BAC Information

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BAC

Clone NameB6Ng01-079B03
ChromosomeX (Build37)17 (Build37)
Map Location 136,373,314 - 136,373,96773,105,537 - 73,106,041
singlet/doubletsingletsinglet
Overlap geneMorc4
Upstream geneIl1rapl2, Nrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2
Downstream geneRbm41, Gm719, E230019M04Rik, LOC622213, LOC100041446, EG245643, LOC666424, Prps1, Tsc22d3, Mid2, LOC619612, Tex13, LOC632685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079B03.bB6Ng01-079B03.g
ACCDH894587DH894588
length674980
definitionDH894587|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B03, 5' end.DH894588|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(136,373,314 - 136,373,967)(73,105,537 - 73,106,041)
sequence
actcactatacggagagatccgcggattcatttctgtctactgttatagg
tgtatatatatgacagacggtatacataaagtaaaaagtgaattggaaag
tgaacagggactaatgaaaagactcaaggaggagagagacacctcaggtc
cactttactatcaaggtgcagttgtttgtatgtagtattttactgctctt
ctgctagactattcaataacgtgacatggttcttttatgacttcttgtag
tgatgtttcattgttttaaatcctgtttcttaattactagttataaaaat
aacaaaaccccttgtagaaaattacaaatagagaaatttataaagaagaa
aataaaaggtagttctgacactcaaaccaacgtcctcttttaaaaacatc
tatttagccaagttgccctcatacttttagacctctctattgctttaggt
tgctccagacttgcaatctgctctaagctcacgcctgacctctgctgtct
ggtatttccacacaactacagagccagagcccatagataccaatttcagc
acaagtggaagaagaacggaaaggtcatgttagctttggttttagatgta
tttacacagaagaatgtcttgctgaaagatgcctgcttcttttttgatga
caaggacatgaagagggcagcaac
gaattcagtacccacaaaggacagaaggggcactatattctctagaactg
aagttactgatggttgttggctaccatgtgggtgctatgaaccaagccca
ggtcatctgcgagaggaacaagtgcgtttaacactccagacaaccttagc
atttcttatagggcagatttgctagtcaagaatggtgtcactttttgtca
atctgaaaatgtcatttcttctttattttccaaggccactttttgctgga
tatatgattgttcatttcagttttgtgctttcagtgatttgatctggcat
tctattgtcttctgcccttctagtgagaaatgaaatatctgtattccctt
tctgctttcaaaagtctatctttggtattggctgctaacagtttgtttat
gacatgtggctccatctgaattcattctactttgagctgagtttcttcaa
tgtatagattaagtcactattgtagatgccaggaagtacttgctgacagg
agcctggtatagctgtctcttgagaggctctgccagagccttacaaatac
agaggtggatgcttgcagccaacaattgaactgatcatagggtccccaat
ggaggagttagagaaatgcctgaaggagttgaaggggtttgcaaccccat
agaaagaaccacaatatcaaccaatcagacccaccagagctcccagggac
taaaccaccaaccaaagagtacacatggctccagctgcatatgtagcaga
ggatggccttgaccagcatcaatgagaggagaggtccttggtccagtgaa
agcttgatgcctcagtgtagaggaattcgagggcagggaggtgcgagtgg
tggtgggtgtgggaccaccccatagaagcaggggatggggaggagataag
ggctcccggggaaactgaaggtgatacctttgatgtaatatagaatttcc
ataataattttaagtgtttacccttagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_136373314_136373967
seq2: B6Ng01-079B03.b_26_674

seq1  ATTCATTTCCCTGTCTAACTGTCTATAGTGTGTATATATATGACAGACGG  50
      ||||||||  |||||| ||||| ||||| |||||||||||||||||||||
seq2  ATTCATTT--CTGTCT-ACTGT-TATAG-GTGTATATATATGACAGACGG  45

seq1  TATACATAAAGTAAAAAGTTGAATTGGAAAGTGAACAGGGACTAATGAAA  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATACATAAAGTAAAAAG-TGAATTGGAAAGTGAACAGGGACTAATGAAA  94

seq1  AGACTCAAGGAGGAGAGAGACACCTCAGGTCCACTTTACTATCAAGGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAGGAGGAGAGAGACACCTCAGGTCCACTTTACTATCAAGGTGC  144

seq1  AGTTGTTTGTATGTAGTATTTTACTGCTCTTCTGCTAGACTATTCAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTGTATGTAGTATTTTACTGCTCTTCTGCTAGACTATTCAATAA  194

seq1  CGTGACATGGTTCTTTTATGACTTCTTGTAGTGATGTTTCATTGTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACATGGTTCTTTTATGACTTCTTGTAGTGATGTTTCATTGTTTTAA  244

