BAC Information

Click to search

BAC

Clone NameB6Ng01-081N13
ChromosomeX (Build37)
Map Location 25,333,831 - 25,503,729
singlet/doubletdoublet
Overlap geneEG382275
Upstream geneEG546282, LOC100040417, LOC100040428, LOC100040433, Xmr, LOC100038968, LOC100038977, LOC100038997, LOC664810
Downstream geneLOC100039030, LOC100039065, LOC100039078, LOC100039003, Slx, LOC100039120, LOC619914, LOC100039039, LOC619991, LOC664844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081N13.bB6Ng01-081N13.g
ACCDH896575DH896576
length1,1021,185
definitionDH896575|Mus musculus domesticus DNA, BAC clone: B6Ng01-081N13, 5' end.DH896576|Mus musculus domesticus DNA, BAC clone: B6Ng01-081N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,333,831 - 25,334,668)(25,502,537 - 25,503,729)
sequence
gaattctttcagaaaatggaaacataaggaacactgccaaactcattctc
tgactcgacagagaccctgtggtgtcatagttctaccacagttcatagta
acacctaaatcatataaagactcaacagagaactagaacttcagacttat
ttctcttatgaacattgatgcaaaattactcagtaaaatactcaaactga
attttggaacataacaagatgcaacaaacccaaacatatactttaataac
aagacagtatgtagtaatccactagtaggaaaatggttccacaaacaggc
aaaagagtcttagacaaccccattcccactggtaggaggagaacacaaac
cccaagcttcacaactatatcatgaatgtagagggcctagtacagaccca
caggggctctgtggttgttgcttccatattaatgaacacctaagagcctt
gatgagttgactctgtagactgtgatttcctggtatccttgatccctctt
attcctgcaatcttttctccacatatcccaaggaattccctgatctccac
ctaatacttgacagtggatctctgcacccatcagctgctataggaagctt
ctctaattattaggcaatttagtgatctaaatatcatcttctggtgtcct
ctttgatttatttctataaacatttaaaatattttggcttactcaatttt
atttgtgtgggtacgtacccaagatgttttctgtggtttgtggctgttgt
ggatggtgttgtttacctgcttcattggctgggccataccccacaataaa
tttacccacatctttgtatgttttcttggagaatagaccaacactacccc
aatagtgatatcctatccacattgccagtgatgtctaactgccattaaaa
gcaacttttatctgactccacacccagtttgcatcagatttattaattct
tctgctttattcaaatataattgtccttctatatattaagatatacaaat
ctacatactaaattcagctatgtctccatagagaagacattggggaccct
tagatgatattaaattatatatacctcgtaaccttgagggagtgtggtgg
gg
gaattcagtctgttctcatgcagcaaaacagatcattgacatcaataggg
tcttccaaggaatagaaactatggataccatcatgtttcctgggttcagc
atttagcagtgacagcaacataggttcaggttgtaagtcacatcagaggc
ttgaaacaagtttcctataggaaaacacactactaacctcattgggatct
tgggcagaagttctgaccatgcatttcataattgatgcttttgtccacag
tgatcatagacattaccaagatcttcagagtcagcacatgtggttacaaa
tggtacaatgggagagtaaaatcaacatatttatcttagcaaataggaca
attggtattacaatctggtccaaagtgtcagtaggtatcattaacatcct
ggttgcctctggcatcaaagttcttggatataacatggcgtctattgcca
ggaagaatcagaacatcgtgattgtttcagagagcagggagaaccatgaa
cagaattcacatctatagtgtcagaatggagcattgacttcaaaattatc
acagctaagagtatatatatatctcataaaagccattcccacaggtgaga
gaagcatgtatcactgacatcagtatagattccaatgagagttggaatca
ctcatattaatgtggccctaaatgggagaaaggatcaatgacaacattgt
tgcttgtggtgtcaaagagtatagacatagaacgatttgtcttcccatga
tgtatatattagtgaactcatggtccagagcaggggctatatgcctatat
cagggatatcaacagaatttcctgtggccaataggatcttagatatcaat
gtgatctccagtgcacctcagatcctgtacctcaatatgatatccagtgt
cagtatggaccataaaatatggacttactttaaacagcagcagacatcat
ccttatgatcatggtctccatcaccttcagtaaaagaaacaataaaatcc
atcatgattggtggtcaaaccattcattaccaatcattcttagtttcagg
ttcagttaccattcagtggttcaaagtttctccagtagcagccacagcac
ttactcattatgacataggcagcaatagtgatctgaactttacaatcgac
tcttgactaagatcataaacgaacgattcaaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_25333831_25334668
seq2: B6Ng01-081N13.b_314_1146

