BAC Information

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BAC

Clone NameB6Ng01-086C05
ChromosomeX (Build37)
Map Location 18,301,827 - 18,439,262
singlet/doubletdoublet
Overlap geneLOC100043098, EG628855
Upstream geneEG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik
Downstream geneLOC385333, EG628871, LOC100043953, BC049702, LOC675558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086C05.bB6Ng01-086C05.g
ACCDH899619DH899620
length9981,118
definitionDH899619|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C05, 5' end.DH899620|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,438,256 - 18,439,262)(18,301,827 - 18,302,977)
sequence
gaattccaaggagctggagagatggctccacagttagagcactgaatgct
cttccagatatccagtgtttaattcttaacaacaacatggtgactcaaaa
ccatcttaatgagatctgatgctctcttctggtgtgtctgatacatcagt
gtgcttatgtacatagaataagtaactttaaaaaaataatgaatgtcaaa
attcttacttcttagtccatgaggctttatatagagattctacttggttt
attcttggcaccttcagagagtataaaacaagaaacctagagacagagta
aaattaaaaactaaagagttggtatgtgctggatataggtttattacttt
tgcagtattgtaaagttgaacttgtgaaccgtgtatatttcccttataag
gagaacaatgaatcttagttatgctaatgtaaaatatttgttttggtagt
ataaaaaatattatgaaaaaaagagcaaaagatctttttatgcctgaaaa
gattcttataaataggttacttactttaaaaaaatatccatgtgttttta
gacttttcgagtttacttttcaatccatgattgcattaaaatagggtttt
cagtttgggctagacataaattccttctggaatcttcgtttgtatttttt
ctttgttgttatttttgtttgtttgtttgtttgtttgttgcttttaagac
tcaggaacgttccccttataattatagcaaataaaataacccactactca
gtatttttatctttagacaaaatgaaataagagcaccagattaatcttga
tatgttttgtgatgtggtggcatgatgctgaaacatccccattgagcacc
agccatatgactggatctagtataaaatgaagtttatttggggcatgaga
ggcagtatgggaagaggggatggagagggacgaaagaagagagaagaaaa
agggagaaaccagccaggaaacattgtaaaagggtgtgggggtggggg
gaattccttgtttttaattgctgagtagtactccattgtgtaaatattcc
gcattttctgtatccattcatctgttgaaggacatctgggttctttccat
ctactggctattataaataaagctgctatgaacatagtggagttcatctt
tattctttgctagaatgcaggatatcttctagtactatgaccattagtct
gaagggctgaagacataatctaggtagcagctaaacttctccacgttcag
taagttgtataggtgctgtcttcatcaataggacattactgtcatttttt
gtttatttgtttttgatgcatagttctttacatagttctgacttttctgg
aactcactatgtagatcaggattgatttgaattcacagagatctacctcg
ttgtaccttgttaggctgagattaaagcatgtgtcattatgtacagccct
gcttatttttaactgtgaagggtaggttggggagagaatatttaaagtcc
tttcttatattcacaagcaaattcctattagctccactaattttctcttt
tcatgtgagcttagtagaagcagaggatgcttgccagcatctctcaggtt
ttagacaacattgatagaggaaggtgaatgatggactgggtggagatcat
tttttttacagaaaatgaagagaagtaaccaaagaggcattcagaaaaat
ctcaagaagagacatgtacagtagatacccaaagtggtaccaaatagtaa
ctgggcacagagaaaaaaaaaatcaccttccagaagatgctcattttaca
gaatattgagcatcatagtcttttgaaatggttcttcctccttttatttg
ttgtattgtggatggaaacaggccattgtacaggttagggaagtgtgact
atagaacctcttttgtagatagtacaaaccaggtttcttcctttgtttta
aaatatctctgtttgtaaaactcttggaaagttgtcaaagaaagagagtc
catgggtatatatgggtatgtgatggacctatagtacatttaccatggta
agatttgtgacattctccatgtagttgcaaaggtctgtcactgttttgca
tcctaatcatggcataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_18438256_18439262
seq2: B6Ng01-086C05.b_50_1047 (reverse)

seq1  CCCCCACCCCCACCCCCTTTT-CCATGTGTTCCTGGCTGGTCTCTTCCCT  49
      ||||||||||||| ||||||| | |||| |||||||||||| || |||||
seq2  CCCCCACCCCCACACCCTTTTACAATGT-TTCCTGGCTGGTTTC-TCCCT  48

seq1  TTTTTCTTTCTCTTCTTTCTTTCTGTCCCTCTCCATCCCCTTCTTTCCCA  99
      ||||  | |||||||||||     |||||||||||||||||   ||||||
seq2  TTTTCTTCTCTCTTCTTTC-----GTCCCTCTCCATCCCCT--CTTCCCA  91

