BAC Information

Click to search

BAC

Clone NameB6Ng01-084K06
ChromosomeX (Build37)
Map Location 157,796,713 - 157,928,043
singlet/doubletdoublet
Overlap genePrkaca-ps1
Upstream geneGpr64, Phka2, Ppef1, Rs1, Gja6, Scml2, LOC414364
Downstream geneRai2, Gm47, Nhs, Reps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084K06.bB6Ng01-084K06.g
ACCDH898539DH898540
length1,0991,077
definitionDH898539|Mus musculus domesticus DNA, BAC clone: B6Ng01-084K06, 5' end.DH898540|Mus musculus domesticus DNA, BAC clone: B6Ng01-084K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,926,924 - 157,928,043)(157,796,713 - 157,797,812)
sequence
gaattcctccatattttcattcatcactccaattaattatcaataacaca
gtagccctatcagttgtcttcttattgggctaattcctggtaaattgggg
gagatgatagaggttattgtaaacatcaaattcttaaataaaaagctcta
ttcctattgactacattggattcctaccagaatgacctcaacatttggtt
cttgactgggagttagcaaacttctgtaaaaagttagtgcactgggggga
agaatgatgcaaaagctgttaatatgctgatccccagggcttctattgag
tgtttcaattcatggctatgatatgtgcctccatttatttaggcctccct
tgatttcttacatcacccccattgtaattttcagcctgtaaatcttgctt
atgttctgttaaatttatatattgttgctcttttggtgtgataatacagg
gttttacatttctgctctctcgtgtttttggtaagtatatagaaatataa
cttatctctatgtgttgagtttatatcctatgatcttgcactcagttact
ggggacttgggggcttctttaggatttttgttgttgtagacaatcatgtc
ctcagcaaaaacaaacaaacaaacccaaaaaaccaaaaaatgaaaaaaag
tctatctctttccctaatctatgtgtcctttatttctttaccctttctta
ttactgttgtcagaatctctggggttatgatgaacaagaggcattaatct
gattcccagggtgagtaaggaagcattcagtttttcttccatcatctgtg
atgctatgtttgtgggttttcatacatgccctttatcaatctaaaaagtc
ccctgtggttccttttaaccatccttcagtgtttttgtgatcacttcttt
gatgagtatgttctcatacttattgtggaagattgtgaaaaaaaaatata
tattatataattcccattttttagggaatgcatggtgaaaattctgggtt
tcttacattgtggatgattgtgttgtgcaagtgttagaagaatatgtgac
tcaacgtcaactaagagattttaatcgcatgttgttcgatgttcaggcc
gaattcaaacaaacaaacaacaacaacaacaacaacaacaacaacaacaa
caaacaattggagcttcatataaataagattcatatcaaccaaaatactg
acaaatgcaatttcttttgagggaacatgggtaaattttctaaacccagg
ttcattctccctaacttaatgcctttctttggtgcttttttaaagcgttt
atttttagaaggagcttaccttctatagtgatgtttttcctttgtttaaa
tggcacattccatagtttgggtgattttcttaggttctgtgaaattgaat
tattatgtaagtatatcaacctttttctgactcttgataaatttattagg
ctaatctcccagaattaagtcttcaggcccattgagatgcttctaaataa
ttcactctcttgaatattaaatgtatatgattcaacatatgtactcctac
atattagataatgactgctatggaacaatattttttgatttgtaagaatc
ataacatatttctctgagacattttgtccacaaataatcttttgtcatac
ataatgtgtaaaaatttttcaattactattggtttgaattattatggatc
tcaggaagatgctaataatctataaaaattgagagatgaaaaaagcttaa
caatttttcagttctaataagatatctaaaatatggtacctatgacaatt
ttaaatttgttgactgtaaaaaggtgaacatattactaaagagaaagcct
actttttaaagcttaaatgcatcaataagaattatgttgcttatttttga
aaaattattttttgagtaaggaaataatacataaaaatcatttagatata
ctcaatttagttttactattattgcataccaaaagtaagcaggaaacaaa
gtcatcatttgataatgtaacacaaatactatgccagtagtacatctctt
tcttatgaggctcataatctactaaatttaaaatttaatttcagtacatt
atattattccatatattgttatcatatcttccctcctcagtctcctgatc
tctcacctcttaatctacccaccttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_157926924_157928043
seq2: B6Ng01-084K06.b_44_1142 (reverse)

seq1  GGCCTGAACATACTGACAAACTTGCTGATTTTAAATTCTTCTTTAGTTGG  50
      |||||||||||   ||  ||| ||| ||  ||||| |||   ||||||| 
seq2  GGCCTGAACAT--CGAACAACATGC-GA--TTAAAATCT--CTTAGTTGA  43

seq1  CTGTTGAGTTCCAACTATTCTTCCTACACATGCTACAACCACAATCCTTC  100
      | |||||||  ||  ||||||||  |||| ||| |||| |||||| | ||
seq2  C-GTTGAGT--CACATATTCTTCTAACACTTGC-ACAA-CACAAT-CATC  87