seq1  ATCCTGTTTCTTAATTACTAGTTATAAAAATAACAAAACCCCTTGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTTCTTAATTACTAGTTATAAAAATAACAAAACCCCTTGTAGAA  294

seq1  AATTACAAATAGAGAAATTTATAAAGAAGAAAATAAAAGGTAGTTCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAATAGAGAAATTTATAAAGAAGAAAATAAAAGGTAGTTCTGAC  344

seq1  ACTCAAACCAACGTCCTCTTTTAAAAACATCTATTTAGCCAAGTTGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACCAACGTCCTCTTTTAAAAACATCTATTTAGCCAAGTTGCCCT  394

seq1  CATACTTTTAGACCTCTCTATTGCTTTAGGTTGCTCCAGACTTGCAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTTTAGACCTCTCTATTGCTTTAGGTTGCTCCAGACTTGCAATCT  444

seq1  GCTCTAAGCTCACGCCTGACCTCTGCTGTCTGGTATTTCCACACAACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGCTCACGCCTGACCTCTGCTGTCTGGTATTTCCACACAACTAC  494

seq1  AGAGCCAGAGCCCATAGATACCAATTTCAGCACAAGTGGAAGAAGAACGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGAGCCCATAGATACCAATTTCAGCACAAGTGGAAGAAGAACGG  544

seq1  AAAGGTCATGTTAGCTTTGGTTTTAGATGTATTTACACAGAAGAATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCATGTTAGCTTTGGTTTTAGATGTATTTACACAGAAGAATGTCT  594

seq1  TGCAGAAAGATGCCTGCATCATTTCTGATGACAAGGACAGGAAGA-GGCA  649
      ||| ||||||||||||| || ||| |||||||||||||| ||||| ||||
seq2  TGCTGAAAGATGCCTGCTTCTTTTTTGATGACAAGGACATGAAGAGGGCA  644

seq1  GCAAC  654
      |||||
seq2  GCAAC  649

seq1: chr17_73105537_73106041
seq2: B6Ng01-079B03.g_800_1047

seq1  AGCTGCATATGTAGCAGAGGATGGCCTAGTTAGCCATCATTGGGAAGAGA  50
      ||||||||||||||||||||||||||| |     ||||| || || ||||
seq2  AGCTGCATATGTAGCAGAGGATGGCCTTGACCAGCATCAATGAGAGGAGA  50

seq1  GGCCCCTTGGTC--TTGCAAACTTTATCTGCCCCAATACAGGGGAACACC  98
      ||  ||||||||   || || ||| |  |||| || |  || ||||  | 
seq2  GG-TCCTTGGTCCAGTGAAAGCTTGA--TGCCTCAGTGTAGAGGAATTCG  97

seq1  AGGGCCAAGAAGTGGGAGTGGTGG-----GTAGG-----------GGAGC  132
      |||||   || ||| |||||||||     || ||           | |||
seq2  AGGGCAGGGAGGTGCGAGTGGTGGTGGGTGTGGGACCACCCCATAGAAGC  147

seq1  AGGG--TGGGG-GGAGAGTATTGGGGGCTTTCGGGATAGCATTTGAAATG  179
      ||||  ||||| |||||    |  |||||  ||||              |
seq2  AGGGGATGGGGAGGAGA----TAAGGGCTCCCGGG--------------G  179

seq1  TAAATGAAGAAAATATCTAATAAAAAATAATTAAAAAAAAGAATTCTAGC  229
       || |||||   ||| ||         |   |  || | ||||||    |
seq2  AAACTGAAGGTGATACCT---------TTGATGTAATATAGAATT---TC  217

seq1  CAAAATCTTCATAAATTTTGTTACAATGTTTTTAACGTCTCATAAAATAA  279
      || |||       ||||||      | || |||| | | |  |||     
seq2  CATAAT-------AATTTT------AAGTGTTTACCCT-TAGTAA-----  248

seq1  TGAAAACATCTAGATTTAAGTTTTCCCACTACACAATACCATCAGGAAAA  329
                                                        
seq2  --------------------------------------------------  248

seq1  GCTGTTCAGCTCCATCTAAGAGTCCACATGTACAAATGTGAACTACTGGC  379
                                                        
seq2  --------------------------------------------------  248

seq1  TAAAACTAATTACAAATATCCATGACAGTGCATTCTGCTAGCACGGCTGA  429
                                                        
seq2  --------------------------------------------------  248

seq1  AGAACCAGTAAAGATAAAAAAAATTTTTCATATGTACTGAAAATATAAAC  479
                                                        
seq2  --------------------------------------------------  248

seq1  AGAAAAATAGTGTTTACCCTTAGTAA  505
                                
seq2  --------------------------  248