BAC Information

Click to search

BAC

Clone NameB6Ng01-086J01
ChromosomeX (Build37)
Map Location 60,591,301 - 60,759,447
singlet/doubletdoublet
Overlap genenone
Upstream gene4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695, EG627420
Downstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086J01.bB6Ng01-086J01.g
ACCDH899925DH899926
length8141,070
definitionDH899925|Mus musculus domesticus DNA, BAC clone: B6Ng01-086J01, 5' end.DH899926|Mus musculus domesticus DNA, BAC clone: B6Ng01-086J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,758,634 - 60,759,447)(60,591,301 - 60,592,351)
sequence
gaattccagtgcataacgtgaactgagatgattttacaagcaagaaaatt
ccagataaaactgaagtctgtgctgtgctttgttgtgctccacagatttc
tgtcatcaaagaaagatatgctttatattttgagcaacactcttgattta
ttttcagtgtatgacaggattttgctcctctgttagccctgataatacca
ccccattttgtattttccttaagctttgttactcgaataaagttttcaga
taaatagattattgatgaagacatctcactaaatgtattcacagaatgtg
cccataaaatctagcacatagtatttcatgtatgtttatatcagtggaag
agaaaccatacacaggaaatcataaatatattaagaaaggtgcttcatta
gtacacaaaatgtttattctcatgaaaaaatctcatactcaaaaaagcta
tagagtgctttcagaacctcaataaaattaattcattttcatagaagatc
acactgtaaagagagtatagcttagaatccacatgaaaacaccaaaaaga
taccccaacttctgtgttcattgaaatatcattcatagtaccatgtatat
ggaccagcctaaatgactattgataaatcagaaaggtgttattacatatg
tgtactgctagttagcaaaatgaataatggaattaggataatttcaggaa
aatagagctggagaaaaagatgttagccatataagcacaaatcaaatgtc
atgtatttgtttctcatatgcaatctagattgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtg
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacattcctccattgttggtg
ggattgcaagcttgtacaaccagtctggaaatcagtctggcagttcctca
gaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagatggacacatgctccactat
gttcatagcagccttatttataatagccaaaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggtatagttttttttttaattttgtgatatactc
tacatattcctaaacttcccagaactttattaaaagtagatttttcctca
cataatatatcctgataacagttgccccttccttttctccttcaacctca
cccccttaccatccatattcactacatctctgtatcttgctagaaaacaa
agatgggaaaaaataaattaaaaaataaaaattaacagattgtaattgga
aaaaccaaacaaacaaacagaaaagaaagaaaagagttcaagagaatata
caaaaaacaggcacattcatttgcacattcagagatcccataaaaacaaa
acactaaactggaagccacaatatatataggaacgacttgatgcagatcc
tgtgcagaagctgtccttaatttaaataagatattcttacttgatttgtg
caagcattgcatgagcatcacttgcacaatgaaatcattgaaattaagtg
tttatttctgggctggtgggagttcccttttggtacttacaaaatatatt
cttgtacttaaagacactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_60758634_60759447
seq2: B6Ng01-086J01.b_42_855 (reverse)

seq1  CACACACACACACACACACACACACACACACACAATCTAGATTGCATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAATCTAGATTGCATATG  50

seq1  AGAAACAAATACATGACATTTGATTTGTGCTTATATGGCTAACATCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAATACATGACATTTGATTTGTGCTTATATGGCTAACATCTTTT  100

seq1  TCTCCAGCTCTATTTTCCTGAAATTATCCTAATTCCATTATTCATTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCTCTATTTTCCTGAAATTATCCTAATTCCATTATTCATTTTGC  150

seq1  TAACTAGCAGTACACATATGTAATAACACCTTTCTGATTTATCAATAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGCAGTACACATATGTAATAACACCTTTCTGATTTATCAATAGTC  200

seq1  ATTTAGGCTGGTCCATATACATGGTACTATGAATGATATTTCAATGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGCTGGTCCATATACATGGTACTATGAATGATATTTCAATGAACA  250

seq1  CAGAAGTTGGGGTATCTTTTTGGTGTTTTCATGTGGATTCTAAGCTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTGGGGTATCTTTTTGGTGTTTTCATGTGGATTCTAAGCTATAC  300

seq1  TCTCTTTACAGTGTGATCTTCTATGAAAATGAATTAATTTTATTGAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTACAGTGTGATCTTCTATGAAAATGAATTAATTTTATTGAGGTT  350

seq1  CTGAAAGCACTCTATAGCTTTTTTGAGTATGAGATTTTTTCATGAGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCACTCTATAGCTTTTTTGAGTATGAGATTTTTTCATGAGAATA  400

seq1  AACATTTTGTGTACTAATGAAGCACCTTTCTTAATATATTTATGATTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTGTGTACTAATGAAGCACCTTTCTTAATATATTTATGATTTCC  450