seq1  CACTAGTAGGAAAATGGTTCCACAAACAGGCAAAAGAGTCTTAGACAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTAGGAAAATGGTTCCACAAACAGGCAAAAGAGTCTTAGACAACC  50

seq1  CCATTCCCACTGGTAGGAGGACGACACAAACCCCAAGCTTCACAACTATA  100
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  CCATTCCCACTGGTAGGAGGAGAACACAAACCCCAAGCTTCACAACTATA  100

seq1  TCATGAATGTAGAGGGCCTAGCACAGACCCACAGGGGCTCTGTGGTTGTT  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCATGAATGTAGAGGGCCTAGTACAGACCCACAGGGGCTCTGTGGTTGTT  150

seq1  GCTTCCATATTAATGAACACCTAAGAACCTTGATGAGTTGACTCTGTAGA  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTTCCATATTAATGAACACCTAAGAGCCTTGATGAGTTGACTCTGTAGA  200

seq1  CTGTGATTTCCTGGTATCCTTGACCCCTCTTATTCCTGCAATCTTTTCTC  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGTGATTTCCTGGTATCCTTGATCCCTCTTATTCCTGCAATCTTTTCTC  250

seq1  CACATATCCCAAGGAATTCCCTGATCTCCACCTAATACTTGACAGTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATCCCAAGGAATTCCCTGATCTCCACCTAATACTTGACAGTGGAT  300

seq1  CTCTGCACCCATCAGCTGCTATAGGAAGCTTCTCTAATTATTAGGCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACCCATCAGCTGCTATAGGAAGCTTCTCTAATTATTAGGCAATT  350

seq1  TAGTGATCTAAATATCATCTTCTGGTGTCCTCTTTGATTTATTTCTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATCTAAATATCATCTTCTGGTGTCCTCTTTGATTTATTTCTATAA  400

seq1  ACATTTAAAATATTTTGTCATACTCAACTTTTATTTGTGTGGGTACGTAC  450
      ||||||||||||||||| | ||||||| ||||||||||||||||||||||
seq2  ACATTTAAAATATTTTGGCTTACTCAA-TTTTATTTGTGTGGGTACGTAC  449

seq1  CCAAGATGTTTTCTGTGGTTTGTGGCTGTTGTGGATGGTGTTATTTACCT  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCAAGATGTTTTCTGTGGTTTGTGGCTGTTGTGGATGGTGTTGTTTACCT  499

seq1  GCTTCATTGGCTGGGCCATACCCCACAATAAATTTACCCACATCTTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTGGCTGGGCCATACCCCACAATAAATTTACCCACATCTTTGTA  549

seq1  TGTTTTCTTGGAGAATAGACCAACACTACCCCAATAGTGATATCCTATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTGGAGAATAGACCAACACTACCCCAATAGTGATATCCTATCC  599

seq1  ACATTGCCAGTGATGTCTAACTGCCATTAAAAGCACCTTTTATCTGACTC  650
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACATTGCCAGTGATGTCTAACTGCCATTAAAAGCAACTTTTATCTGACTC  649

