BAC Information

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BAC

Clone NameB6Ng01-086H04
ChromosomeX (Build37)19 (Build37)
Map Location 11,808,564 - 11,808,91015,794,509 - 15,795,326
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663, 8430439B09Rik, LOC669520, Rpl23a-ps, LOC100043945, Bcor, 2900008C10Rik, LOC385323
Downstream geneLOC100043946, LOC628441, Atp6ap2, LOC668986, EG245347, 1810030O07Rik, Crsp2, LOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086H04.bB6Ng01-086H04.g
ACCDH899844DH899845
length1,065913
definitionDH899844|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H04, 5' end.DH899845|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,808,564 - 11,808,910)(15,794,509 - 15,795,326)
sequence
gaattcctcaggcaaggtcagagaaggacaaaccctgggacaaacaaaag
gaatctcatatattgctccgagcccagagactgtcaggtcatggcagact
ttgactttaattattagagttttctcacaatgcatgctgtgatcccagca
cgtgggaggtggaggcaaaaagatggttggaagccagcctgggctagata
gcaagaccctatttccaaacttcaaaacaacaatcacaaatttgttcagg
gcccaactcctgaagtatggttattggcaccgaactctggcagtgtagta
ttggaaatacagattccccaagccctactttagaagggttgaagtgtcat
actttaaaaacaaggccccttgaacttgtggttatagttcagctggcaaa
ttcctggcctagcatacatgaagccttgggcttaatggcaagtactacat
aaaactaggcataggggtctatgtctttaatcctaacactgaggaagtgg
aggtaggaaggtgaggagtttgaggctagcctgatctacatgagagtgtc
aaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaaac
caacccaagatcattgggagttaggtcaaaattgttggctgagatatagg
acattagactacgcctcccttaaaggggaagattgtggagtgttattaga
cgcgttttcacgaccggccaggaagaacaccacagaccagaatcttctgc
ggcaaagctttatttcttacatcttcaggagccagggtgcaggaagcaag
agagcaagaagcaagagagcaagaagcaagagagcaagaagcaagagagc
aagaagcaagagagcaagaagcaagagagagagagaaacgaaaccccgtc
cctcttaaggagcattctccttcgcctcggacgtgtcactccctgattgg
ctgcagcccatcggccgagttgacgtcacggggaagcagagcacaagtag
tcataagatacccttggcacatgcgcagattatttgtttaccacttagaa
cacagctgtcagcgc
gaattcaagtattcagacatcaattaagacaatcagaaaatacaaagaga
ctgtgtgagttctttggaacactactcagacacaaaccttatgaaccata
gggtgagaatgagaagaatgttaatataaaggcatactgaatatattcaa
taggcgcttggcaaatagcttagcaggaaaaggcatttgccacgcaagct
ggacaaccagagttcaatccacagaatgcagtagaaggaaaaatagattc
tagaaggatgtctgtagacttccttgactccacacacaccatggcatgta
actgtccccattaccatgtaacagagagagagacagagacagagacacag
acagagacagacacacagagacagagagagacagagactcagacagagac
tgagacagagagaattttcctaaacagaactccaatggctcatgctctaa
gatcaagaattgataatgggacctcataaaagtgaaaattttctgtaagg
caaaggacattgtcaataggacaaatctgcaacctatagactggaaaaaa
atcttcatctgatatagggctaatatccaaaatatataaagaactcaaga
agctcaccaccaaaaaacaaacaacccaatcaaaaaatggggtatagaac
taaacagagagttcacaacagagaaatctctaatgactgagaagcactta
aagaactgttcaaagtccttagtgatcagggaaatgcaaaccaagacaac
tctgagattctgtcttacaccaatcagaatggctaagatcaaaaccttaa
gtgacagcacatgttggcaaggatatggagaaagagtaacactcttgtgt
tgctggtgggattgcaaactggtacaaccactctggaaatcaatctggag
attcctcagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_11808564_11808910
seq2: B6Ng01-086H04.b_734_1108 (reverse)

seq1  GCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCC  50

seq1  AAGGGTATCTTATGACTACTTGTGCTCTGCCTTCCCCGTGACGTCAACTT  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  AAGGGTATCTTATGACTACTTGTGCTCTG-CTTCCCCGTGACGTCAACTC  99

seq1  GGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCGAGGCGAAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCGAGGCGAAGGAG  149

seq1  AATGCTCCTTAAGAGGGACGGGGTTTCGTTT-TCTCTCTCTCTTGCTTCT  199
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATGCTCCTTAAGAGGGACGGGGTTTCGTTTCTCTCTCTCTCTTGCTTCT  199