seq1  TACCTGCCTCTCATGCCCCAAATAAACTTCATTTTATACTAGATCCAGTC  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-CTGCCTCTCATGCCCCAAATAAACTTCATTTTATACTAGATCCAGTC  140

seq1  ATATGGCTGGTGCTCAATGGGGATGTTTCAGCATCATGCCACCACATCAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCTGGTGCTCAATGGGGATGTTTCAGCATCATGCCACCACATCAC  190

seq1  AAAACATATCAAGATTAATCTGGTGCTCTTATTTCATTTTGTCTAAAGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATATCAAGATTAATCTGGTGCTCTTATTTCATTTTGTCTAAAGAT  240

seq1  AAAAATACTGAGTAGTGGGTTATTTTATTTGCTATAATTATAAGGGGAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACTGAGTAGTGGGTTATTTTATTTGCTATAATTATAAGGGGAAC  290

seq1  GTTCCTGAGTCTTAAAAGCAACAAACAAACAAACAAACAAACAAAAATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGAGTCTTAAAAGCAACAAACAAACAAACAAACAAACAAAAATAA  340

seq1  CAACAAAGAAAAAATACAAACGAAGATTCCAGAAGGAATTTATGTCTAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGAAAAAATACAAACGAAGATTCCAGAAGGAATTTATGTCTAGC  390

seq1  CCAAACTGAAAACCCTATTTTAATGCAATCATGGATTGAAAAGTAAACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGAAAACCCTATTTTAATGCAATCATGGATTGAAAAGTAAACTC  440

seq1  GAAAAGTCTAAAAACACATGGATATTTTTTTAAAGTAAGTAACCTATTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCTAAAAACACATGGATATTTTTTTAAAGTAAGTAACCTATTTA  490

seq1  TAAGAATCTTTTCAGGCATAAAAAGATCTTTTGCTCTTTTTTTCATAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATCTTTTCAGGCATAAAAAGATCTTTTGCTCTTTTTTTCATAATA  540

seq1  TTTTTTATACTACCAAAACAAATATTTTACATTAGCATAACTAAGATTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATACTACCAAAACAAATATTTTACATTAGCATAACTAAGATTCA  590

seq1  TTGTTCTCCTTATAAGGGAAATATACACGGTTCACAAGTTCAACTTTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCCTTATAAGGGAAATATACACGGTTCACAAGTTCAACTTTACA  640

seq1  ATACTGCAAAAGTAATAAACCTATATCCAGCACATACCAACTCTTTAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCAAAAGTAATAAACCTATATCCAGCACATACCAACTCTTTAGTT  690

seq1  TTTAATTTTACTCTGTCTCTAGGTTTCTTGTTTTATACTCTCTGAAGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTACTCTGTCTCTAGGTTTCTTGTTTTATACTCTCTGAAGGTG  740

seq1  CCAAGAATAAACCAAGTAGAATCTCTATATAAAGCCTCATGGACTAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAATAAACCAAGTAGAATCTCTATATAAAGCCTCATGGACTAAGAA  790

seq1  GTAAGAATTTTGACATTCATTATTTTTTTAAAGTTACTTATTCTATGTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATTTTGACATTCATTATTTTTTTAAAGTTACTTATTCTATGTAC  840

seq1  ATAAGCACACTGATGTATCAGACACACCAGAAGAGAGCATCAGATCTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACACTGATGTATCAGACACACCAGAAGAGAGCATCAGATCTCAT  890

seq1  TAAGATGGTTTTGAGTCACCATGTTGTTGTTAAGAATTAAACACTGGATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGTTTTGAGTCACCATGTTGTTGTTAAGAATTAAACACTGGATA  940

seq1  TCTGGAAGAGCATTCAGTGCTCTAACTGTGGAGCCATCTCTCCAGCTCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGAGCATTCAGTGCTCTAACTGTGGAGCCATCTCTCCAGCTCCT  990

seq1  TGGAATTC  1007
      ||||||||
seq2  TGGAATTC  998

seq1: chrX_18301827_18302977
seq2: B6Ng01-086C05.g_67_1184

seq1  GAATTCCTTGTTTTTAATTGCTGAGTAGTACTCCATTGTGTAAATATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTTTTTAATTGCTGAGTAGTACTCCATTGTGTAAATATTCC  50

seq1  GCATTTTCTGTATCCATTCATCTGTTGAAGGACATCTGGGTTCTTTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTGTATCCATTCATCTGTTGAAGGACATCTGGGTTCTTTCCAT  100

seq1  CTACTGGCTATTATAAATAAAGCTGCTATGAACATAGTGGAGTTCATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGCTATTATAAATAAAGCTGCTATGAACATAGTGGAGTTCATCTT  150

