BAC Information

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BAC

Clone NameB6Ng01-085K21
ChromosomeX (Build37)
Map Location 43,257,039 - 43,409,018
singlet/doubletdoublet
Overlap genenone
Upstream gene1110059M19Rik, LOC100040038, EG385346
Downstream geneLOC100040075, Actrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085K21.bB6Ng01-085K21.g
ACCDH899289DH899290
length1,2001,022
definitionDH899289|Mus musculus domesticus DNA, BAC clone: B6Ng01-085K21, 5' end.DH899290|Mus musculus domesticus DNA, BAC clone: B6Ng01-085K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,407,809 - 43,409,018)(43,257,039 - 43,258,061)
sequence
gaattcaaagacaattcatcacaaaaaattatctggttcaaaatatcaga
gctgtctatgatgacaaaagtgaacatgcttgccctgaagcaaaactgct
gaatggcggtaacagtaaatcatgtccacaaacatggataaatgaatatt
ttgaaatattgttataataagtgtagtgaaatactttaacggtttacatt
tttgtctttgataaaattttactcaggaatatgtaacattcagagcagta
aagagtaattttccacatactaaattctacttgagcttagttatatgaaa
caactgtctttttattattattattctttcatttgtcagaaaaagtattt
cctctggtatactcttcatattatagattcccaattatgctttcatattg
ctgacacaaccgtgcatcattatagaacatcacacaactatgggcaaact
atttgttcattaaatcctaattaagaaagtccaaaccttaaatgcatttc
catatatacttatgaaatcataataataatgggaagtttctaaaacatgc
atttgtaaacgttatgtagtttgtttgtttgtttttgctgtaatagacaa
tgtttctctctcataaattgaattagaatgtttgttataaaactgaaaat
ggtcacttcaattctttttcaagattttatttgattttatttgattgttc
tagatcctataggcggatctgttgtaggagttctatgattttcactagtg
taccttaaaacatctgattctgcagacacttctcaaatttaaaaaagtca
aactcaatcatggctttgaggtaaagctcagtaacaatgttttcacagcc
agtgacagatatattcaatgttagtaggtaatatattttggcagatttgt
cagtaatgtggtttttttgctgtcaatgtgatttgttttgctcgaaatgt
atgtctcttataggtttgaaaaataagtctaatatgagtatctcctagag
agagttcatttctattgctagctattttactaaataatggaaaagtttgt
catgaaataaaaatttgaaaggatctttcacttaaactttagcttttccc
tcacatttaaatgtcagaaatgtccagtttgcatttcttttctggcttga
aatccaaggagaactatctctaaagtatcctttatagctactaaacgctt

gaattcaacaaaaaaataaatcaatatgtttaaatataagaacactattg
aaaacaacaaattgtttaagtgcatctttgtgcctatcaatttatgaaca
gataaaggataagtggtattcacacagtgcaatactatttagtttcacag
tttataaactttttggtgtagtaaaaatggacatagagacaataatgcca
attaaaataagcatgatatataacacatgtatcatatcatttctctcaaa
tatcgagtccaaaatgactgagctcataaagccataaagcaaagttttga
tttctaaatgttacagaaggtatagtaagaatgttagttatattacaaga
attagttttagtgttacattttgcagctatatgaatagagacgaggctat
aaaattatagaagtcatttttgtttctttgagttttttgatgttttattt
tgatttattttttcaagacagagtctctctacatggccctctctgtccta
gaactcattatgcagaccaggttggccttgatctcagagaaatttgcctc
cctctgtcccctgaatgctggtattcaaaagttatgtcccaccacacacg
catttagcaggcatatcgttctagtcacagtgtcatgatggatgttaaag
ctaataaaatcctaagtatctttggattcttcccttcacaaggcataaat
gtatgagtaactgatctcatagacacatgcaatggttacgccaaatagta
atttattctaaacctctttttaaagtttaattactttatatgtttacact
ccagatttttattcccctccacctgccaatacaccctccgattgtttcca
catcccatacatctatccacccccttaccctcttccccatctgacctcta
aactccctgggactccagtatcttgagggttaggtacatcatctctgaat
gacaagatcagctttctctactatatgtgtgttgggggcatcatatcagc
tggatacgctgtttgtttgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_43407809_43409018
seq2: B6Ng01-085K21.b_48_1247 (reverse)

seq1  AAGCTGTTTAGTAGCTCTATAAAGAGTAC-TTAGAGATAGTCTTCCTTTT  49
      |||| |||||||||  ||||||||  ||| |||||||||||  |||   |
seq2  AAGC-GTTTAGTAG--CTATAAAGGATACTTTAGAGATAGTTCTCC---T  44

seq1  TGTATTTCCAAGCAAGAAAAGAATTTC-AACTGGGCTATTTCTGTGAACA  98
      || |||| ||||| ||||||||| | | |||||| | |||||||   |||
seq2  TGGATTT-CAAGCCAGAAAAGAAATGCAAACTGGAC-ATTTCTG---ACA  89