seq1  TGCGCTCTTGCTTCTTGCTCTCTTGCTTCTCGCT----------------  233
      ||| |||||||||||||||||||||||||| |||                
seq2  TGCTCTCTTGCTTCTTGCTCTCTTGCTTCTTGCTCTCTTGCTTCTTGCTC  249

seq1  ------------CGCTCTTGCTTCTTGCACTCTGGCTCCTGAAGATGTAA  271
                  | |||||||||| ||||| |||||||||||||||||||
seq2  TCTTGCTTCTTGCTCTCTTGCTTCCTGCACCCTGGCTCCTGAAGATGTAA  299

seq1  GCAATAAAGCTTTGCCGCAGAAGATTCTGGTCTGTGGTGTTCTTCCTGGC  321
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGCTTTGCCGCAGAAGATTCTGGTCTGTGGTGTTCTTCCTGGC  349

seq1  CGGTCGTGAGAACGCGTCTAATAACA  347
      ||||||||| ||||||||||||||||
seq2  CGGTCGTGAAAACGCGTCTAATAACA  375

seq1: chr19_15794509_15795326
seq2: B6Ng01-086H04.g_67_884

seq1  GAATTCAAGTATTCAGACATCAATTAAGACAATCAGAAAATACAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTATTCAGACATCAATTAAGACAATCAGAAAATACAAAGAGA  50

seq1  CTGTGTGAGTTCTTTGGAACACTACTCAGACACAAACCTTATGAACCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGAGTTCTTTGGAACACTACTCAGACACAAACCTTATGAACCATA  100

seq1  GGGTGAGAATGAGAAGAATGTTAATATAAAGGCATACTGAATATATTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGAATGAGAAGAATGTTAATATAAAGGCATACTGAATATATTCAA  150

seq1  TAGGCGCTTGGCAAATAGCTTAGCAGGAAAAGGCATTTGCCACGCAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGCTTGGCAAATAGCTTAGCAGGAAAAGGCATTTGCCACGCAAGCT  200

seq1  GGACAACCAGAGTTCAATCCACAGAATGCAGTAGAAGGAAAAATAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACCAGAGTTCAATCCACAGAATGCAGTAGAAGGAAAAATAGATTC  250

seq1  TAGAAGGATGTCTGTAGACTTCCTTGACTCCACACACACCATGGCATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGATGTCTGTAGACTTCCTTGACTCCACACACACCATGGCATGTA  300

seq1  ACTGTCCCCATTACCATGTAACAGAGAGAGAGACAGAGACAGAGACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCCATTACCATGTAACAGAGAGAGAGACAGAGACAGAGACACAG  350

seq1  ACAGAGACAGACACACAGAGACAGAGAGAGACAGAGACTCAGACAGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACAGACACACAGAGACAGAGAGAGACAGAGACTCAGACAGAGAC  400

seq1  TGAGACAGAGAGAATTTTCCTAAACAGAACTCCAATGGCTCATGCTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGAGAGAATTTTCCTAAACAGAACTCCAATGGCTCATGCTCTAA  450

seq1  GATCAAGAATTGATAATGGGACCTCATAAAAGTGAAAATTTTCTGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGAATTGATAATGGGACCTCATAAAAGTGAAAATTTTCTGTAAGG  500

seq1  CAAAGGACATTGTCAATAGGACAAATCTGCAACCTATAGACTGGAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGACATTGTCAATAGGACAAATCTGCAACCTATAGACTGGAAAAAA  550

seq1  ATCTTCATCTGATATAGGGCTAATATCCAAAATATATAAAGAACTCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATCTGATATAGGGCTAATATCCAAAATATATAAAGAACTCAAGA  600

seq1  AGCTCACCACCAAAAAACAAACAACCCAATCAAAAAATGGGGTATAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCACCAAAAAACAAACAACCCAATCAAAAAATGGGGTATAGAAC  650

seq1  TAAACAGAGAGTTCACAACAGAGAAATCTCTAATGACTGAGAAGCACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAGAGTTCACAACAGAGAAATCTCTAATGACTGAGAAGCACTTA  700

seq1  AAGAACTGTTCAAAGTCCTTAGTGATCAGGGAAATGCAAACCAAGACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGTTCAAAGTCCTTAGTGATCAGGGAAATGCAAACCAAGACAAC  750

seq1  TCTGAGATTCTGTCTTACACCAATCAGAATGGCTAAGATCAAAACCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATTCTGTCTTACACCAATCAGAATGGCTAAGATCAAAACCTTAA  800

seq1  GTGACAGCACATGTTGGC  818
      ||||||||||||||||||
seq2  GTGACAGCACATGTTGGC  818