BAC Information

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BAC

Clone NameB6Ng01-090C07
ChromosomeX (Build37)
Map Location 86,865,749 - 86,990,376
singlet/doubletdoublet
Overlap genenone
Upstream geneEG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934, Pet2, EG629419
Downstream gene4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615, LOC629471
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090C07.bB6Ng01-090C07.g
ACCDH902524DH902525
length1,1481,116
definitionDH902524|Mus musculus domesticus DNA, BAC clone: B6Ng01-090C07, 5' end.DH902525|Mus musculus domesticus DNA, BAC clone: B6Ng01-090C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,989,187 - 86,990,376)(86,865,749 - 86,866,886)
sequence
gaattctctcatattgagtggacctcaaattcaattagactgttgatgtt
tatctacaacataaaagaactactatttcactttcaaatatagtttgcca
tactggcctttcttattgttcataggttttacagcaaagtaggactattg
actgcttctgtaattaattattctttaattctgcccctgttggtagctca
atcccttcaaaggcaaagaaggaactacacagcactattcttctctatat
ggatttattctaagacaataatcacccatataatggtatgaatgagcatg
aatccatctgaaaggtaactcattgttattttggaagcgttacagtatag
aaagaatcaaacttcctttcctttcattaaaatgttaagttagtatctga
ttttaataaccagtcctgttttttcaagttcttttctaaatttttttcaa
ctttatgataataaaatgttagaaagatatatgctagggctagacagatg
gtttagtggttaagaacactggctgctcttccagaggacctgagttcaat
ttctagcacccacatagcagctcacaactacctgtacctccagtaccagg
gtttggacacccaaacacaataataatgaaagcaaaaaactaatgcacat
aaaataaaaattaaaaagaaagaaaaacctatgctaatttatgttgtaag
taaatattatgaccttagatttcatacttgttataagttgtacaggatac
cattctttttggcttcagtctataggggtcctaaaactagcttaaatata
tttccttatatcacttcttattctgtgcagccatctttcctttaaaaaaa
aaaaaaaaacccattaaaaaatggggctcagagttaaacaaagaattccc
ctctgaggaatccaagatggcttataagcactttaaaatgttcacatcct
taatctatcagggaatgcaaatcaaacaccttgagattacacctcataca
gtcagatgcctaagatcaaattcagtgactgcagatctgcaagatgggag
aaaagaaatactcatgtggtgatgcagcttttacatccctctgaatcgct
gcagttcctgaaattggctgatactgaaggatccaatacctctcctgg
gaattctttgagaagtgccttgcttgtccaagaacacctatgttagacgg
gttctcgtgctggagaaagtcatagtccacatgcttttggcatgtaaaat
gctagggcttgggagtcctgaaggcatcaagtgagatgtcaaaggaaagc
caggaggacaacttgaaagtaactactgacaagaaaatgcttggggctat
gcgagtgaatccaaagtcacaaatggaacactagaaaggtaaaaacacca
ggaaaccattgaaagaaggcatagatagcatgttaaatcagtccaagaca
gtggccatgtgggtttcaaccagcaaaggctatctatagtagtataattg
attcaatttgtaatatcttccaatggtatcttgttgcagtaaaggaatgc
aaataacacaagtagaacttaacagtgaccaaccacttttaggatatata
taatttttgagaccgttcaagtgtacatactagagttattgcataataaa
ttgcatattctttacttcttagcttcccaaatctctacttacttgtatta
tacttactacttatttgtattataaggctaaatgagttttacttcttctc
agcacttactaattttaatgtgacccttgttactgtctaattagtagtta
ttcaattcctacctccatttctacactttggctgttaaaaaccagtgcta
ctttcaaatatcttttttagacttttgcactattaaaatgtgtgtatgcc
aagaggtcatggtttgttaataatacaccatgtttgtgcaaaataaaaaa
caaacaagctgcatatattctccttgatggataagaatagttcaggaaaa
tctgagtccccaagccaggtgcagccaccagccaccattactccagcagg
actatggagcataaataaattttatgactcagtccagctaattttattat
atatttagggaggaatgtagcctccctcagctgaagcagctgatcagact
tgacttgctgcactagaggagatacttagtaagagctttctgacttgatg
gcttattgctctcgttcaaactctgctttcctctgagttcttgaacggtc
tgggaacacaccctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_86989187_86990376
seq2: B6Ng01-090C07.b_45_1192 (reverse)