seq1  CACAATGTAAGGAAACCCAGAATTTTTCACCATTGCATTCCCTAAAAAAA  150
      |||||||||| ||||||||||| ||||||||| |||||||||| ||||||
seq2  CACAATGTAA-GAAACCCAGAA-TTTTCACCA-TGCATTCCCT-AAAAAA  133

seq1  TGGGGAATATATATATATATATTTTTTTTTTTCCCAATCTTCCACAATAA  200
      |||| | ||||||   |||||| |||||||||| ||||||||||||||||
seq2  TGGGAATTATATA---ATATATATTTTTTTTTCACAATCTTCCACAATAA  180

seq1  GTATGAGAACATACCTCATTAAAAGAAGTGATCACAAAAACACTGAAGGA  250
      ||||||||||||| |||| | |||||||||||||||||||||||||||||
seq2  GTATGAGAACATA-CTCA-TCAAAGAAGTGATCACAAAAACACTGAAGGA  228

seq1  TGGTTAAAAGGAACCACAGGGGACTTTTTAGATTGATAAAGGGCATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAAGGAACCACAGGGGACTTTTTAGATTGATAAAGGGCATGTAT  278

seq1  GAAAA-CCACAAACATAGCATCACAGATGATGGAAGAAAAACTGAATGCT  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCACAAACATAGCATCACAGATGATGGAAGAAAAACTGAATGCT  328

seq1  TCCTTACTCACCCTGGGAATCAGATTAATGCCTCTTGTTCATCATAACCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTCACCCTGGGAATCAGATTAATGCCTCTTGTTCATCATAACCC  378

seq1  CAGAGATTCTGACAACAGTAATAAGAAAGGGTAAAGAAATAAAGGACACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTCTGACAACAGTAATAAGAAAGGGTAAAGAAATAAAGGACACA  428

seq1  TAGATTAGGGAAAGAGATAGACTTTTTTTCATTTTTTGGTTTTTTGGGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAGGGAAAGAGATAGACTTTTTTTCATTTTTTGGTTTTTTGGGTT  478

seq1  TGTTTGTTTGTTTTTGCTGAGGACATGATTGTCTACAACAACAAAAATCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTTGCTGAGGACATGATTGTCTACAACAACAAAAATCC  528

seq1  TAAAGAAGCCCCCAAGTCCCCAGTAACTGAGTGCAAGATCATAGGATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGCCCCCAAGTCCCCAGTAACTGAGTGCAAGATCATAGGATATA  578

seq1  AACTCAACACATAGAGATAAGTTATATTTCTATATACTTACCAAAAACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAACACATAGAGATAAGTTATATTTCTATATACTTACCAAAAACAC  628

seq1  GAGAGAGCAGAAATGTAAAACCCTGTATTATCACACCAAAAGAGCAACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCAGAAATGTAAAACCCTGTATTATCACACCAAAAGAGCAACAA  678

seq1  TATATAAATTTAACAGAACATAAGCAAGATTTACAGGCTGAAAATTACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATTTAACAGAACATAAGCAAGATTTACAGGCTGAAAATTACAA  728

seq1  TGGGGGTGATGTAAGAAATCAAGGGAGGCCTAAATAAATGGAGGCACATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGATGTAAGAAATCAAGGGAGGCCTAAATAAATGGAGGCACATA  778

seq1  TCATAGCCATGAATTGAAACACTCAATAGAAGCCCTGGGGATCAGCATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCCATGAATTGAAACACTCAATAGAAGCCCTGGGGATCAGCATAT  828

seq1  TAACAGCTTTTGCATCATTCTTCCCCCCAGTGCACTAACTTTTTACAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTTTTGCATCATTCTTCCCCCCAGTGCACTAACTTTTTACAGAA  878

seq1  GTTTGCTAACTCCCAGTCAAGAACCAAATGTTGAGGTCATTCTGGTAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTAACTCCCAGTCAAGAACCAAATGTTGAGGTCATTCTGGTAGGA  928

seq1  ATCCAATGTAGTCAATAGGAATAGAGCTTTTTATTTAAGAATTTGATGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGTAGTCAATAGGAATAGAGCTTTTTATTTAAGAATTTGATGTT  978

seq1  TACAATAACCTCTATCATCTCCCCCAATTTACCAGGAATTAGCCCAATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAACCTCTATCATCTCCCCCAATTTACCAGGAATTAGCCCAATAA  1028

seq1  GAAGACAACTGATAGGGCTACTGTGTTATTGATAATTAATTGGAGTGATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAACTGATAGGGCTACTGTGTTATTGATAATTAATTGGAGTGATG  1078

seq1  AATGAAAATATGGAGGAATTC  1120
      |||||||||||||||||||||
seq2  AATGAAAATATGGAGGAATTC  1099

seq1: chrX_157796713_157797812
seq2: B6Ng01-084K06.g_68_1144

seq1  GAATTCAAACAAACAAACAACAACAACAACAACAACAACAACAACAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAAACAAACAACAACAACAACAACAACAACAACAACAACAA  50