seq1  TATTCTTTGCTAGAATGCAGGATATCTTCTAGTACTATGACCATTAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTGCTAGAATGCAGGATATCTTCTAGTACTATGACCATTAGTCT  200

seq1  GAAGGGCTGAAGACATAATCTAGGTAGCAGCTAAACTTCTCCACGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTGAAGACATAATCTAGGTAGCAGCTAAACTTCTCCACGTTCAG  250

seq1  TAAGTTGTATAGGTGCTGTCTTCATCAATAGGACATTACTGTCATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTATAGGTGCTGTCTTCATCAATAGGACATTACTGTCATTTTTT  300

seq1  GTTTATTTGTTTTTGATGCATAGTTCTTTACATAGTTCTGACTTTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTGTTTTTGATGCATAGTTCTTTACATAGTTCTGACTTTTCTGG  350

seq1  AACTCACTATGTAGATCAGGATTGATTTGAATTCACAGAGATCTACCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTATGTAGATCAGGATTGATTTGAATTCACAGAGATCTACCTCG  400

seq1  TTGTACCTTGTTAGGCTGAGATTAAAGCATGTGTCATTATGTACAGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTTGTTAGGCTGAGATTAAAGCATGTGTCATTATGTACAGCCCT  450

seq1  GCTTATTTTTAACTGTGAAGGGTAGGTTGGGGAGAGAATATTTAAAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTTTAACTGTGAAGGGTAGGTTGGGGAGAGAATATTTAAAGTCC  500

seq1  TTTCTTATATTCACAAGCAAATTCCTATTAGCTCCACTAATTTTCTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATATTCACAAGCAAATTCCTATTAGCTCCACTAATTTTCTCTTT  550

seq1  TCATGTGAGCTTAGTAGAAGCAGAGGATGCTTGCCAGCATCTCTCAGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGAGCTTAGTAGAAGCAGAGGATGCTTGCCAGCATCTCTCAGGTT  600

seq1  TTAGACAACATTGATAGAGGAAGGTGAATGATGGACTGGGTGGAGATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAACATTGATAGAGGAAGGTGAATGATGGACTGGGTGGAGATCAT  650

seq1  TTTTTTTACAGAAAATGAAGAGAAGTAACCAAAGAGGCATTCAGAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTACAGAAAATGAAGAGAAGTAACCAAAGAGGCATTCAGAAAAAT  700

seq1  CTCAAGAAGAGACATGTACAGTAGATACCCAAAGTGGTACCAAATAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAGAGACATGTACAGTAGATACCCAAAGTGGTACCAAATAGTAA  750

seq1  CTGGGCACAGAGAAAAAAAAAATCACCTTCCAGAAGATGCTCATTTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCACAGAGAAAAAAAAAATCACCTTCCAGAAGATGCTCATTTTACA  800

seq1  GAATATTGAGCATCATAGTCTTTTGAAATGGTTCTTCCTCCTTTTATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTGAGCATCATAGTCTTTTGAAATGGTTCTTCCTCCTTTTATTTG  850

seq1  TTGTATTGTGGATGGAAAACAGGCCATTGTACAGGTTAGGGAAGTGTGAA  900
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  TTGTATTGTGGATGG-AAACAGGCCATTGTACAGGTTAGGGAAGTGTG-A  898

seq1  CTATAGAACCTCTTTTGTAGAATAGTACAAACCAGGTTTCTTCCTTTGTT  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTATAGAACCTCTTTTGTAG-ATAGTACAAACCAGGTTTCTTCCTTTGTT  947

seq1  TTTAAAAATATCTCTTGTTTTGTAAAAACTCTTTGGAAAGTTGTCAAAGG  1000
      ||  |||||||||||   ||||| ||||||| |||||||||||||||| |
seq2  TT--AAAATATCTCT--GTTTGT-AAAACTC-TTGGAAAGTTGTCAAA-G  990

seq1  AAAGAGAGTTCCAATGGGTATTATAATGGGTATGTTGATGGACACCTATA  1050
      |||||||||  | ||||||| ||| ||||||||| ||||||  |||||| 
seq2  AAAGAGAGT--CCATGGGTA-TAT-ATGGGTATG-TGATGG--ACCTAT-  1032

seq1  AGTACATTTACCCATTGTTAAGATTTTGTGACATTTTCTCATAGTTAGTT  1100
      ||||||||||||   || ||||| ||||||||||| || |||   |||||
seq2  AGTACATTTACC--ATGGTAAGA-TTTGTGACATTCTC-CAT--GTAGTT  1076

seq1  GCAAAGGTCATGTCACTTTTTTGTGCAAATACTTTAATATCATGGCATAA  1150
      ||||||||| ||||||| |||||     || ||     ||||||||||||
seq2  GCAAAGGTC-TGTCACTGTTTTG----CATCCT----AATCATGGCATAA  1117

seq1  A  1151
      |
seq2  A  1118