seq1  CCAGGAGAGGTATTGTGGGATCCTCCGGTAGTACTATGTCCAATTTTCTG  50
      ||||||||||||||   ||||||| | |||  |      ||||||   | 
seq2  CCAGGAGAGGTATT---GGATCCTTCAGTATCA-----GCCAATT---TC  39

seq1  AGGAACTGCCAGACTGATTTCCAGAGTGGTTGTAAAAGCTTGCAATCCCA  100
      |||||||||   |  ||||  ||||| || ||||||||| ||||   |||
seq2  AGGAACTGC---AGCGATT--CAGAG-GGATGTAAAAGC-TGCATCACCA  82

seq1  CCAACAATGGAGGAATGTTCCTCTTTCTCCACATCCTTGCCAGAATCTGC  150
      |         | || | || || ||||||| ||| |||| ||| ||||||
seq2  C---------ATGAGTATTTCT-TTTCTCC-CAT-CTTG-CAG-ATCTGC  118

seq1  TGTCACCTGAATTTTTGATCTTAGGCATTCTGACTGGTATGAGGTGTAAT  200
       |||| |||||  |||||||||||||| ||||||| ||||||||||||||
seq2  AGTCA-CTGAA--TTTGATCTTAGGCA-TCTGACT-GTATGAGGTGTAAT  163

seq1  CTCAAGGTTGTTTTGATTTGCATTTCCCTGAT-GATTAAGGATGTTGAAC  249
      ||||||||   ||||||||||| ||||||||| ||||||||||| |||||
seq2  CTCAAGGT--GTTTGATTTGCA-TTCCCTGATAGATTAAGGATG-TGAAC  209

seq1  ATTTTTTCAGGTGCTTCTCAGCCATTCTGGATTCCTCAGGTGAGAATTCT  299
      |  |||| | |||||| | ||||||  ||||||||||||  | |||||||
seq2  A--TTTTAAAGTGCTTATAAGCCATCTTGGATTCCTCAGAGGGGAATTCT  257

seq1  TTGTTTAGCTCTGAGCCCCATTTTTTAATGGGTTTTTTTTTTTTTTGTAA  349
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  TTGTTTAACTCTGAGCCCCATTTTTTAATGGGTTTTTTTTTTTTTTTTAA  307

seq1  GAGAAAGATGGCTGCACAGAATAAGAAGTGATATAAGGAAATATATTTAA  399
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATGGCTGCACAGAATAAGAAGTGATATAAGGAAATATATTTAA  357

seq1  GCTAGTTTTAGGACCCCTATAGACTGAAGCCAAAAAGAATGGTATCCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTTAGGACCCCTATAGACTGAAGCCAAAAAGAATGGTATCCTGT  407

seq1  ACAACTTATAACAAGTATGAAATCTAAGGTCATAATATTTACTTACAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTATAACAAGTATGAAATCTAAGGTCATAATATTTACTTACAACA  457

seq1  TAAATTAGCATAGGTTTTTCTTTCTTTTTAATTTTTATTTTATGTGCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAGCATAGGTTTTTCTTTCTTTTTAATTTTTATTTTATGTGCATT  507

seq1  AGTTTTTTGCTTTCATTATTATTGTGTTTGGGTGTCCAAACCCTGGTACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTGCTTTCATTATTATTGTGTTTGGGTGTCCAAACCCTGGTACT  557

seq1  GGAGGTACAGGTAGTTGTGAGCTGCTATGTGGGTGCTAGAAATTGAACTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTACAGGTAGTTGTGAGCTGCTATGTGGGTGCTAGAAATTGAACTC  607