seq1  TTTAAATGTG-GAGGAAAGCTACAGTTTAAGTGAAAGAT-CTTTCAAATT  146
      |||||||||| | | ||||||| |||||||||||||||| ||||||||||
seq2  TTTAAATGTGAGGGAAAAGCTAAAGTTTAAGTGAAAGATCCTTTCAAATT  139

seq1  TTTATTTCATGACAAACTTTTTCATTATTTAGTAAAATAGCTAGCAATAG  196
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTATTTCATGACAAACTTTTCCATTATTTAGTAAAATAGCTAGCAATAG  189

seq1  AAATGAAACTCTCTCTAGGAGATACTCATATTAGACTTATTTTTTCAAAC  246
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATG-AACTCTCTCTAGGAGATACTCATATTAGACTTA-TTTTTCAAAC  237

seq1  CTATAAGAGACATACATTTCGAGCAAAACAAATCACATTTGACAGCAAAA  296
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTATAAGAGACATACATTTCGAGCAAAACAAATCACA-TTGACAGCAAAA  286

seq1  AAACCACATTACTGACAAATCTGCCAAAATATATTACCTACTAACATTGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACATTACTGACAAATCTGCCAAAATATATTACCTACTAACATTGA  336

seq1  ATATATCTGTCACTGGCTGTGAAAACATTGTTACTGAGCTTTACCTCAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTGTCACTGGCTGTGAAAACATTGTTACTGAGCTTTACCTCAAA  386

seq1  GCCATGATTGAGTTTGACTTTTTTAAATTTGAGAAGTGTCTGCAGAATCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATTGAGTTTGACTTTTTTAAATTTGAGAAGTGTCTGCAGAATCA  436

seq1  GATGTTTTAAGGTACACTAGTGAAAATCATAGAACTCCTACAACAGATCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTAAGGTACACTAGTGAAAATCATAGAACTCCTACAACAGATCC  486

seq1  GCCTATAGGATCTAGAACAATCAAATAAAATCAAATAAAATCTTGAAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAGGATCTAGAACAATCAAATAAAATCAAATAAAATCTTGAAAAA  536

seq1  GAATTGAAGTGACCATTTTCAGTTTTATAACAAACATTCTAATTCAATTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAAGTGACCATTTTCAGTTTTATAACAAACATTCTAATTCAATTT  586

seq1  ATGAGAGAGAAACATTGTCTATTACAGCAAAAACAAACAAACAAACTACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGAGAAACATTGTCTATTACAGCAAAAACAAACAAACAAACTACA  636

seq1  TAACGTTTACAAATGCATGTTTTAGAAACTTCCCATTATTATTATGATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTTTACAAATGCATGTTTTAGAAACTTCCCATTATTATTATGATTT  686

seq1  CATAAGTATATATGGAAATGCATTTAAGGTTTGGACTTTCTTAATTAGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTATATATGGAAATGCATTTAAGGTTTGGACTTTCTTAATTAGGA  736

seq1  TTTAATGAACAAATAGTTTGCCCATAGTTGTGTGATGTTCTATAATGATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGAACAAATAGTTTGCCCATAGTTGTGTGATGTTCTATAATGATG  786

seq1  CACGGTTGTGTCAGCAATATGAAAGCATAATTGGGAATCTATAATATGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTGTGTCAGCAATATGAAAGCATAATTGGGAATCTATAATATGAA  836

seq1  GAGTATACCAGAGGAAATACTTTTTCTGACAAATGAAAGAATAATAATAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATACCAGAGGAAATACTTTTTCTGACAAATGAAAGAATAATAATAA  886

seq1  TAAAAAGACAGTTGTTTCATATAACTAAGCTCAAGTAGAATTTAGTATGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGACAGTTGTTTCATATAACTAAGCTCAAGTAGAATTTAGTATGT  936

seq1  GGAAAATTACTCTTTACTGCTCTGAATGTTACATATTCCTGAGTAAAATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTACTCTTTACTGCTCTGAATGTTACATATTCCTGAGTAAAATT  986

seq1  TTATCAAAGACAAAAATGTAAACCGTTAAAGTATTTCACTACACTTATTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAGACAAAAATGTAAACCGTTAAAGTATTTCACTACACTTATTA  1036

seq1  TAACAATATTTCAAAATATTCATTTATCCATGTTTGTGGACATGATTTAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATATTTCAAAATATTCATTTATCCATGTTTGTGGACATGATTTAC  1086

seq1  TGTTACCGCCATTCAGCAGTTTTGCTTCAGGGCAAGCATGTTCACTTTTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCGCCATTCAGCAGTTTTGCTTCAGGGCAAGCATGTTCACTTTTG  1136

seq1  TCATCATAGACAGCTCTGATATTTTGAACCAGATAATTTTTTGTGATGAA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATAGACAGCTCTGATATTTTGAACCAGATAATTTTTTGTGATGAA  1186

