BAC Information

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BAC

Clone NameB6Ng01-083D21
ChromosomeX (Build37)
Map Location 58,590,266 - 58,740,631
singlet/doubletdoublet
Overlap geneLOC100039778
Upstream geneAtp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps, LOC627159, EG631990, LOC632000, LOC100039759, EG245440
Downstream geneLdoc1, LOC654353, EG627299, LOC666654, LOC385367, LOC671741, 4933402E13Rik, 4931400O07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083D21.bB6Ng01-083D21.g
ACCDH897560DH897561
length1,150953
definitionDH897560|Mus musculus domesticus DNA, BAC clone: B6Ng01-083D21, 5' end.DH897561|Mus musculus domesticus DNA, BAC clone: B6Ng01-083D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,739,465 - 58,740,631)(58,590,266 - 58,591,116)
sequence
gaattcttacattttaatacatacaacacaccatgtataaacagaagaaa
atattatatgcatctagtgatacagacctataatctcaggtaatagggaa
ggttgcttaaaagcacaagttcaaggctggcatcaactctaaaatgagtt
taaggcctgcctatcaaaattccatctcaaaataaataaccttttaatgg
ctaaggatagatcttaatggtagaacacctgattagcatatgtgagacac
taggtttaattgctaacactgcaaaaaaaaaaatcaaagctattgaaaga
ctacttgcccaaaacaactaaacataataataggagcaagcaaacaaaag
tggcaagggtttctactgtagtagtaatatgaaaggacatgatctagtgt
ggtatctgattggattcagaggaaaggatgaaggatgaacacaggatttg
gcttggaggagagagtgagaacagcagtaaccttatataaactttgcaaa
atacaaggattgtgctatataggaggaatgcctgcagtgtagaacaggct
gggttccagttacgtgtgacacctatttgaagacagctgggggttacaag
aagtccgaaaataagacagcttttgaaagtataaaatatttaatgacaaa
ggaattgcttagatgaaaacggagggaaagaaggggattccatgaaaata
attgagtctatggtgatgttagaggaatacgagaagagaagaaagtcata
aaacccaaagagtctatcataaatatagtgatgcaaagtgttatttgaga
aaaaagaaaatggggcattgaggagtagaaacaggatgaaagtgttgagg
atggacacgagccctttggacaaactgctcatggacaggaaatgcacagg
accaccattctttaatgtggggcttggtttactaatttaaatttagccta
gagagtaaagcagacatacagagttcctgttttatcctgtaacatgaaag
gctgacagacatgggcttgccttctcatgaacacccctgagtagctgttc
ccattcagatgcatttttatagaggcagcatgtggacagtcttacaccat
gctataaaacaccctagtcactagtccaacgctgaaaaactggactttgt

gaattctttgggtgaggcaaacttttctgtgtgttttacagtagttttac
agtgtgctacttactattagagaaataaggccaatgataaatgatgtccc
tattatttcttataacttcatggggatatataattagttcacagtcaaaa
tttatatagcaaaataataaatggagtatttattactatattttaattag
tttattataattatttttaatattttatttatgaaattactctattaaaa
atgcaaagagagatctgtagatttaaggagatttattataattacttgcc
aactttaaaagttgattaagatcatgatatgagcaaactaaaaagaaata
tagtggagcagatcttgtgacacagctctccatacccaaataccactggg
agaaagctggtctcccgggattgcagacacacctgtgagcacaggtaaga
ccagcacttcagaaattcctggcccaagagtgacctgaccagagccatca
ggacacaggaatcaagaaacagccagggaaaggatccttcctgtttcctt
atacaccctgggagctgactttgtgccacagctctccatacccaaattcc
tcctcaggagaactggtctaccaggaatactgacacacaggcttgcagga
ggcacaagccatagtcagagacagcaagaccacctaacaccagacacaat
cagttggcaagaggcaaggaaaagaacataagcaacagaaacaagggtac
ttggcatcaccagaacccagttctcccaccacagagattccttcataacc
caacacaccagaaagcaagactctgatttaaatcacatctcatgatgatg
atagaggactttagaagacataaataactcccttaaagaaatacaggaga
acacaggtaaacgggtagaagcccttaaagaggaaacacaaagatccctt
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_58739465_58740631
seq2: B6Ng01-083D21.b_44_1193 (reverse)

seq1  ACAAAGTCCAGTATTTTTTCAAGCGTTGTGACTTAAGTTGACTAGGGTGT  50
      |||||||||||   |||||| ||||||| ||||  || ||||||||||||
seq2  ACAAAGTCCAG---TTTTTC-AGCGTTG-GACT--AG-TGACTAGGGTGT  42

