BAC Information

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BAC

Clone NameB6Ng01-086G13
ChromosomeX (Build37)
Map Location 63,407,816 - 63,409,066
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671840
Downstream geneSlitrk2, LOC666824, LOC627734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086G13.bB6Ng01-086G13.g
ACCDH899817DH899818
length1,1541,238
definitionDH899817|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G13, 5' end.DH899818|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcccctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atataaccagaagatgccccaactggtaagaaggacacatgctccactat
cttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcatagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtgtatattagccccaaacc
taggattcccaagatataagatacaatttcctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatgaaaggagttacagagacaaagtttgcagctgagatga
aaggatggaccatgtagagactgccatatccagggattcaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggccccggttgtagctgtttcttgtgagactatgccagggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcactgggctcccaa
tggagagctagggaaagaacccaaggagctaaagggatctgcaaccctat
aggtggaacaacattatgaactaaccagtactccggagctcttgactcta
gctgctatgtttcaaagatggcctagtcgcatcctgaaaaggccatgact
gcaactttatatgtccatacaggacgcaggcaaaggggaattggtggtat
ggat
gaattcatttgttggtttttctgaaatgcctgtattcttaccacaaatgg
tgaattactatgactttagcatttaaatattacttggttattttcatcag
tgttaagaaatgagatgaaaggatcagataaatgttcaaaattcattttt
ctgttcagggagtgggtttattatagaaaaggtgagaatattaaaatcca
gagggttattcatacattttgtgtgctattaaaaacatggttacaggcat
gatgtacttaaatgcaacaataataaaatgcactaaaataattagatatg
gtaaattactcactttgacataatttattttatgtagaatattactttaa
ttttcattgcttttctgtttaattcataccttgcagaattgggctggaga
gaaggcccagtcagtaaagtgcttgacttaaaagcatgacaacctaagtt
atgtgcctagaacccatttctaaaaacaagtagctctgtgtggtgatgtt
cacgtctaatcctaacactgggtaggtagagagaattttgtgatcactgg
agcttgctagccacacaacatatttactgtgtctcaaaggattcatgtct
agattgtatggaccaataagaaaagaaaattcaatgaatccaaaatagaa
gggcaaacaagagaagttggatttttcctggggggaaaagtatgtgaaat
tgatctctgggtaagcacacacacacacacacacacacacacacacacac
acacacacacacatgtatacacacaagagtgcatgtgcacacacttttct
cacacatatatgcatgtactttacttaaaaagtagtgtaagcacattatc
ttcatatttgcacaagcaaagatatgcatgaatgcaaacatataaatact
taaaacatagagttgatttcctcatgctaatggaagttatctctataaaa
aatgtatctgaaaatcggaagaaatgcttgagacatgctcatagatgtgg
ctttccattgggatctaacaggaaatggatttaataattaactatttgaa
gattctgtggtcctcttttttagtggaagactctgaaggttatttcaaaa
tctggaaatacaaaatgaatttatccacataaccattcacatgcagaatc
ctatcagctgaaaacactggttgaagtccatccgaaattaatcctttgcg
ttaaactccgtggtttaactttctgcatggggagaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_63407816_63409066
seq2: B6Ng01-086G13.g_67_1304 (reverse)

seq1  CGTTCT-CCCATGCAAGAAAGTTAAACACAGAAGTTTAACAGCAAA-GAT  48
      |||||| ||||||| ||||||||||||   | |||||||| ||||| |||
seq2  CGTTCTCCCCATGC-AGAAAGTTAAACCACGGAGTTTAAC-GCAAAGGAT  48

seq1  TAAAATTTCGAATGGACTCTTAACCAGTTGTTTTCAGCTGTAATGGATTT  98
      |  ||||||| ||||||| | |||||| ||||||||||||  || |  ||
seq2  T--AATTTCGGATGGACT-TCAACCAG-TGTTTTCAGCTG--ATAGGATT  92

seq1  CTGCATGTTGAATGGTTAATGTGTAT-AATTCATATTTGTTATTTCCAGT  147
      ||||||| ||||||||| ||||| || ||||||| |||| ||||||||| 
seq2  CTGCATG-TGAATGGTT-ATGTGGATAAATTCAT-TTTG-TATTTCCAGA  138

seq1  ATTTGAAATAACTTTCAGAGTTCTTCAACTTAAAAAGAGGA-CACAGAAT  196
       ||||||||||| ||||||| ||||| ||| |||||||||| ||||||||
seq2  TTTTGAAATAACCTTCAGAG-TCTTCCACTAAAAAAGAGGACCACAGAAT  187

