BAC Information

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BAC

Clone NameB6Ng01-084H22
ChromosomeX (Build37)
Map Location 95,496,759 - 95,615,403
singlet/doubletdoublet
Overlap geneAr
Upstream geneEda2r, LOC668244
Downstream geneLOC100042324, Ophn1, Yipf6, LOC100042932, Stard8, LOC436219, Efnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084H22.bB6Ng01-084H22.g
ACCDH898431DH898432
length1,2321,154
definitionDH898431|Mus musculus domesticus DNA, BAC clone: B6Ng01-084H22, 5' end.DH898432|Mus musculus domesticus DNA, BAC clone: B6Ng01-084H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,614,137 - 95,615,403)(95,496,759 - 95,497,908)
sequence
gaattccaaaggaagatgatctttctccatagtgttgtagtgactaaaga
gagtcctaaggcagagtagtgagctgggtaacttggggtagactcaaagg
aataagcttaggggtgtgggcctcttattggctttgtgtaggcagaaaga
gaaagagtcaatgcagtgtgtgttggggaggagggttatgctgattgggg
gacctggatggaatggagttaaggaaaacaattctcttgccaggccaact
gtgtgtgctagatatttaaagaccatgctgtgatagtgggagtggagtag
ataagttccatgccttagattatttgctagtttgaacagattttaaagga
cattttagttctatataaagcacacaattttcaaatgaagatatttaagt
ctttctttgtaattgtaatgccaccctccattgcctaattgctctcctta
acacttctactgttatgttaaaaagaaatggtaaaaggaggggggggaaa
cacttgaatttgcccttatcttggagaaagaacattcagtctttgatcac
tgaatctggtgttaactattggttcttcatatgtatgttttatcatgttg
agatattgtcctattccttgtatagttagtgtatttaccataaaaatgat
cttgaattttattaaatattttaagcactcactgaaataatggtgttgtt
tttgcctttcatagttttaatgggacgtgttataatagattccttaaaaa
tatataactatcagtgaatattagtggatttcattgtgacatttctgtga
tagtgtcaagttttgatcatgtttacattctcttctatactcctatatcc
tcctcataccctttacttcttaacattgacctgactcttcttctctcaga
tcatcatgttttgggttgttcctttacatgtcagaaacattcaattactt
accttttgtctactttatttctcattacagatttaaaatgtaacttcatt
cattctttgagattttcatatgttcaatccacctctacttcccattttca
gcttctatctaagaccacctcaacacatcccctattagctatgcctcaag
acctgcaaatgaaattattcagtcttgtttacagcctcatatgccatata
acataaatttctatcctccaatcctttcaaggcttatgagattgtgatcg
aatccaggcataagttcagatggtatgactgc
gaattcatgtttatatgatctattttggattcattccttctttatcaata
gctttaatatagtatggcaattaaaacagcttccccagaaagcaggccac
attcaccgcactactcaacagactcactgagataatggaaatatcttaga
tgtctgcttttctgttatcagtcactggctacatgtggttttcaacactg
gaaatagatccagtgatactcaagcattgaatttgtattccctttacctc
aattctattcaagagtcacatagagatagtggctgtataaaatactgtaa
gactaggaaggtgctcagagaagtacatactgaaggagaacaagaggaag
tagtcataaggtatttaaaattaagaataagggccctggttctaatcaca
gctctgccactagattgtttcaccctcactagattcaacttccacatctt
tgacttgaatctttgtattaatacaagaattctcaaagttatatctaaag
gttgaattcaacttagaatatatgtatttcatgagagattttatgtggta
cacgaatgtcttctagagttgtgaaagcactaagacatttcatttctgtt
tgctaggaagaatgacaatcattattctatacatatactgaaacactgca
tttcctgggtaacttttgaatatatttgcatctgtgaaccttagataaga
tcatttctaaggactcttcctgtttgccaagctgtgaatctatgcaccac
tatagcaccccaagtatgtttctgtttaggcagagaactgagtattttca
tacgtttttgattctctatttccagatgtgatgctagctactaaattcca
ttgtcaggaatgaagattatggtcaaaggagataatactttagggattta
gactccttggagaagccacatgacaaagaacagagaatgtgaattttgta
gctaaaggaggttcagattattgggattttttacctaaattcagactaga
aaaataccagtcatatgatgttgatttattctgggaactgtaccacggca
ttctggaggcatcatcagtttgctggtgcctatgcacaagacccagtgta
agaaatggatcatccacctatcaaacattgggagttcacagccctctctc
agtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_95614137_95615403
seq2: B6Ng01-084H22.b_48_1279 (reverse)