seq1  CACACCCAGTTTGCATCAAGATTTATTAATTCTTCTGCTATATTTAAAAT  700
      ||||||||||||||||| ||||||||||||||||||||| || || ||||
seq2  CACACCCAGTTTGCATC-AGATTTATTAATTCTTCTGCTTTA-TTCAAAT  697

seq1  AT-ATTGTCCTTCTATATATTAAGATATACAATTCTACATACTAAATTCG  749
      || ||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  ATAATTGTCCTTCTATATATTAAGATATACAAATCTACATACTAAATTCA  747

seq1  GCTATGTCTTCCATAGAG-AGGCA-TGGGGACCCTTAGATAAAATATAAA  797
      |||||||| ||||||||| || || |||||||||||||||   |||| ||
seq2  GCTATGTC-TCCATAGAGAAGACATTGGGGACCCTTAGAT--GATATTAA  794

seq1  AATAAAAATATACTCAGTAACCTTGAGGGGATGTGGTGGGG  838
      | |  | ||||||   |||||||||||||  ||||||||||
seq2  ATT--ATATATACCTCGTAACCTTGAGGGAGTGTGGTGGGG  833

seq1: chrX_25502537_25503729
seq2: B6Ng01-081N13.g_72_1256 (reverse)

seq1  GACTTTGAATTCTGTCCTGTCTATGATCCTTTAGTCAAAGAGTCTATTGT  50
      ||||||||||   || | || |||||||  |||||| ||||||| |||||
seq2  GACTTTGAAT--CGTTC-GTTTATGATC--TTAGTC-AAGAGTCGATTGT  44

seq1  AAAGTTCATGATCAATATTGCTGCCTAATGTCATAATGAGTTAAGTGCTG  100
      |||||||| ||||| ||||||||||| ||||||||||||| |||||||||
seq2  AAAGTTCA-GATCACTATTGCTGCCT-ATGTCATAATGAG-TAAGTGCTG  91

seq1  TGTGCTGCTACTGGAGATACTTTTGACACCTGGGATGGTACTTGAACCTG  150
      || |||||||||||||| |||||  ||  || | ||||||  ||||||||
seq2  TG-GCTGCTACTGGAGAAACTTTGAACCACT-GAATGGTAACTGAACCTG  139

seq1  AAACTATGTTGATG-TGGGTAATGAATGTTTTGACCAGCAATCATGATGG  199
      |||||| |   ||| | ||||||||||| |||||||| ||||||||||||
seq2  AAACTAAG--AATGATTGGTAATGAATGGTTTGACCACCAATCATGATGG  187

seq1  ATTCCATTGTTTCTATTAATGAAATTGATGGAAACCCTGATCATAAGGAT  249
      |||  ||||||||| ||| ||||  ||||||| ||| |||||||||||||
seq2  ATTTTATTGTTTCTTTTACTGAAGGTGATGGAGACCATGATCATAAGGAT  237

seq1  GACCTCTGCTGCTGTTTAAGGTAATTCCATATTTTATGGTCCATACTGAC  299
      ||  ||||||||||||||| |||| |||||||||||||||||||||||||
seq2  GATGTCTGCTGCTGTTTAAAGTAAGTCCATATTTTATGGTCCATACTGAC  287

seq1  ACTGGTTATATTATTGAGGTACAGGATCTGAGGTGCACTGGAGATCACAT  349
      ||||| |||  |||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATATCATATTGAGGTACAGGATCTGAGGTGCACTGGAGATCACAT  337

seq1  TGATATCCGAGATCCTATTAGCCACAGAAAATTCTGTTGATATCCCTGAT  399
      |||||||  |||||||||| ||||||| ||||||||||||||||||||||
seq2  TGATATCTAAGATCCTATTGGCCACAGGAAATTCTGTTGATATCCCTGAT  387

seq1  GTATGCATGTAGCCCCTGCTCTGGACCATGCGTTCACTAATATATACATC  449
       || |||| ||||||||||||||||||||| |||||||||||||||||||
seq2  ATAGGCATATAGCCCCTGCTCTGGACCATGAGTTCACTAATATATACATC  437