seq1  CTTCAAATAGTTAATTATTTAATTCCATTTTCCTGGTTAGAT-CCAATGG  245
      ||||||||||||||||| |||| |||| |||||| ||||||| |||||||
seq2  CTTCAAATAGTTAATTA-TTAAATCCA-TTTCCT-GTTAGATCCCAATGG  234

seq1  AAAGCCACATCTATGAGCATGTCTCAAGCATTTCTTCCGATTTTCAGATA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACATCTATGAGCATGTCTCAAGCATTTCTTCCGATTTTCAGATA  284

seq1  CATTTTTTTATTAGAGATAACTTCCATTAGCATGAGGAAATCAACTCTTA  345
      ||||||||   |||||||||||||||||||||||||||||||||||| ||
seq2  CATTTTTT--ATAGAGATAACTTCCATTAGCATGAGGAAATCAACTC-TA  331

seq1  TGTTTTAAGTATTTATATGTTTGCATTCATGCATATCTTTGCTTGTGCAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAGTATTTATATGTTTGCATTCATGCATATCTTTGCTTGTGCAA  381

seq1  ATATGAAGATAATGTGCTTACACTACTTTTTAAGT-AAGTACATGCATAT  444
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATATGAAGATAATGTGCTTACACTACTTTTTAAGTAAAGTACATGCATAT  431

seq1  ATGTGTGAGAAAAGTGTGTGCACATGCACTCTTGTGTGTATACATGTGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGAGAAAAGTGTGTGCACATGCACTCTTGTGTGTATACATGTGTG  481

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTACCCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTACCCA  531

seq1  GAGATCAATTTCACATACTTTTCCCCCCAGGAAAAATCCAACTTCTCTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAATTTCACATACTTTTCCCCCCAGGAAAAATCCAACTTCTCTTG  581

seq1  TTTGCCCTTCTATTTTGGATTCATTGAATTTTCTTTTCTTATTGGTCCAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCTTCTATTTTGGATTCATTGAATTTTCTTTTCTTATTGGTCCAT  631

seq1  ACAATCTAGACATGAATCCTTTGAGACACAGTAAATATGTTGTGTGGCTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTAGACATGAATCCTTTGAGACACAGTAAATATGTTGTGTGGCTA  681

seq1  GCAAGCTCCAGTGATCACAAAATTCTCTCTACCTACCCAGTGTTAGGATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTCCAGTGATCACAAAATTCTCTCTACCTACCCAGTGTTAGGATT  731

seq1  AGACGTGAACATCACCACACAGAGCTACTTGTTTTTAGAAATGGGTTCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTGAACATCACCACACAGAGCTACTTGTTTTTAGAAATGGGTTCTA  781

seq1  GGCACATAACTTAGGTTGTCATGCTTTTAAGTCAAGCACTTTACTGACTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATAACTTAGGTTGTCATGCTTTTAAGTCAAGCACTTTACTGACTG  831

seq1  GGCCTTCTCTCCAGCCCAATTCTGCAAGGTATGAATTAAACAGAAAAGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCTCTCCAGCCCAATTCTGCAAGGTATGAATTAAACAGAAAAGCA  881

seq1  ATGAAAATTAAAGTAATATTCTACATAAAATAAATTATGTCAAAGTGAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATTAAAGTAATATTCTACATAAAATAAATTATGTCAAAGTGAGT  931

seq1  AATTTACCATATCTAATTATTTTAGTGCATTTTATTATTGTTGCATTTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCATATCTAATTATTTTAGTGCATTTTATTATTGTTGCATTTAA  981

seq1  GTACATCATGCCTGTAACCATGTTTTTAATAGCACACAAAATGTATGAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCATGCCTGTAACCATGTTTTTAATAGCACACAAAATGTATGAAT  1031

seq1  AACCCTCTGGATTTTAATATTCTCACCTTTTCTATAATAAACCCACTCCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTGGATTTTAATATTCTCACCTTTTCTATAATAAACCCACTCCC  1081

seq1  TGAACAGAAAAATGAATTTTGAACATTTATCTGATCCTTTCATCTCATTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAAAAATGAATTTTGAACATTTATCTGATCCTTTCATCTCATTT  1131

seq1  CTTAACACTGATGAAAATAACCAAGTAATATTTAAATGCTAAAGTCATAG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACACTGATGAAAATAACCAAGTAATATTTAAATGCTAAAGTCATAG  1181

seq1  TAATTCACCATTTGTGGTAAGAATACAGGCATTTCAGAAAAACCAACAAA  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCACCATTTGTGGTAAGAATACAGGCATTTCAGAAAAACCAACAAA  1231

seq1  TGAATTC  1251
      |||||||
seq2  TGAATTC  1238