seq1  GCAGCTCATAACCATCTGTAACTTTAGTACCTGGGGATCTGATCACCAAT  50
      |||| |||| |||||||| |||||   | |||  ||||  |||||| |  
seq2  GCAG-TCAT-ACCATCTG-AACTT--ATGCCT--GGATTCGATCACAA--  41

seq1  ATTTTTCTATTAAACCCTTTTTAAAAAAGAATTGAAGAGATAAGGAAAAA  100
           |||  ||| || |       |||| |||| || |||    | |||
seq2  -----TCTCATAAGCCTT------GAAAGGATTGGAG-GAT----AGAAA  75

seq1  TATAGTTTATAT-GCATAATGGAGCCTTGTAAACAAGACTGAAATAATTT  149
      | ||  |||||| |||||   ||| | |||||||||||||| ||||||||
seq2  TTTATGTTATATGGCATA--TGAGGC-TGTAAACAAGACTG-AATAATTT  121

seq1  CATTTGCAGGAAAATGAAGACCATAAAAGGCTGATAGGGGATGTGTTGAG  199
      ||||||||||    ||| |  ||||    ||| |||||||||||||||||
seq2  CATTTGCAGG-TCTTGAGG--CATA----GCTAATAGGGGATGTGTTGAG  164

seq1  GTGGTC-TAGATAG-AGCTGAAAATGGGAAGTAGAGGTGGATATGAACAT  247
      |||||| ||||||| ||||||||||||||||||||||||||| |||||||
seq2  GTGGTCTTAGATAGAAGCTGAAAATGGGAAGTAGAGGTGGAT-TGAACAT  213

seq1  ATGAAAATCTCAAAGAATGAATGAAGTTACATTTTAAATCTGTAATGGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGAAAATCTCAAAGAATGAATGAAGTTACATTTTAAATCTGTAATGAGA  263

seq1  AATAAAGTAGACAAAAAGGTAAGTAATTGAATGTTTCCTGACATGTAAAG  347
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  AATAAAGTAGAC-AAAAGGTAAGTAATTGAATGTTT-CTGACATGTAAAG  311

seq1  GAACAA-CCAAAACATGATGATCTGAGAGAAGAAGAGTCAGGTCAATGTT  396
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACCCAAAACATGATGATCTGAGAGAAGAAGAGTCAGGTCAATGTT  361

seq1  AAGAAGTAAAGGGTATGAGGAGGATATAGGAGTATAGAAGAGAATGTAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAAAGGGTATGAGGAGGATATAGGAGTATAGAAGAGAATGTAAA  411

seq1  CATGATCAAAACTTGACACTATCACAGAAATGTCACAATGAAATCCACTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCAAAACTTGACACTATCACAGAAATGTCACAATGAAATCCACTA  461

seq1  ATATTCACTGATAGTTATATATTTTTAAGGAATCTATTATAACACGTCCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACTGATAGTTATATATTTTTAAGGAATCTATTATAACACGTCCC  511

seq1  ATTAAAACTATGAAAGGCAAAAACAACACCATTATTTCAGTGAGTGCTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTATGAAAGGCAAAAACAACACCATTATTTCAGTGAGTGCTTA  561

seq1  AAATATTTAATAAAATTCAAGATCATTTTTATGGTAAATACACTAACTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAATAAAATTCAAGATCATTTTTATGGTAAATACACTAACTAT  611

seq1  ACAAGGAATAGGACAATATCTCAACATGATAAAACATACATATGAAGAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAATAGGACAATATCTCAACATGATAAAACATACATATGAAGAAC  661

