAGAGAAATAAAATA  172
       |||||||||||||||||||||||
seq2  TCAGAGAGACAGAGAAATAAAATA  173

seq1: chrX_70377192_70378316
seq2: B6Ng01-078K24.g_67_1198 (reverse)

seq1  ACACCCCT-GCTA--CTAAGTGTTCCCAGA-GGTGTGACCCAAATCAGTC  46
      |||||||| ||||  |||||||||| || | ||||||| |||||||||||
seq2  ACACCCCTGGCTAATCTAAGTGTTCACAAAGGGTGTGA-CCAAATCAGTC  49

seq1  CAGGCCTTACAAAGAACCCCCTTGAATCATGTCCAACCCTATTCCTGAAA  96
      ||||||||||||||||||||| ||||||||||||||||||  ||||||||
seq2  CAGGCCTTACAAAGAACCCCCCTGAATCATGTCCAACCCTTATCCTGAAA  99

seq1  T-ACTGC-ACAG-AGGCAG-AATTGCTTCTGCTACCAGACCCACAAAAAA  142
      | ||||| |||| |||||| ||||||||||||||||||| |||| |||||
seq2  TAACTGCAACAGAAGGCAGAAATTGCTTCTGCTACCAGA-CCAC-AAAAA  147

seq1  TTCCATGCAGGTA-CCTAAGTAACACCTGCTATCCAGGAAAAGATCTCCT  191
      ||||||||||||| |||||||||||||||||||| || ||||||||||||
seq2  TTCCATGCAGGTACCCTAAGTAACACCTGCTATCAAGAAAAAGATCTCCT  197

seq1  AGAGACCCTGTCTCATTCGTGAATCCTAGAATTTCTTACAGATACA-CCA  240
      |||||||||||||||||| ||||| ||||||||||||||||||||| |||
seq2  AGAGACCCTGTCTCATTCTTGAAT-CTAGAATTTCTTACAGATACACCCA  246

seq1  GCTTATACTAG-AAGGTTTCTATGTGGCTTTGTGTTTTGTTGTGTGTGTG  289
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTTATACTAGAAAGGTTTCTATGTGGCTTTGTGTTTTGTTGTGTGTGTG  296

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTTTTCTAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTTTTCTAT  346

seq1  GTGTGTGTTTGTGTGTGTGTTTGCATGCACATACATGTGTGCTCTGATGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTTTGTGTGTGTGTTTGCATGCACATACATGTGTGCTCTGATGT  396

seq1  GTCCAGGTTCGTCTTTATGTGTCAGTGGGAATACATGCTTGTGAAGAGTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGTTCGTCTTTATGTGTCAGTGGGAATACATGCTTGTGAAGAGTT  446

seq1  GTGTAGTGGCCAGAGGTCAAGTTCAGGTAACATTCCTCAAGAACTGTCTA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTGGCCAGAGGTCAAGTTCAGGTAACATTCCTCAAGAACTGTCTA  496

seq1  CATTGTTTTCTCCTATAACATCTCTCATGGCCCTAAGATTCCATGAGAAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTTCTCCTATAACATCTCTCATGGCCCTAAGATTCCATGAGAAC  546

seq1  ACAAGGCTAGTTGACCAGGGAGCTCCAGGGACCCAGCTGTCTCTGCCTTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTAGTTGACCAGGGAGCTCCAGGGACCCAGCTGTCTCTGCCTTC  596

seq1  TCAAAGCTGAGATCAAAGTGAGAGCCACCCTGTCCAGCTTTCCAAATGGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTGAGATCAAAGTGAGAGCCACCCTGTCCAGCTTTCCAAATGGG  646

seq1  TGCTGGGGATTAAACTCAAGTCCTGGGGCTTTTAGGCCAAGGACTTTACA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGATTAAACTCAAGTCCTGGGGCTTTTAGGCCAAGGACTTTACA  696

seq1  CGCTGCTCTGACACCTTACCTTGGCGATGGGAATTACTAAAACCCTTTGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTCTGACACCTTACCTTGGCGATGGGAATTACTAAAACCCTTTGT  746

seq1  TATTTGCAGACTGAGCTACATTTCTTAATTTGAAAGTTGACATAAAACCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCAGACTGAGCTACATTTCTTAATTTGAAAGTTGACATAAAACCA  796

seq1  CCAGAACAGAACATTTTGTTTCTTCATTATGCCTGAGACAGGAGTGAAAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACAGAACATTTTGTTTCTTCATTATGCCTGAGACAGGAGTGAAAG  846

seq1  ACTAAACAGTCTTCTACCTGTTTTTCTTTTACACATTGAAAGGACTAACG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAGTCTTCTACCTGTTTTTCTTTTACACATTGAAAGGACTAACG  896

seq1  AGCACCAAAGGGCCATCAAGTATTTCATTGTGGTATCTGGACGTGTCTGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAAAGGGCCATCAAGTATTTCATTGTGGTATCTGGACGTGTCTGA  946

seq1  GGAGTCTGCATCCATGACCACCCCATGGGAAACAAACTCTCCAGGAATCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGCATCCATGACCACCCCATGGGAAACAAACTCTCCAGGAATCT  996

seq1  GTTTGATATATTTGACCTAACTGATCAGGAAATAGTGGGTTTCCCCTTCC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATATATTTGACCTAACTGATCAGGAAATAGTGGGTTTCCCCTTCC  1046

seq1  CTCAATTTTATGCATTGGCATTGCTCAGCAAGTCAGAGCTTTAAAACCTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTTATGCATTGGCATTGCTCAGCAAGTCAGAGCTTTAAAACCTT  1096

seq1  TCCAGTGTGTCAAGGTGTGGAATTTTGGAGGAATTC  1125
      ||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTGTCAAGGTGTGGAATTTTGGAGGAATTC  1132