BAC Information

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BAC

Clone NameB6Ng01-097B13
ChromosomeX (Build37)X (Build37)
Map Location 159,109,764 - 159,110,23660,126,752 - 60,127,891
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRai2, Gm47, Nhs, Reps2, LOC654358, LOC100041557
Downstream geneLOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097B13.bB6Ng01-097B13.g
ACCDH907559DH907560
length1,0501,135
definitionDH907559|Mus musculus domesticus DNA, BAC clone: B6Ng01-097B13, 5' end.DH907560|Mus musculus domesticus DNA, BAC clone: B6Ng01-097B13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(159,109,764 - 159,110,236)(60,126,752 - 60,127,891)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgatttgttaatt
aggattttgtccctgtgccctttagtgagtctagctaagggtttatctat
cttgttgattttctcaaagaaccaactcctcgtttggttaattctttgaa
tagttcttcttgtttccacttggttgatttcacccctgagtttgattatt
tcctgccgtctactcctcttgggtgaatttgcttccttttttctagggct
tttagatgtgttgcaagctgctagtatgtgctctctcctgtttcttctgg
aggcacttagcgctatgagttcccctataaatgctttcatggtcccatag
gttgggtacgtgggcttcattccattaactctaaaagcctttaaattctt

gaattcctggggccatatccctttgtgctaaacttttggctattgatata
ttatgagaaatggcagttattttcttcaattgtgtacctacttattaact
gaagaaatttcagtgaatagctacttatctgtggtcaggcataggacctt
atgtaaactcaaggagtcacaaatcaagacaaatctaatttgtagggaaa
ggagtggtttgacaatggtggaaaggatataagagaaaatctagggctag
aacaagcagaatctattttatgcatgtaagaaattgtaaaggcatgattt
aattagtaagaaattgctaaaattgtctatatgaactctgtcaggaatgg
caaaatagtagattcaatgctaaataaaaatggacaattttatctgtagg
ataagtatagtgggaattttgatgaagtctctaaccatttaagttacaga
gctgatgagccaacaaattttaaataatagagtttaataattgttgacag
tgcaatacttgcactaacctttagcatttaaatttgggtgtgtgggacat
tggtacaggagcagtttatctttctctttagatcacaatgcttcgggttt
caggtaattctcttatgatatacaattgggagtcacactcccaagcttaa
agattctttctttgagcccacctcagttttctttcctctgctggaatgta
ttacttttttccctctgctaaacaaaactcacatttaagactcaaaccaa
atattgttcctgatctaattaagagtatatatatatattctataaatact
ttaatatctatatatagatatattctataaatactttaatatctattaaa
ctgaagtgggtcattgaaaatttaattttatggttacacaaaatagagta
taggtttctttttagtttgagactagtttttcagatttattcctctccag
ccatgtatctcgccatgtatgttcagtacatataacataatttagggcca
taactgtcatattaggttgatgttgcatcctaaatcctataatattttaa
aactgcaccaaagaataaataaaattttaaatgttttgtataggatggat
ccaaaacatgttttaacatgagaagcaagctattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159109764_159110236
seq2: B6Ng01-097B13.b_639_1096 (reverse)

seq1  AAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTAC  50
      ||||| |||||| | |||||||| ||||||  ||||||||  | ||||||
seq2  AAGAATTTAAAGGC-TTTTAGAG-TTAATG-GAATGAAGC--CCACGTAC  45

seq1  CCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGC  100
      || ||||||||||  || ||||||||||||   | |||| ||||||||||
seq2  CC-AACCTATGGG--ACCATGAAAGCATTT---ATAGGGGAACTCATAGC  89

seq1  GCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCTTGA  150
      ||| ||||||||| ||||||||| ||||| ||||||||||||||||||| 
seq2  GCTAAGTGCCTCC-AGAAGAAACAGGAGAGAGCACATACTAGCAGCTTG-  137

seq1  CAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAACACATCTAAAAGCCCTAG-AAAAAAGGAAGCAAATTCACCCAAGAGG  186

seq1  AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGA  236

seq1  AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTG  286

seq1  AGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCAC  336

seq1  AGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAAC  400
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGGACAAAATCCTAATTAAC-AAATCAGAAATGAAAAGGGAGACATAAC  385

seq1  AACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGC  435

seq1  TATACTCAACAAAACTGGAAAAC  473
      |||||||||||||||||||||||
seq2  TATACTCAACAAAACTGGAAAAC  458

seq1: chrX_60126752_60127891
seq2: B6Ng01-097B13.g_70_1204

seq1  GAATTCCTGGGGCCATATCCCTTTGTGCTAAACTTTTGGCTATTGATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGGCCATATCCCTTTGTGCTAAACTTTTGGCTATTGATATA  50

seq1  TTATGAGAAATGGCAGTTATTTTCTTCAATTGTGTACCTACTTATTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGAAATGGCAGTTATTTTCTTCAATTGTGTACCTACTTATTAACT  100