seq1  TTTAATAGCATGGTGTAAGACTGTTCCACATGCCTGCCTCCTTATAAGAT  100
      ||| ||||||||||||||||||| |||||||| |||||||  || || ||
seq2  TTT-ATAGCATGGTGTAAGACTG-TCCACATG-CTGCCTCTATA-AAAAT  88

seq1  GCATCTTGAATGGGAAACAGCTACTTCAGGGGTGTTCATGAGAAGGCAAG  150
      ||||| |||||||| ||||||||| |||||||||||||||||||||||||
seq2  GCATC-TGAATGGG-AACAGCTAC-TCAGGGGTGTTCATGAGAAGGCAAG  135

seq1  CCCATGTCTGTCAGCCCTTTCATGTTACAGGATAAAACAGGAACTCTGTT  200
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  CCCATGTCTGTCAG-CCTTTCATGTTACAGGATAAAACAGGAACTCTG-T  183

seq1  ATGTCTGCTTTACTCTCTAGGCTAAATTTAAATTAGTAAACCAAGCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCTTTACTCTCTAGGCTAAATTTAAATTAGTAAACCAAGCCCCA  233

seq1  CATTAAAGAATGGTGGTCCTGTGCATTTCCTGTCCATGAGCAGTTTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGAATGGTGGTCCTGTGCATTTCCTGTCCATGAGCAGTTTGTCC  283

seq1  AAAGGGCTCGTGTCCATCCTCAACACTTTCATCCTGTTTCTACTCCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTCGTGTCCATCCTCAACACTTTCATCCTGTTTCTACTCCTCAA  333

seq1  TGCCCCATTTTCTTTTTTCTCAAATAACACTTTGCATCACTATATTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCATTTTCTTTTTTCTCAAATAACACTTTGCATCACTATATTTATG  383

seq1  ATAGACTCTTTGGGTTTTATGACTTTCTTCTCTTCTCGTATTCCTCTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCTTTGGGTTTTATGACTTTCTTCTCTTCTCGTATTCCTCTAAC  433

seq1  ATCACCATAGACTCAATTATTTTCATGGAATCCCCTTCTTTCCCTCCGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATAGACTCAATTATTTTCATGGAATCCCCTTCTTTCCCTCCGTT  483

seq1  TTCATCTAAGCAATTCCTTTGTCATTAAATATTTTATACTTTCAAAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTAAGCAATTCCTTTGTCATTAAATATTTTATACTTTCAAAAGCT  533

seq1  GTCTTATTTTCGGACTTCTTGTAACCCCCAGCTGTCTTCAAATAGGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTTTCGGACTTCTTGTAACCCCCAGCTGTCTTCAAATAGGTGTC  583

seq1  ACACGTAACTGGAACCCAGCCTGTTCTACACTGCAGGCATTCCTCCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTAACTGGAACCCAGCCTGTTCTACACTGCAGGCATTCCTCCTATA  633

seq1  TAGCACAATCCTTGTATTTTGCAAAGTTTATATAAGGTTACTGCTGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAATCCTTGTATTTTGCAAAGTTTATATAAGGTTACTGCTGTTCT  683

seq1  CACTCTCTCCTCCAAGCCAAATCCTGTGTTCATCCTTCATCCTTTCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCCTCCAAGCCAAATCCTGTGTTCATCCTTCATCCTTTCCTCT  733

seq1  GAATCCAATCAGATACCACACTAGATCATGTCCTTTCATATTACTACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAATCAGATACCACACTAGATCATGTCCTTTCATATTACTACTAC  783

seq1  AGTAGAAACCCTTGCCACTTTTGTTTGCTTGCTCCTATTATTATGTTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAACCCTTGCCACTTTTGTTTGCTTGCTCCTATTATTATGTTTAG  833

seq1  TTGTTTTGGGCAAGTAGTCTTTCAATAGCTTTGATTTTTTTTTTTGCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGGGCAAGTAGTCTTTCAATAGCTTTGATTTTTTTTTTTGCAGT  883

seq1  GTTAGCAATTAAACCTAGTGTCTCACATATGCTAATCAGGTGTTCTACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAATTAAACCTAGTGTCTCACATATGCTAATCAGGTGTTCTACCA  933

seq1  TTAAGATCTATCCTTAGCCATTAAAAGGTTATTTATTTTGAGATGGAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATCTATCCTTAGCCATTAAAAGGTTATTTATTTTGAGATGGAATT  983