seq1  TTTGGAAGACAAATCGATC--TGTCTATACTCTTTGATACCACAAGCAAC  497
       | ||||||||||||| ||  |||||||||||||||| ||||||||||||
seq2  ATGGGAAGACAAATCGTTCTATGTCTATACTCTTTGACACCACAAGCAAC  487

seq1  AATGTTGTCATTGATCCTTTCTCCCATTTAGGGCCACATTAATATGAATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATGTTGTCATTGATCCTTTCTCCCATTTAGGGCCACATTAATATGAGTG  537

seq1  ATTCCAACTGTCATTGGAATCTATACTGATGTCAGTGAGGCATGCTTCTC  597
      ||||||||| ||||||||||||||||||||||||||||  ||||||||||
seq2  ATTCCAACTCTCATTGGAATCTATACTGATGTCAGTGATACATGCTTCTC  587

seq1  TCACCTGTGGGAATGTCCTTTAT--GATATATATATACTCTTAGCTGTGA  645
      ||||||||||||||| | |||||  |||||||||||||||||||||||||
seq2  TCACCTGTGGGAATGGCTTTTATGAGATATATATATACTCTTAGCTGTGA  637

seq1  TAATTTTGAAGTCAATGCTCCATTCTGACACTATAGATGTGATTTCTGTT  695
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAATTTTGAAGTCAATGCTCCATTCTGACACTATAGATGTGAATTCTGTT  687

seq1  CATGGTTCTCCCTGCTCTCTGAAACAATCACGATGTTCTGATTCTTCCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTCTCCCTGCTCTCTGAAACAATCACGATGTTCTGATTCTTCCTG  737

seq1  GCAATAGACGCCATGGTATATCCAAGAACTTTGATGCCAGAGGCAACCAG  795
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCAATAGACGCCATGTTATATCCAAGAACTTTGATGCCAGAGGCAACCAG  787

seq1  GATGTTAATGATACCTACTGACACTTTGGACCAGATTGTGATACCAATTG  845
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATGTTAATGATACCTACTGACACTTTGGACCAGATTGTAATACCAATTG  837

seq1  TCCTATTTGCTAAGATAAATATGTTGATTTTACTCTCCCATTGTACCATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTGCTAAGATAAATATGTTGATTTTACTCTCCCATTGTACCATT  887

seq1  TGTAACCACATGTGCTGACCCTGAAGATCTTGGTAATGTCTATGATCACT  945
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTAACCACATGTGCTGACTCTGAAGATCTTGGTAATGTCTATGATCACT  937

seq1  GTGGACAAAAGCATCAATTATGAAATGCATGGTCAGAACTTCTGCCCAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAAAAGCATCAATTATGAAATGCATGGTCAGAACTTCTGCCCAAG  987

seq1  ATCCCAATGAGGTTAGTAGTGTGTTTTCCTATTGGAAACTTGTTTCAAGC  1045
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCCCAATGAGGTTAGTAGTGTGTTTTCCTATAGGAAACTTGTTTCAAGC  1037

seq1  CTCTGATGTGACTTATAACCTGAGCCTATGTTGCTGTCACTGCTATATGC  1095
      ||||||||||||||| ||||||| ||||||||||||||||||||| ||||
seq2  CTCTGATGTGACTTACAACCTGAACCTATGTTGCTGTCACTGCTAAATGC  1087

seq1  TGAACACAGGAAACATGATGGTATCCATAGTTTCTATTCCTTGGAAGACC  1145
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCAGGAAACATGATGGTATCCATAGTTTCTATTCCTTGGAAGACC  1137

seq1  CTATTGATGTCAATGATCTGTTTTGCTGCAGGAGAACAGACTGAATTC  1193
      |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTATTGATGTCAATGATCTGTTTTGCTGCATGAGAACAGACTGAATTC  1185