seq1  GAAGAAATTTCAGTGAATAGCTACTTATCTGTGGTCAGGCATAGGACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATTTCAGTGAATAGCTACTTATCTGTGGTCAGGCATAGGACCTT  150

seq1  ATGTAAACTCAAGGAGTCACAAATCAAGACAAATCTAATTTGTAGGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACTCAAGGAGTCACAAATCAAGACAAATCTAATTTGTAGGGAAA  200

seq1  GGAGTGGTTTGACAATGGTGGAAAGGATATAAGAGAAAATCTAGGGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGTTTGACAATGGTGGAAAGGATATAAGAGAAAATCTAGGGCTAG  250

seq1  AACAAGCAGAATCTATTTTATGCATGTAAGAAATTGTAAAGGCATGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCAGAATCTATTTTATGCATGTAAGAAATTGTAAAGGCATGATTT  300

seq1  AATTAGTAAGAAATTGCTAAAATTGTCTATATGAACTCTGTCAGGAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTAAGAAATTGCTAAAATTGTCTATATGAACTCTGTCAGGAATGG  350

seq1  CAAAATAGTAGATTCAATGCTAAATAAAAATGGACAATTTTATCTGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGTAGATTCAATGCTAAATAAAAATGGACAATTTTATCTGTAGG  400

seq1  ATAAGTATAGTGGGAATTTTGATGAAGTCTCTAACCATTTAAGTTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTATAGTGGGAATTTTGATGAAGTCTCTAACCATTTAAGTTACAGA  450

seq1  GCTGATGAGCCAACAAATTTTAAATAATAGAGTTTAATAATTGTTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGAGCCAACAAATTTTAAATAATAGAGTTTAATAATTGTTGACAG  500

seq1  TGCAATACTTGCACTAACCTTTAGCATTTAAATTTGGGTGTGTGGGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATACTTGCACTAACCTTTAGCATTTAAATTTGGGTGTGTGGGACAT  550

seq1  TGGTACAGGAGCAGTTTATCTTTCTCTTTAGATCACAATGCTTCGGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGGAGCAGTTTATCTTTCTCTTTAGATCACAATGCTTCGGGTTT  600

seq1  CAGGTAATTCTCTTATGATATACAATTGGGAGTCACACTCCCAAGCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAATTCTCTTATGATATACAATTGGGAGTCACACTCCCAAGCTTAA  650

seq1  AGATTCTTTCTTTGAGCCCACCTCAGTTTTCTTTCCTCTGCTGGAATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTTCTTTGAGCCCACCTCAGTTTTCTTTCCTCTGCTGGAATGTA  700

seq1  TTAC-TTTTTCCCTCTGCTAAACAAAACTCACATTTAAGACTCAAACCAA  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTTCCCTCTGCTAAACAAAACTCACATTTAAGACTCAAACCAA  750

seq1  ATATTGTTCCTGATCTAATTAAGAGTATATATATATATTCTATAAATACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTCCTGATCTAATTAAGAGTATATATATATATTCTATAAATACT  800

seq1  TTAATATCTATATATAGATATATTCTATAAATACTTTAATATCTATTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCTATATATAGATATATTCTATAAATACTTTAATATCTATTAAA  850

seq1  CTGAAGTGGGTCATTGAAAATTTAATTTTATGGTTACACAAAATAGAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGGGTCATTGAAAATTTAATTTTATGGTTACACAAAATAGAGTA  900

seq1  TAGGTTTCTTTTTTAGTTTGAGACTAGTTTTTCAGATTTATTCCTCTCCA  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTC-TTTTTAGTTTGAGACTAGTTTTTCAGATTTATTCCTCTCCA  949

seq1  GCCATGTATCTTCGCCATGTATGTTCAGTACATATAACATAATTTAGGGC  999
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTATC-TCGCCATGTATGTTCAGTACATATAACATAATTTAGGGC  998

seq1  CATAACTGTCATATTAGGTTGATGTTGCATCCTTAAATCTTAATATATTT  1049
      |||||||||||||||||||||||||||||||| |||||| ||  ||||||
seq2  CATAACTGTCATATTAGGTTGATGTTGCATCC-TAAATCCTATAATATTT  1047

seq1  TAAAACTGCTACAAAGAATAATAAATATTTTAAATGTTTTTGTAT-GAGT  1098
      |||||||||  ||||||||||  || |||||||||| |||||||| |  |
seq2  TAAAACTGCACCAAAGAATAAATAAAATTTTAAATG-TTTTGTATAGGAT  1096

seq1  GAATCCACAAACATGTTTTAAACATGAGAGGCAAAGCTATTT  1140
      | ||||| ||||||||||| ||||||||| || |||||||||
seq2  GGATCCA-AAACATGTTTT-AACATGAGAAGC-AAGCTATTT  1135