seq1  AGGTCCTCTGGAAGAGCAGCCAGTGTTCTTAACCACTAAACCATCTGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCTGGAAGAGCAGCCAGTGTTCTTAACCACTAAACCATCTGTCT  657

seq1  AGCCCTAGCATATATCTTTCTAACATTTTATTATCATAAAGTTGAAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAGCATATATCTTTCTAACATTTTATTATCATAAAGTTGAAAAAA  707

seq1  ATTTAGAAAAGAACTTGAAAAAACAGGACTGGTTATTAAAATCAGATACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAAAGAACTTGAAAAAACAGGACTGGTTATTAAAATCAGATACT  757

seq1  AACTTAACATTTTAATGAAAGGAAAGGAAGTTTGATTCTTTCTATACTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACATTTTAATGAAAGGAAAGGAAGTTTGATTCTTTCTATACTGT  807

seq1  AACGCTTCCAAAATAACAATGAGTTACCTTTCAGATGGATTCATGCTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTTCCAAAATAACAATGAGTTACCTTTCAGATGGATTCATGCTCAT  857

seq1  TCATACCATTATATGGGTGATTATTGTCTTAGAATAAATCCATATAGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCATTATATGGGTGATTATTGTCTTAGAATAAATCCATATAGAGA  907

seq1  AGAATAGTGCTGTGTAGTTCCTTCTTTGCCTTTGAAGGGATTGAGCTACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTGCTGTGTAGTTCCTTCTTTGCCTTTGAAGGGATTGAGCTACC  957

seq1  AACAGGGGCAGAATTAAAGAATAATTAATTACAGAAGCAGTCAATAGTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGGCAGAATTAAAGAATAATTAATTACAGAAGCAGTCAATAGTCC  1007

seq1  TACTTTGCTGTAAAACCTATGAACAATAAGAAAGGCCAGTATGGCAAACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGCTGTAAAACCTATGAACAATAAGAAAGGCCAGTATGGCAAACT  1057

seq1  ATATTTGAAAGTGAAATAGTAGTTCTTTTATGTTGTAGATAAACATCAAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAAAGTGAAATAGTAGTTCTTTTATGTTGTAGATAAACATCAAC  1107

seq1  AGTCTAATTGAATTTGAGGTCCACTCAATATGAGAGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATTGAATTTGAGGTCCACTCAATATGAGAGAATTC  1148

seq1: chrX_86865749_86866886
seq2: B6Ng01-090C07.g_69_1184

seq1  GAATTCTTTGAGAAGTGCCTTGCTTGTCCAAGAACACCTATGTTAGACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGAAGTGCCTTGCTTGTCCAAGAACACCTATGTTAGACGG  50

seq1  GTTCTCGTGCTGGAGAAAGTCATAGTCCACATGCTTTTGGCATGTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCGTGCTGGAGAAAGTCATAGTCCACATGCTTTTGGCATGTAAAAT  100

seq1  GCTAGGGCTTGGGAGTCCTGAAGGCATCAAGTGAGATGTCAAAGGAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGCTTGGGAGTCCTGAAGGCATCAAGTGAGATGTCAAAGGAAAGC  150

seq1  CAGGAGGACAACTTGAAAGTAACTACTGACAAGAAAATGCTTGGGGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGACAACTTGAAAGTAACTACTGACAAGAAAATGCTTGGGGCTAT  200

seq1  GCGAGTGAATCCAAAGTCACAAATGGAACACTAGAAAGGTAAAAACACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTGAATCCAAAGTCACAAATGGAACACTAGAAAGGTAAAAACACCA  250

seq1  GGAAACCATTGAAAGAAGGCATAGATAGCATGTTAAATCAGTCCAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCATTGAAAGAAGGCATAGATAGCATGTTAAATCAGTCCAAGACA  300

seq1  GTGGCCATGTGGGTTTCAACCAGCAAAGGCTATCTATAGTAGTATAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATGTGGGTTTCAACCAGCAAAGGCTATCTATAGTAGTATAATTG  350

