BAC Information

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BAC

Clone NameB6Ng01-081C09
ChromosomeX (Build37)
Map Location 163,481,531 - 163,619,410
singlet/doubletdoublet
Overlap geneEG667794, LOC100040850, LOC627268
Upstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791
Downstream geneTmsb4x, Tlr8, Tlr7, Prps2, EG627311, Frmpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081C09.bB6Ng01-081C09.g
ACCDH896084DH896085
length3371,109
definitionDH896084|Mus musculus domesticus DNA, BAC clone: B6Ng01-081C09, 5' end.DH896085|Mus musculus domesticus DNA, BAC clone: B6Ng01-081C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,481,531 - 163,481,867)(163,618,293 - 163,619,410)
sequence
gaattctcagttccttctccagcatcatgcctgcctggatactgccatgc
tctctcgccttgatgataatggactgaatctctgaacctgtaaaccagcc
ccaattaaattttgttcttatacgagttgccttggtcattgagtttattt
gcagcaataaaaccttatctaaaacacagttgttgaacttgtcaagcttc
aatggtcagttccaaataatggtcacacatgagcttggttaaactcagtg
agtaacaaaattaaaaaaaaaaagacacaatatgagagaaggattatagg
gaggaggtaggaaggaaagagaaaagtatggggttat
gaattctgatgtcttatacaagatgctgaggggttttctgccaggaggca
caggacttcaagaattcctgaagtggttttatgccgttagctcattgctc
atggtgttctttgtgccaccgtgccaggttcaagaggccacgttcactag
attttgtagggctatccaaaactgatgattttgttaaggttcctgaagtc
catcatgtccactctcaacaatgaatggctcatcaactccatttcttgca
ttatggttcaaactgaaccaaagatcatgtctgctggccaaacctccagg
cagaacaccaaagagttgctcagctcttgtcaggaaaacaactaggaagt
gaatctttgacagcagaagttgcatgtatgctaggcagcctctccagaga
ggaagcctgcttatgtttgtccttcttagtctcggacattatggaagccc
aaagaacccaccacaggggctctgtccagcttgcctttgaaggaaaaacc
aatgtaaaacatctgtaccagctgtggtacattccacatccaagagcccg
atgcaaatttagttttctatttctttgtttttgttgttgttaacccaggt
taactcaaactggcctgaaactcactatatagccaaggatggccttgaac
tcctgatcttcttgattgcgtctcccaagtgctggggtaacagatatgta
ccatggttttttttgctttgtttttgatttctgaatactagggctactta
agttgtttgcccatgagtagaatccttaaaacctctctgaataccttaca
gagaggtttattttagccaaggctatatcatccttttggctatgagagtc
cctgaaatattgggaaatgattttaaataaatcccacattatttaaatgt
tcccatgaaagtgtaataactgtgctgttgattctatttgaagacatgtc
agacggcaaggcctctcttgacaaagcagccaggaagtgactctactccc
caaagaagcattttttaattggtgctttttgccctttaaagatagaatgg
agttgaaacccttcctgctctggatgctgtctgggggggatggagttgtt
attttttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_163481531_163481867
seq2: B6Ng01-081C09.b_46_382

seq1  GAATTCTCAGTTCCTTCTCCAGCATCATGCCTGCCTGGATACTGCCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTCCTTCTCCAGCATCATGCCTGCCTGGATACTGCCATGC  50

seq1  TCTCTCGCCTTGATGATAATGGACTGAATCTCTGAACCTGTAAACCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGCCTTGATGATAATGGACTGAATCTCTGAACCTGTAAACCAGCC  100

seq1  CCAATTAAATTTTGTTCTTATACGAGTTGCCTTGGTCATTGAGTTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAAATTTTGTTCTTATACGAGTTGCCTTGGTCATTGAGTTTATTT  150

seq1  GCAGCAATAAAACCTTATCTAAAACACAGTTGTTGAACTTGTCAAGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATAAAACCTTATCTAAAACACAGTTGTTGAACTTGTCAAGCTTC  200

seq1  AATGGTCAGTTCCAAATAATGGTCACACATGAGCTTGGTTAAACTCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCAGTTCCAAATAATGGTCACACATGAGCTTGGTTAAACTCAGTG  250

seq1  AGTAACAAAATTAAAAAAAAAAAGACACAATATGAGAGAAGGATTATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAAAATTAAAAAAAAAAAGACACAATATGAGAGAAGGATTATAGG  300

seq1  GAGGAGGTAGGAAGGAAAGAGAAAAGTATGGGGTTAT  337
      |||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTAGGAAGGAAAGAGAAAAGTATGGGGTTAT  337

seq1: chrX_163618293_163619410
seq2: B6Ng01-081C09.g_70_1178 (reverse)

seq1  GGAATAAAATAACAACTACATCCACCAGA-ACAGCATACAAGAGCAGGGA  49
      |||| |||||||||||| ||||| ||  | ||||||| | |||||||| |
seq2  GGAA-AAAATAACAACTCCATCCCCCCCAGACAGCAT-CCAGAGCAGGAA  48