seq1  TGTGTATGGTTTCTCTTCCACTGATATAAACATACATGAAATACTATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGGTTTCTCTTCCACTGATATAAACATACATGAAATACTATGTG  500

seq1  CTAGATTTTATGGGCACATTCTGTGAATACATTTAGTGAGATGTCTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTTATGGGCACATTCTGTGAATACATTTAGTGAGATGTCTTCAT  550

seq1  CAATAATCTATTTATCTGAAAACTTTATTCGAGTAACAAAGCTTAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATCTATTTATCTGAAAACTTTATTCGAGTAACAAAGCTTAAGGAA  600

seq1  AATACAAAATGGGGTGGTATTATCAGGGCTAACAGAGGAGCAAAATCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAATGGGGTGGTATTATCAGGGCTAACAGAGGAGCAAAATCCTG  650

seq1  TCATACACTGAAAATAAATCAAGAGTGTTGCTCAAAATATAAAGCATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACACTGAAAATAAATCAAGAGTGTTGCTCAAAATATAAAGCATATC  700

seq1  TTTCTTTGATGACAGAAATCTGTGGAGCACAACAAAGCACAGCACAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGATGACAGAAATCTGTGGAGCACAACAAAGCACAGCACAGACT  750

seq1  TCAGTTTTATCTGGAATTTTCTTGCTTGTAAAATCATCTCAGTTCACGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTATCTGGAATTTTCTTGCTTGTAAAATCATCTCAGTTCACGTT  800

seq1  ATGCACTGGAATTC  814
      ||||||||||||||
seq2  ATGCACTGGAATTC  814

seq1: chrX_60591301_60592351
seq2: B6Ng01-086J01.g_87_1135

seq1  CGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAG  50

seq1  AGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAA  100

seq1  TGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGA  150

seq1  GAAAGAGGAACATTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGAACATTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACC  200

seq1  AGTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTAC  250

seq1  TGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCA  300

seq1  ACCGGTAAGATGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTAAGATGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT  350

seq1  AATAGCCAAAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCAAAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGA  400

seq1  TACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAA  450

seq1  AAGAATGAATTTATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAATTTATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGTAT  500

seq1  AGTTTTTTTTTTAATTTTGTGATATACTCTACATATTCCTAAACTTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTTTTTAATTTTGTGATATACTCTACATATTCCTAAACTTCCCA  550

seq1  GAACTTTATTAAAAGTAGATTTTTCCTCACATAATATATCCTGATAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTATTAAAAGTAGATTTTTCCTCACATAATATATCCTGATAACAG  600

seq1  TTGCCCCTTCCTTTTCTCCTTCAACCTCACCCCCTTACCATCCATATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCTTCCTTTTCTCCTTCAACCTCACCCCCTTACCATCCATATTCA  650

seq1  CTACATCTCTGTATCTTGCTAGAAAACAAAGATGGGAAAAAATAAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTCTGTATCTTGCTAGAAAACAAAGATGGGAAAAAATAAATTAA  700

seq1  AAAATAAAAATTAACAGATTGTAATTGGAAAAACCAAACAAACAAACAG-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAATAAAAATTAACAGATTGTAATTGGAAAAACCAAACAAACAAACAGA  750

seq1  AAAGAAAGAAAAGAGTTCAAGAGAATATACAAAAAACAGGCACATTCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAAGAGTTCAAGAGAATATACAAAAAACAGGCACATTCATT  800

seq1  TGCACATTCAGAGATCCCATAAAAACAAAACACTAAACTGGAAGCCACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTCAGAGATCCCATAAAAACAAAACACTAAACTGGAAGCCACAA  850

seq1  TATATATAGGAACGACTTGATGCAGAT-CTGTGCAGAAGCTGTCCTTAAT  898
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATATATAGGAACGACTTGATGCAGATCCTGTGCAGAAGCTGTCCTTAAT  900

seq1  TTAAATAAGATATTCTTACTTGATTTGTGCAAGCATTGCATGAGCATCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAGATATTCTTACTTGATTTGTGCAAGCATTGCATGAGCATCAC  950

seq1  TTGCAACAATGAAATCATTGAAATTTAAAGTGTTTATTTCTGGGCTGGTG  998
      |||| ||||||||||||||||||||  |||||||||||||||||||||||
seq2  TTGC-ACAATGAAATCATTGAAATT--AAGTGTTTATTTCTGGGCTGGTG  997

seq1  GGAGTTTCCCTTTTGGTACCTTACAAAATATATTCTTGTAC-TAAAGACA  1047
      |||| ||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GGAG-TTCCCTTTTGGTA-CTTACAAAATATATTCTTGTACTTAAAGACA  1045

seq1  CTAG  1051
      ||||
seq2  CTAG  1049