seq1  CAATAGTTAACACCAGATTCAGTGATCAAAGACTGAATGTTCTTTCTCCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTTAACACCAGATTCAGTGATCAAAGACTGAATGTTCTTTCTCCA  711

seq1  AGATAAGGGCAAATTCAAGTGTTTCCCCCCCCTCCTTTTACCATTTCTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGGCAAATTCAAGTGTTTCCCCCCCCTCCTTTTACCATTTCTTT  761

seq1  TTAACATAACAGTAGAAGTGTTAAGGAGAGCAATTAGGCAATGGAGGGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATAACAGTAGAAGTGTTAAGGAGAGCAATTAGGCAATGGAGGGTG  811

seq1  GCATTACAATTACAAAGAAAGACTTAAATATCTTCATTTGAAAATTGTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACAATTACAAAGAAAGACTTAAATATCTTCATTTGAAAATTGTGT  861

seq1  GCTTTATATAGAACTAAAATGTCCTTTAAAATCTGTTCAAACTAGCAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATATAGAACTAAAATGTCCTTTAAAATCTGTTCAAACTAGCAAAT  911

seq1  AATCTAAGGCATGGAACTTATCTACTCCACTCCCACTATCACAGCATGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGGCATGGAACTTATCTACTCCACTCCCACTATCACAGCATGGT  961

seq1  CTTTAAATATCTAGCACACACAGTTGGCCTGGCAAGAGAATTGTTTTCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATATCTAGCACACACAGTTGGCCTGGCAAGAGAATTGTTTTCCT  1011

seq1  TAACTCCATTCCATCCAGGTCCCCCAATCAGCATAACCCTCCTCCCCAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCATTCCATCCAGGTCCCCCAATCAGCATAACCCTCCTCCCCAAC  1061

seq1  ACACACTGCATTGACTCTTTCTCTTTCTGCCTACACAAAGCCAATAAGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGCATTGACTCTTTCTCTTTCTGCCTACACAAAGCCAATAAGAG  1111

seq1  GCCCACACCCCTAAGCTTATTCCTTTGAGTCTACCCCAAGTTACCCAGCT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACCCCTAAGCTTATTCCTTTGAGTCTACCCCAAGTTACCCAGCT  1161

seq1  CACTACTCTGCCTTAGGACTCTCTTTAGTCACTACAACACTATGGAGAAA  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTCTGCCTTAGGACTCTCTTTAGTCACTACAACACTATGGAGAAA  1211

seq1  GATCATCTTCCTTTGGAATTC  1267
      |||||||||||||||||||||
seq2  GATCATCTTCCTTTGGAATTC  1232

seq1: chrX_95496759_95497908
seq2: B6Ng01-084H22.g_67_1220

seq1  GAATTCATGTTTATATGATCTATTTTGGATTCATTCCTTCTTTATCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTTATATGATCTATTTTGGATTCATTCCTTCTTTATCAATA  50

seq1  GCTTTAATATAGTATGGCAATTAAAACAGCTTCCCCAGAAAGCAGGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATATAGTATGGCAATTAAAACAGCTTCCCCAGAAAGCAGGCCAC  100

seq1  ATTCACCGCACTACTCAACAGACTCACTGAGATAATGGAAATATCTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCGCACTACTCAACAGACTCACTGAGATAATGGAAATATCTTAGA  150

seq1  TGTCTGCTTTTCTGTTATCAGTCACTGGCTACATGTGGTTTTCAACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTTTTCTGTTATCAGTCACTGGCTACATGTGGTTTTCAACACTG  200

seq1  GAAATAGATCCAGTGATACTCAAGCATTGAATTTGTATTCCCTTTACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGATCCAGTGATACTCAAGCATTGAATTTGTATTCCCTTTACCTC  250

seq1  AATTCTATTCAAGAGTCACATAGAGATAGTGGCTGTATAAAATACTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTCAAGAGTCACATAGAGATAGTGGCTGTATAAAATACTGTAA  300