seq1  AGGTTTCACTTCCTTTCTAACCTTTATAGGGCAGAAAAGCACAATTTAAA  99
       |||||||  ||| |||| | ||||| |||||| |||||||| | |||||
seq2  GGGTTTCAACTCCATTCT-ATCTTTAAAGGGCA-AAAAGCACCAATTAAA  96

seq1  AAATGCTGTCTCTGGGGGAGTAGAGTCACTTCCTGGCTGCTTTTGTCAAG  149
      ||||||| ||| | |||||||||||||||||||||||||| |||||||||
seq2  AAATGCT-TCT-TTGGGGAGTAGAGTCACTTCCTGGCTGC-TTTGTCAAG  143

seq1  AGAGGCCCTGCCGTCTGACATGTCTTCAAATAGAATCAACAAGCACAGTT  199
      ||||||| |||||||||||||||||||||||||||||||| ||||||| |
seq2  AGAGGCCTTGCCGTCTGACATGTCTTCAAATAGAATCAAC-AGCACAG-T  191

seq1  TATTACACCTTTCATGGGAACATTTAAATAATGTGGGATTTTATTTAAAA  249
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  TATTACA-CTTTCATGGGAACATTTAAATAATGTGGGA-TTTATTTAAAA  239

seq1  TCATTTTCCCAATATTTCAGGGACTCTCATAGCCAAAAGGATGATATAGC  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-TTTCCCAATATTTCAGGGACTCTCATAGCCAAAAGGATGATATAGC  288

seq1  CTTGGCTAAAATAAACCTCTCTGTAAGGTATTCAGAGAGGTTTTAAGGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTAAAATAAACCTCTCTGTAAGGTATTCAGAGAGGTTTTAAGGAT  338

seq1  TCTACTCATGGGCAAACAACTTAAGTAGCCCTAGTATTCAGAAATCAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCATGGGCAAACAACTTAAGTAGCCCTAGTATTCAGAAATCAAAA  388

seq1  ACAAAGC--AAAAAACCATGGTACATATCTGTTACCCCAGCACTTGGGAG  447
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCAAAAAAAACCATGGTACATATCTGTTACCCCAGCACTTGGGAG  438

seq1  ACGCAATCAAGAAGATCAGGAGTTCAAGGCCATCCTTGGCTATATAGTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAATCAAGAAGATCAGGAGTTCAAGGCCATCCTTGGCTATATAGTGA  488

seq1  GTTTCAGGCCAGTTTGAGTTAACCTGGGTTAACAACAACAAAAACAAAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGCCAGTTTGAGTTAACCTGGGTTAACAACAACAAAAACAAAGA  538

seq1  AATAGAAAACTAAATTTGCATCGGGCTCTTGGATGTGGAATGTACCACAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAACTAAATTTGCATCGGGCTCTTGGATGTGGAATGTACCACAG  588

seq1  CTGGTACAGATGTTTTACATTGGTTTTTCCTTCAAAGGCAAGCTGGACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACAGATGTTTTACATTGGTTTTTCCTTCAAAGGCAAGCTGGACAG  638

seq1  AGCCCCTGTGGTGGGTTCTTTGGGCTTCCATAATGTCCGAGACTAAGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGTGGTGGGTTCTTTGGGCTTCCATAATGTCCGAGACTAAGAAG  688

seq1  GACAAACATAAGCAGGCTTCCTCTCTGGAGAGGCTGCCTAGCATACATGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACATAAGCAGGCTTCCTCTCTGGAGAGGCTGCCTAGCATACATGC  738

seq1  AACTTCTGCTGTCAAAGATTCACTTCCTAGTTGTTTTCCTGACAAGAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGCTGTCAAAGATTCACTTCCTAGTTGTTTTCCTGACAAGAGCT  788

seq1  GAGCAACTCTTTGGTGTTCTGCCTGGAGGTTTGGCCAGCAGACATGATCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACTCTTTGGTGTTCTGCCTGGAGGTTTGGCCAGCAGACATGATCT  838

seq1  TTGGTTCAGTTTGAACCATAATGCAAGAAATGGAGTTGATGAGCCATTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCAGTTTGAACCATAATGCAAGAAATGGAGTTGATGAGCCATTCA  888

seq1  TTGTTGAGAGTGGACATGATGGACTTCAGGAACCTTAACAAAATCATCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGAGTGGACATGATGGACTTCAGGAACCTTAACAAAATCATCAG  938

seq1  TTTTGGATAGCCCTACAAAATCTAGTGAACGTGGCCTCTTGAACCTGGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATAGCCCTACAAAATCTAGTGAACGTGGCCTCTTGAACCTGGCA  988

seq1  CGGTGGCACAAAGAACACCATGAGCAATGAGCTAACGGCATAAAACCACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGCACAAAGAACACCATGAGCAATGAGCTAACGGCATAAAACCACT  1038

seq1  TCAGGAATTCTTGAAGTCCTGTGCCTCCTGGCAGAAAACCCCTCAGCATC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATTCTTGAAGTCCTGTGCCTCCTGGCAGAAAACCCCTCAGCATC  1088

seq1  TTGTATAAGACATCAGAATTC  1118
      |||||||||||||||||||||
seq2  TTGTATAAGACATCAGAATTC  1109