seq1  ATTCAATTTGTAATATCTTCCAATGGTATCTTGTTGCAGTAAAGGAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTTGTAATATCTTCCAATGGTATCTTGTTGCAGTAAAGGAATGC  400

seq1  AAATAACACAAGTAGAACTTAACAGTGACCAACCACTTTTAGGATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACACAAGTAGAACTTAACAGTGACCAACCACTTTTAGGATATATA  450

seq1  TAATTTTTGAGACCGTTCAAGTGTACATACTAGAGTTATTGCATAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTGAGACCGTTCAAGTGTACATACTAGAGTTATTGCATAATAAA  500

seq1  TTGCATATTCTTTACTTCTTAGCTTCCCAAATCTCTACTTACTTGTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATTCTTTACTTCTTAGCTTCCCAAATCTCTACTTACTTGTATTA  550

seq1  TACTTACTACTTATTTGTATTATAAGGCTAAATGAGTTTTACTTCTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTACTTATTTGTATTATAAGGCTAAATGAGTTTTACTTCTTCTC  600

seq1  AGCACTTACTAATTTTAATGTGACCCTTGTTACTGTCTAATTAGTAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTACTAATTTTAATGTGACCCTTGTTACTGTCTAATTAGTAGTTA  650

seq1  TTCAATTCCTACCTCCATTTCTACACTTTGGCTGTTAAAAACCAGTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCCTACCTCCATTTCTACACTTTGGCTGTTAAAAACCAGTGCTA  700

seq1  CTTTCAAATATCTTTTTTAGACTTTTGCACTATTAAAATGTGTGTATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATATCTTTTTTAGACTTTTGCACTATTAAAATGTGTGTATGCC  750

seq1  AAGAGGTCATGGTTTGTTAATAATACACCATGTTTGTGCAAAAT-AAAAA  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGAGGTCATGGTTTGTTAATAATACACCATGTTTGTGCAAAATAAAAAA  800

seq1  CAAACAAGCTGCATATATTCTCCTTGATGGATAAGAATAGTTCAGGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGCTGCATATATTCTCCTTGATGGATAAGAATAGTTCAGGAAAA  850

seq1  TCTGAGTCCCCAAGCCAGGTGCAGCCACCAGCCACCATAACTCCCAGGCA  899
      |||||||||||||||||||||||||||||||||||||| |||||   |||
seq2  TCTGAGTCCCCAAGCCAGGTGCAGCCACCAGCCACCATTACTCC--AGCA  898

seq1  GGACTATGGAGCATAAATAAATTTTATGACTCAGTCCAGCTAAATTTTAT  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGACTATGGAGCATAAATAAATTTTATGACTCAGTCCAGCT-AATTTTAT  947

seq1  TATATATTTAGGGAGGAATTGTAGCCTCCCTCAGCCTTGAAGCAGGCTGA  999
      |||||||||||||||||| ||||||||||||||||  ||||||| |||||
seq2  TATATATTTAGGGAGGAA-TGTAGCCTCCCTCAGC--TGAAGCA-GCTGA  993

seq1  TCCAGACTTTGACCTTGCTGCCACTAAGAAGGAGATTACCTAAGGTAGAG  1049
      | ||||| |||| ||||||| |||||   |||||||   || ||  ||||
seq2  T-CAGAC-TTGA-CTTGCTG-CACTA--GAGGAGAT--ACTTAGTAAGAG  1035

seq1  CTTTCTGACCTTGATGGCTCTATTTGCTCTTCGTCAAAACTCTGCTTTCT  1099
      |||||||| |||||||||| || |||||| ||||  ||||||||||||| 
seq2  CTTTCTGA-CTTGATGGCT-TA-TTGCTC-TCGTTCAAACTCTGCTTTCC  1081

seq1  CCTGAAAGGTCCTTGAGACGTTCTGGAGACACACCCTGT  1138
       ||||   || ||||| ||| |||||  |||||||||||
seq2  TCTGA---GTTCTTGA-ACGGTCTGGGAACACACCCTGT  1116