seq1  TTGTCTTTGAATTC  1210
      ||||||||||||||
seq2  TTGTCTTTGAATTC  1200

seq1: chrX_43257039_43258061
seq2: B6Ng01-085K21.g_69_1090

seq1  GAATTCAACAAAAAAATAAATCAATATGTTTAAATATAAGAACACTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAAAAAATAAATCAATATGTTTAAATATAAGAACACTATTG  50

seq1  AAAACAACAAATTGTTTAAGTGCATCTTTGTGCCTATCAATTTATGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAAATTGTTTAAGTGCATCTTTGTGCCTATCAATTTATGAACA  100

seq1  GATAAAGGATAAGTGGTATTCACACAGTGCAATACTATTTAGTTTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGATAAGTGGTATTCACACAGTGCAATACTATTTAGTTTCACAG  150

seq1  TTTATAAACTTTTTGGTGTAGTAAAAATGGACATAGAGACAATAATGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACTTTTTGGTGTAGTAAAAATGGACATAGAGACAATAATGCCA  200

seq1  ATTAAAATAAGCATGATATATAACACATGTATCATATCATTTCTCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAAGCATGATATATAACACATGTATCATATCATTTCTCTCAAA  250

seq1  TATCGAGTCCAAAATGACTGAGCTCATAAAGCCATAAAGCAAAGTTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGAGTCCAAAATGACTGAGCTCATAAAGCCATAAAGCAAAGTTTTGA  300

seq1  TTTCTAAATGTTACAGAAGGTATAGTAAGAATGTTAGTTATATTACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAATGTTACAGAAGGTATAGTAAGAATGTTAGTTATATTACAAGA  350

seq1  ATTAGTTTTAGTGTTACATTTTGCAGCTATATGAATAGAGACGAGGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTTAGTGTTACATTTTGCAGCTATATGAATAGAGACGAGGCTAT  400

seq1  AAAATTATAGAAGTCATTTTTGTTTCTTTGAGTTTTTTGATGTTTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAGAAGTCATTTTTGTTTCTTTGAGTTTTTTGATGTTTTATTT  450

seq1  TGATTTATTTTTTCAAGACAGAGTCTCTCTACATGGCCCTCTCTGTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATTTTTTCAAGACAGAGTCTCTCTACATGGCCCTCTCTGTCCTA  500

seq1  GAACTCATTATGCAGACCAGGTTGGCCTTGATCTCAGAGAAATTTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATTATGCAGACCAGGTTGGCCTTGATCTCAGAGAAATTTGCCTC  550

seq1  CCTCTGTCCCCTGAATGCTGGTATTCAAAAGTTATGTCCCACCACACACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCCCCTGAATGCTGGTATTCAAAAGTTATGTCCCACCACACACG  600

seq1  CA-TTAGCAGGCATATCGTTCTAGTCACAGTGTCATGATGGATGTTAAAG  649
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCAGGCATATCGTTCTAGTCACAGTGTCATGATGGATGTTAAAG  650

seq1  CTAATAAAATCCTAAGTATC-TTGGATTCTTCCCTTCACAAGGCATAAAT  698
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTAATAAAATCCTAAGTATCTTTGGATTCTTCCCTTCACAAGGCATAAAT  700

seq1  GTATGAGTAACTGATCTCATAGACACATGCAATGGTTACGCCAAATAGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTAACTGATCTCATAGACACATGCAATGGTTACGCCAAATAGTA  750

seq1  ATTCATTCTAAACCTCTTTTTAAAG-TTAATTAC-TTATATGTTTACACT  796
      ||| ||||||||||||||||||||| |||||||| |||||||||||||||
seq2  ATTTATTCTAAACCTCTTTTTAAAGTTTAATTACTTTATATGTTTACACT  800

seq1  CCAGA-TTTTATTCCCCTCCACCTGCCAATACACCCTCCGATTG-TTCCA  844
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAGATTTTTATTCCCCTCCACCTGCCAATACACCCTCCGATTGTTTCCA  850

seq1  CATCCCATACATCTATCCACCCCCTCACCCTCTTCCCCATCTGACCTCTA  894
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATCCCATACATCTATCCACCCCCTTACCCTCTTCCCCATCTGACCTCTA  900

seq1  AACTCCCTGGGGACTCCAGTATCTTGAGGGTTAGGTACATCATCTCTGAA  944
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCT-GGGACTCCAGTATCTTGAGGGTTAGGTACATCATCTCTGAA  949

seq1  TGAACACAGATCAGGCTTTCCTCTACTATATGTGTGTTGGGGGGCATCAT  994
      || ||| |||||| ||||| |||||||||||||||||| |||||||||||
seq2  TG-ACA-AGATCA-GCTTT-CTCTACTATATGTGTGTT-GGGGGCATCAT  994

seq1  ATCAGCTGGAGTACGCTGTTTGTTTGTCC  1023
      |||||||||| ||||||||||||||||||
seq2  ATCAGCTGGA-TACGCTGTTTGTTTGTCC  1022