seq1  TTGATAGGCAGGCCTTAAACTCATTTTAGAGTTGATGCCAGCCTTGAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGCAGGCCTTAAACTCATTTTAGAGTTGATGCCAGCCTTGAACT  1033

seq1  TGTGCTTTTAAGCAACCTTCCCTATTACCTGAGATTATAGGTCTGTATCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTTAAGCAACCTTCCCTATTACCTGAGATTATAGGTCTGTATCA  1083

seq1  CTAGATGCATATAATATTTTCTTCTGTTTATACATGGTGTGTTGTATGTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGCATATAATATTTTCTTCTGTTTATACATGGTGTGTTGTATGTA  1133

seq1  TTAAAATGTAAGAATTC  1167
      |||||||||||||||||
seq2  TTAAAATGTAAGAATTC  1150

seq1: chrX_58590266_58591116
seq2: B6Ng01-083D21.g_67_916

seq1  GAATTCTTTGGGTGAGGCAAACTTTTCTGTGTGTTTTACAGTAGTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGGTGAGGCAAACTTTTCTGTGTGTTTTACAGTAGTTTTAC  50

seq1  AGTGTGCTACTTACTATTAGAGAAATAAGGCCAATGATAAATGATGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTACTTACTATTAGAGAAATAAGGCCAATGATAAATGATGTCCC  100

seq1  TATTATTTCTTATAACTTCATGGGGATATATAATTAGTTCACAGTCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTCTTATAACTTCATGGGGATATATAATTAGTTCACAGTCAAAA  150

seq1  TTTATATAGCAAAATAATAAATGGAGTATTTATTACTATATTTTAATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAGCAAAATAATAAATGGAGTATTTATTACTATATTTTAATTAG  200

seq1  TTTATTATAATTATTTTTAATATTTTATTTATGAAATTACTCTATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATAATTATTTTTAATATTTTATTTATGAAATTACTCTATTAAAA  250

seq1  ATGCAAAGAGAGATCTGTAGATTTAAGGAGATTTATTATAATTACTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGAGAGATCTGTAGATTTAAGGAGATTTATTATAATTACTTGCC  300

seq1  AACTTTAAAAGTTGATTAAGATCATGATATGAGCAAACTAAAAAGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAAAGTTGATTAAGATCATGATATGAGCAAACTAAAAAGAAATA  350

seq1  TAGTGGAGCAGATCTTGTGACACAGCTCTCCATACCCAAATACCACTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGCAGATCTTGTGACACAGCTCTCCATACCCAAATACCACTGGG  400

seq1  AGAAAGCTGGTCTCCCGGGATTGCAGACACACCTGTGAGCACAGGTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTGGTCTCCCGGGATTGCAGACACACCTGTGAGCACAGGTAAGA  450

seq1  CCAGCACTTCAGAAATTCCTGGCCCAAGAGTGACCTGACCAGAGCCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTCAGAAATTCCTGGCCCAAGAGTGACCTGACCAGAGCCATCA  500

seq1  GGACACAGGAATCAAGAAACAGCCAGGGAAAGGATCCTTCCTGTTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGGAATCAAGAAACAGCCAGGGAAAGGATCCTTCCTGTTTCCTT  550

seq1  ATACACCCTGGGAGCTGACTTTGTGCCACAGCTCTCCATACCCAAATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCCTGGGAGCTGACTTTGTGCCACAGCTCTCCATACCCAAATTCC  600

seq1  TCCTCAGGAGAACTGGTCTACCAGGAATACTGACACACAGGCTTGCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGAGAACTGGTCTACCAGGAATACTGACACACAGGCTTGCAGGA  650

seq1  GGCACAAGCCATAGTCAGAGACAGCAAGACCACCTAACACCAGACACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAGCCATAGTCAGAGACAGCAAGACCACCTAACACCAGACACAAT  700

seq1  CAGTTGGCAAGAGGCAAGGAAAAGAACATAAGCAACAGAAACAAGGGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGCAAGAGGCAAGGAAAAGAACATAAGCAACAGAAACAAGGGTAC  750

seq1  TTGGCATCACCAGAACCCAGTTCTCCCACCACAGAGATTCCTTCATAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCACCAGAACCCAGTTCTCCCACCACAGAGATTCCTTCATAACC  800

seq1  CAACACACCAGAAAAGCAAGACTCTGATTTAAATCACATCTCATGATGAT  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAACACACCAG-AAAGCAAGACTCTGATTTAAATCACATCTCATGATGAT  849

seq1  G  851
      |
seq2  G  850