seq1  CAAACAATTGGAGCTTCATATAAATAAGATTCATATCAACCAAAATACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATTGGAGCTTCATATAAATAAGATTCATATCAACCAAAATACTG  100

seq1  ACAAATGCAATTTCTTTTGAGGGAACATGGGTAAATTTTCTAAACCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCAATTTCTTTTGAGGGAACATGGGTAAATTTTCTAAACCCAGG  150

seq1  TTCATTCTCCCTAACTTAATGCCTTTCTTTGGTGCTTTTTTAAAGCGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTCCCTAACTTAATGCCTTTCTTTGGTGCTTTTTTAAAGCGTTT  200

seq1  ATTTTTAGAAGGAGCTTACCTTCTATAGTGATGTTTTTCCTTTGTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGAAGGAGCTTACCTTCTATAGTGATGTTTTTCCTTTGTTTAAA  250

seq1  TGGCACATTCCATAGTTTGGGTGATTTTCTTAGGTTCTGTGAAATTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATTCCATAGTTTGGGTGATTTTCTTAGGTTCTGTGAAATTGAAT  300

seq1  TATTATGTAAGTATATCAACCTTTTTCTGACTCTTGATAAATTTATTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGTAAGTATATCAACCTTTTTCTGACTCTTGATAAATTTATTAGG  350

seq1  CTAATCTCCCAGAATTAAGTCTTCAGGCCCATTGAGATGCTTCTAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTCCCAGAATTAAGTCTTCAGGCCCATTGAGATGCTTCTAAATAA  400

seq1  TTCACTCTCTTGAATATTAAATGTATATGATTCAACATATGTACTCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTCTTGAATATTAAATGTATATGATTCAACATATGTACTCCTAC  450

seq1  ATATTAGATAATGACTGCTATGGAACAATATTTTTTGATTTGTAAGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGATAATGACTGCTATGGAACAATATTTTTTGATTTGTAAGAATC  500

seq1  ATAACATATTTCTCTGAGACATTTTGTCCACAAATAATCTTTTGTCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATATTTCTCTGAGACATTTTGTCCACAAATAATCTTTTGTCATAC  550

seq1  ATAATGTGTAAAAA-TTTTCAATTACTATTGGTTTGAATTATTATGGATC  599
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATAATGTGTAAAAATTTTTCAATTACTATTGGTTTGAATTATTATGGATC  600

seq1  TCAGGAAGATGCTAATAATCTATAAAAATTGAGAGATGAAAAAAGCTTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGATGCTAATAATCTATAAAAATTGAGAGATGAAAAAAGCTTAA  650

seq1  CAATTTTTCAGTTCTAATAAGATATCTAAAATATGGTACCTATGACAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTCAGTTCTAATAAGATATCTAAAATATGGTACCTATGACAATT  700

seq1  TTAAATTTGTTGACTGTAAAAAGGTGAACATATTACTAAAGAGAAAGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTGTTGACTGTAAAAAGGTGAACATATTACTAAAGAGAAAGCCT  750

seq1  ACTTTTTAAAGCTTAAATGCATCAATAAGAATTATGTTGCTTATTTTTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAAAGCTTAAATGCATCAATAAGAATTATGTTGCTTATTTTTGA  800

seq1  AAAATTATTTTTTGAGTAAGGAAATAATACATAAAAATCATTTAGAATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAATTATTTTTTGAGTAAGGAAATAATACATAAAAATCATTTAG-ATAT  849

seq1  ACTCAATTTAGTTTTACTATTTATTGCATACCAAAAGTTAGCAGGAAACA  899
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  ACTCAATTTAGTTTTACTA-TTATTGCATACCAAAAGTAAGCAGGAAACA  898

seq1  AAGTCATCATTTTGAATAATGGTAACACAAATACTTATGCCAGTAGTACA  949
      ||||||||||||   ||||| ||||||||||||| |||||||||||||||
seq2  AAGTCATCATTT--GATAAT-GTAACACAAATAC-TATGCCAGTAGTACA  944

seq1  TCTCATTTCTTATGATGCCTCATAATCTACTAAAATTTTAAAAATTTAAT  999
      |||| |||||||||| | ||||||||||||||||   || ||||||||| 
seq2  TCTC-TTTCTTATGA-GGCTCATAATCTACTAAA---TTTAAAATTTAA-  988

seq1  TTTCAAGTTACATTATAATTATTTCAATATATTGTTATCATATTCTTTCC  1049
      |||||   |||||||| |||| ||| |||||||||||||||| ||||  |
seq2  TTTCA--GTACATTAT-ATTA-TTCCATATATTGTTATCATA-TCTT--C  1031

seq1  CCTCCTCCAAGTCCTCCCTGATCCTCTCACCTCCTTATCTACCCATCTTA  1099
      |||||||  ||||   |||||| |||||||||| | ||||||||| ||||
seq2  CCTCCTC--AGTC--TCCTGAT-CTCTCACCTCTTAATCTACCCACCTTA  1076

seq1  T  1100
      |
seq2  T  1077