BAC Information

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BAC

Clone NameB6Ng01-092H11
ChromosomeX (Build37)
Map Location 73,177,157 - 73,301,601
singlet/doubletdoublet
Overlap geneEG635295, LOC667537
Upstream geneEG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b, EG635243, Pls3, LOC635275
Downstream geneLOC385472, LOC100041147, EG238829, Magea7, 4930428D18Rik, EG544974, 4930468A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092H11.bB6Ng01-092H11.g
ACCDH904222DH904223
length8851,147
definitionDH904222|Mus musculus domesticus DNA, BAC clone: B6Ng01-092H11, 5' end.DH904223|Mus musculus domesticus DNA, BAC clone: B6Ng01-092H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,177,157 - 73,178,041)(73,300,943 - 73,301,601)
sequence
gaattcaatgtcaagtggctctcctcattccttttgtattatgcatttta
ttattttattttgtatttttatttgtgtgtgtgcacccacttgagagtgc
acatgctcctatgccaaggcaagtatgtgggagtcaattctccatttcta
ccatatgggtcctaaggatggaactctggttgtcaggtttagtggctgct
gagctatcttgatggccttcactttcctttctgaggcaagatctctctaa
tagaccatggaggtggtcaatttgtctagtctggatagccagcatcctcc
agagatggtcctttttctaccttggtaactctgtgatgggagccctgcac
agtcattcttgatttttcatgggtattggggtatggattttggttttcat
gctggtccaataagcattttatttattgagctatttccccagttctcatt
gataacttcttgctaatatactttttgattgatttttaaaaaaatttatt
cattttatatgtatgcatgttttacacacacacacacacacacacacaca
tgcatggaagttaatgaaagggtgtgaagctctatatggatatgctggaa
actgaaccaaggtcctaatgcaagagaaacaagtgcttttaactgatgaa
ccctttctccagctccatgttttgtattttatgtaaatatattatcatat
ccccctatgtcaaaaaatataaatactccttatgagaaatataaaatatt
actataggtaaagaaaattgaaggagaaaagaactggtttagttttgttc
agttattattttatttgaggcaggatcttctaatatagccttgggtggtc
tggaactcataacaaagcacagaattgttcttgac
gaattctcacctaaggaatcccgaatggctgagaaacacctgaaaaaaaa
atgttcaacatcctttatcatcagggaaatgcaaatcaaaacaaccttga
gaatccacctcacaccagtcagaatggctaacatgaaaaattcaggtgtc
agcagatgctggcgaggatgtggagaaagaggaacacctctccattgttg
gtgggattggaagctggtacaaccactctggaaatcagtttggtggttcc
tccggaaattggacataatactactggaggatccagcaatacctctcctg
ggcatatatccagaagatgttccaaccggtaagaaggacacatgctccac
tatgttcatagcagccttatttataatagccagaatctggaaagaaccca
gatgtccctcaacagaggaatgaatacagaaaatgtggtacattcacaca
atggagtactactcagctattaaatacaatgaactcatgaaattcttagg
caaatggaataatctggaggatatcatcatgagtgaggtaacccaatcac
aaaagaacacacatgatagcactcactgataagtggttattaacccagaa
acttagactacccaagatacaatttgcaaaacacatgaaactcaagaaga
atgaagaccaaagtgtggatacttcatttcttcttagaatagggaacaaa
atacccacagaaataggtacagaaacaaagttcagagctgagacagaaga
aaggaccgtccagagactgccccaccctgggatccatctcatataatttt
tgccttttaagaacagaaaaatccttaagccttttctttaacaagttgga
aggatgtatggttgaggtcttgcccttaggaccagggtaatagaccttcc
taatgctgcacacttaaaacaaagtcagaaagcagacatgttctttgcca
gatatcataagatggtctctatccatttgtgatactcttcggctctgaga
ctacttaatccaggtcttcacattgcatatagctctcatacttcatcttc
catccttatcaattgagacagaatcaccataccattaattttcttgtacc
aataccacaatctgtatatgtccggtttcctcctctcctctcccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_73177157_73178041
seq2: B6Ng01-092H11.b_48_932

seq1  GAATTCAATGTCAAGTGGCTCTCCTCATTCCTTTTGTATTATGCATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTCAAGTGGCTCTCCTCATTCCTTTTGTATTATGCATTTTA  50

seq1  TTATTTTATTTTGTATTTTTATTTGTGTGTGTGCACCCACTTGAGAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTTGTATTTTTATTTGTGTGTGTGCACCCACTTGAGAGTGC  100

seq1  ACATGCTCCTATGCCAAGGCAAGTATGTGGGAGTCAATTCTCCATTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTCCTATGCCAAGGCAAGTATGTGGGAGTCAATTCTCCATTTCTA  150

seq1  CCATATGGGTCCTAAGGATGGAACTCTGGTTGTCAGGTTTAGTGGCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGGGTCCTAAGGATGGAACTCTGGTTGTCAGGTTTAGTGGCTGCT  200

seq1  GAGCTATCTTGATGGCCTTCACTTTCCTTTCTGAGGCAAGATCTCTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATCTTGATGGCCTTCACTTTCCTTTCTGAGGCAAGATCTCTCTAA  250

seq1  TAGACCATGGAGGTGGTCAATTTGTCTAGTCTGGATAGCCAGCATCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCATGGAGGTGGTCAATTTGTCTAGTCTGGATAGCCAGCATCCTCC  300

seq1  AGAGATGGTCCTTTTTCTACCTTGGTAACTCTGTGATGGGAGCCCTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGTCCTTTTTCTACCTTGGTAACTCTGTGATGGGAGCCCTGCAC  350