seq1  GACTAGGAAGGTGCTCAGAGAAGTACATACTGAAGGAGAACAAGAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGAAGGTGCTCAGAGAAGTACATACTGAAGGAGAACAAGAGGAAG  350

seq1  TAGTCATAAGGTATTTAAAATTAAGAATAAGGGCCCTGGTTCTAATCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATAAGGTATTTAAAATTAAGAATAAGGGCCCTGGTTCTAATCACA  400

seq1  GCTCTGCCACTAGATTGTTTCACCCTCACTAGATTCAACTTCCACATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCACTAGATTGTTTCACCCTCACTAGATTCAACTTCCACATCTT  450

seq1  TGACTTGAATCTTTGTATTAATACAAGAATTCTCAAAGTTATATCTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGAATCTTTGTATTAATACAAGAATTCTCAAAGTTATATCTAAAG  500

seq1  GTTGAATTCAACTTAGAATATATGTATTTCATGAGAGATTTTATGTGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTCAACTTAGAATATATGTATTTCATGAGAGATTTTATGTGGTA  550

seq1  CACGAATGTCTTCTAGAGTTGTGAAAGCACTAAGACATTTCATTTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAATGTCTTCTAGAGTTGTGAAAGCACTAAGACATTTCATTTCTGTT  600

seq1  TGCTAGGAAGAATGACAATCATTATTCTATACATATACTGAAACACTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAAGAATGACAATCATTATTCTATACATATACTGAAACACTGCA  650

seq1  TTTCCTGGGTAACTTTTGAATATATTTGCATCTGTGAACCTTAGATAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGGTAACTTTTGAATATATTTGCATCTGTGAACCTTAGATAAGA  700

seq1  TCATTTCTAAGGACTCTTCCTGTTTGCCAAGCTGTGAATCTATGCACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTAAGGACTCTTCCTGTTTGCCAAGCTGTGAATCTATGCACCAC  750

seq1  TATAGCACCCCAAGTATGTTTCTGTTTAGGCAGAGAACTGAGTATTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCACCCCAAGTATGTTTCTGTTTAGGCAGAGAACTGAGTATTTTCA  800

seq1  TACGTTTTTGATTCTCTATTTCCAGATGTGATGCTAGCTACTAAATTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTTTGATTCTCTATTTCCAGATGTGATGCTAGCTACTAAATTCCA  850

seq1  TTGTCAGGAATGAAGATTATGGTCAAAGGAGATAATACTTTAGGGATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGGAATGAAGATTATGGTCAAAGGAGATAATACTTTAGGGATTTA  900

seq1  GACTCCTTGGAGAAGCCACATGACAAAGAACAGAGAATGTGAATTTTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTGGAGAAGCCACATGACAAAGAACAGAGAATGTGAATTTTGTA  950

seq1  GCTAAAGGAGGTTCAGATTATTGGGATTATTTTACCTAAATTCAAGACTA  1000
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  GCTAAAGGAGGTTCAGATTATTGGGATT-TTTTACCTAAATTC-AGACTA  998

seq1  G-AAAATACCAGTCATAAGGATG-TGATTTA-TCTGGGAACTGTACCAGG  1047
      | |||||||||||||| | |||| ||||||| ||||||||||||||||  
seq2  GAAAAATACCAGTCAT-ATGATGTTGATTTATTCTGGGAACTGTACCA-C  1046

seq1  GGCATTCTGGAGGCATCATCAGTTTGCT-GTG-CTATGCACAAGACCCAG  1095
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  GGCATTCTGGAGGCATCATCAGTTTGCTGGTGCCTATGCACAAGACCCAG  1096

seq1  TGTAAGAAATGGATTCAT-CAACTATCAAAACATTGGGAGTGC-CAGC--  1141
      ||||||||||||| |||| || ||||| ||||||||||||| | ||||  
seq2  TGTAAGAAATGGA-TCATCCACCTATC-AAACATTGGGAGTTCACAGCCC  1144

seq1  -CTCTCAGTT  1150
       |||||||||
seq2  TCTCTCAGTT  1154