seq1  AGTCATTCTTGATTTTTCATGGGTATTGGGGTATGGATTTTGGTTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCTTGATTTTTCATGGGTATTGGGGTATGGATTTTGGTTTTCAT  400

seq1  GCTGGTCCAATAAGCATTTTATTTATTGAGCTATTTCCCCAGTTCTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCCAATAAGCATTTTATTTATTGAGCTATTTCCCCAGTTCTCATT  450

seq1  GATAACTTCTTGCTAATATACTTTTTGATTGATTTTTAAAAAAATTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTCTTGCTAATATACTTTTTGATTGATTTTTAAAAAAATTTATT  500

seq1  CATTTTATATGTATGCATGTTTTACACACACACACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATATGTATGCATGTTTTACACACACACACACACACACACACACA  550

seq1  TGCATGGAAGTTAATGAAAGGGTGTGAAGCTCTATATGGATATGCTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGAAGTTAATGAAAGGGTGTGAAGCTCTATATGGATATGCTGGAA  600

seq1  ACTGAACCAAGGTCCTAATGCAAGAGAAACAAGTGCTTTTAACTGATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCAAGGTCCTAATGCAAGAGAAACAAGTGCTTTTAACTGATGAA  650

seq1  CCCTTTCTCCAGCTCCATGTTTTGTATTTTATGTAAATATATTATCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCCAGCTCCATGTTTTGTATTTTATGTAAATATATTATCATAT  700

seq1  CCCCCTATGTC-AAAAATATAAATACTCCTTATGAGAAAATATAAAATAT  749
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  CCCCCTATGTCAAAAAATATAAATACTCCTTATGAG-AAATATAAAATAT  749

seq1  TACTATAGGTAAAGAAAATTGAAGGAG-AAAGAACTGGTTTTAGTTTTTG  798
      ||||||||||||||||||||||||||| |||||||||| ||||| |||||
seq2  TACTATAGGTAAAGAAAATTGAAGGAGAAAAGAACTGG-TTTAG-TTTTG  797

seq1  TTCAGTTATTATTTTATTTGAGGCAGGATCTTCCTATATAGCCCTGGGTG  848
      |||||||||||||||||||||||||||||||||  |||||||| ||||||
seq2  TTCAGTTATTATTTTATTTGAGGCAGGATCTTCTAATATAGCCTTGGGTG  847

seq1  GTCTGGTACTCATTACAAAGCACAG-ACTGTTCTTGAC  885
      |||||| |||||| ||||||||||| | ||||||||||
seq2  GTCTGGAACTCATAACAAAGCACAGAATTGTTCTTGAC  885

seq1: chrX_73300943_73301601
seq2: B6Ng01-092H11.g_677_1213 (reverse)

seq1  GAGGGGAGAGGGGGAGGGAGAGGGGGAGGGGGAGGGGGAGGGACAGGGAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAAACCCTGACATATACAGAT  150
             ||| |||||| ||||||   ||| || || |||||||||||||
seq2  -------GAG-GGGAGA-GGAGAG---GAGGAAACCGGACATATACAGAT  38

seq1  TGTGGTATTGTGTTACAAG-AAATATATGGTATGGTGATTCTGGTCTCAA  199
      ||||||||  || |||||| ||||  |||||||||||||||| |||||||
seq2  TGTGGTAT--TGGTACAAGAAAATTAATGGTATGGTGATTCT-GTCTCAA  85

seq1  TTGATTAGGGATGGGAAGATTGAAGTATTGAGAGCTATATGCATTGTGGA  249
      |||| || |||| |||||| ||||||| ||||||||||||||| |||| |
seq2  TTGA-TAAGGAT-GGAAGA-TGAAGTA-TGAGAGCTATATGCAATGTGAA  131

seq1  GACCTGGATTAAGTAGTCTCAGAGCCGAAGAGTATTCACAAATGGATAGA  299
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACCTGGATTAAGTAGTCTCAGAGCCGAAGAGTA-TCACAAATGGATAGA  180

seq1  GACCATTCTTATGATATCTTGGCAAAGAACATGTCTGCTTTCTGACTTTG  349
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  GACCA-TCTTATGATATC-TGGCAAAGAACATGTCTGCTTTCTGACTTTG  228

seq1  TTTTAAGTGTTGCAGCATTAGGAAGGTCTATTACCCTGGTCCTAAGGGCA  399
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTG-TGCAGCATTAGGAAGGTCTATTACCCTGGTCCTAAGGGCA  277

seq1  AGACCTCAACCATACATCCTTCCAACTTGTTAAAGAAAAGGCTTAAGGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCAACCATACATCCTTCCAACTTGTTAAAGAAAAGGCTTAAGGAT  327

seq1  TTTTCTGTTCTTAAAAGGCAAAAATTATATGAGATGGATCCCAGGGTGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTCTTAAAAGGCAAAAATTATATGAGATGGATCCCAGGGTGGG  377

seq1  GCAGTCTCTGGACGGTCCTTTCTTCTGTCTCAGCTCTGAACTTTGTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCTGGACGGTCCTTTCTTCTGTCTCAGCTCTGAACTTTGTTTCT  427

seq1  GTACCTATTTCTGTGGGTATTTTGTTCCCTATTCTAAGAAGAAATGAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTATTTCTGTGGGTATTTTGTTCCCTATTCTAAGAAGAAATGAAGT  477

seq1  ATCCACACTTTGGTCTTCATTCTTCTTGAGTTTCATGTGTTTTGCAAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACTTTGGTCTTCATTCTTCTTGAGTTTCATGTGTTTTGCAAATT  527

seq1  GTATCTTGGG  659
      ||||||||||
seq2  GTATCTTGGG  537