BAC Information

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BAC

Clone NameB6Ng01-100E06
ChromosomeX (Build37)
Map Location 87,862,794 - 88,003,098
singlet/doubletdoublet
Overlap geneLOC629471
Upstream gene4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615
Downstream geneLOC100041815, Gm44, LOC670074, LOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100E06.bB6Ng01-100E06.g
ACCDH909812DH909813
length9891,183
definitionDH909812|Mus musculus domesticus DNA, BAC clone: B6Ng01-100E06, 5' end.DH909813|Mus musculus domesticus DNA, BAC clone: B6Ng01-100E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,862,794 - 87,863,341)(88,001,909 - 88,003,098)
sequence
gaattcatctgtacctttccatttttgaaggaatgctttaaaaagagcag
tattcattcctctgttgaggggcatctgggttctttccagcttctggcta
ttataaataaggctgctatgaacatagtggagcatgtgtccttcttaccg
gttgggacatcttctggatatatgcccaggaaaggtattgtgggatcctc
cggtagtactatgtccaattttctgaggaaccgccagactgatttccagg
gtcgttgtacaagcttgcaatcccaccaacaatggaggagtgttcctctt
tctccacatcctcggcagcatctgctgtcacctgaatttttgatcttagc
cattctgactggtgtgagatggaatttcagggttgttttgatttgcattt
ctttgatgattaaggatgttgaacatttttttcaggtgcttctcagccat
tcggtattccttgggtgagaattctttgtttagctctgagccccatcttt
taaggaggttgtttgattttctggagtccatcctcttgagttctagtact
actcagctattaaaaagaattaatttatgaaattcctaggcaaatggttc
gacctggagggcatcatcctgagtggggtaacacaatcacaaaagaactc
aaataatatgtactcactgataagtagatattagcccagaaacttagtat
agggagatataaggtacaatttgcaaaacacatgaaactgaagaagaacg
aagaccaaagtatggacactttgccccttcttagaattggaaacaatcat
ccatggaaggagttacagagacaaagtttggagctgagtcaaaaggatgg
accatcaagagactgcaatatccagagatccatcccataattagcctcca
aacgatgacaccattgcatacactagcaagcgtttgttgcatgaccatga
tatagctgtctcttggtgagactaggcggggcctagcaa
gaattctggaaaacagtgagatagtggaaacacaacaaacatttgatata
tccccagtcatttttttcgttttacttgacatctgaaattttgatagagc
atatttctgtcacatgaaagggaggatgaaaagagatgctctacttttga
ttttgtgatcttcattatcatttataatcctaattggtaaaacatggtgc
aacacataattacaaacaaaatgtatttctctgagaaatacagtcattga
cttattcttggaagaagaagtgatggttaacaacatcagttaaagtccct
tcagatgtcaataatatgtaatgcatgttcctaatcttaaccaactctga
agagataaactatctagacaaaataattaatcttaaaatatgttatatca
tgtgtttaatatcagagaaaatgaattagaatgttgtcaaaaagtatagc
ataaagcacatgaattttaaagaagtctttaaaattatgaaagaacttat
tgtagtataaactaaaaagttaactggaaactcttagtctcagtattgtc
agaaataatattaatgtaaaagagagtgataagaaaaatattgaaaaaaa
ctaaaattgaagaaataaaggtatttttgaaatatataaaaagctatatt
aaaaccattgccttccttataaatttttaaataatcacattcatattcaa
tcactgactatcttagttcataccaatatgagtttcttatctcatattct
gtgtatgataaatttaacttaggtctttttcttattaattcctttagaat
tccatatgttgtttttttgtttgtttgtgtttttgagtttttgagacagt
gtttctctgtataaccctggctgtcctggaactcactttgtagaccaggc
tgggctcgaactcagaaatccacctgcctctgcctcccaagtgctgtgat
taaaggtgtgtgccaacactgcctagcagaattccatatgttgtgttttc
agtatactgaccctctccaactcctccaagactcacaccctcttctatac
taccgaactttatgttgtaattttttgaaccactggaggccatttttttg
ctactatttatcctcttgggtgtgagaatattgcaacctacctggcagcc
tatctaagaaagcctactctttctctcttcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_87862794_87863341
seq2: B6Ng01-100E06.b_49_596

seq1  GAATTCATCTGTACCTTTCCATTTTTGAAGGAATGCTTTAAAAAGAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGTACCTTTCCATTTTTGAAGGAATGCTTTAAAAAGAGCAG  50

seq1  TATTCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTA  100

seq1  TTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCG  150

seq1  GTTGGGACATCTTCTGGATATATGCCCAGGAAAGGTATTGTGGGATCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGACATCTTCTGGATATATGCCCAGGAAAGGTATTGTGGGATCCTC  200

seq1  CGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGG  250

seq1  GTCGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTT  300

seq1  TCTCCACATCCTCGGCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACATCCTCGGCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGC  350

seq1  CATTCTGACTGGTGTGAGATGGAATTTCAGGGTTGTTTTGATTTGCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGACTGGTGTGAGATGGAATTTCAGGGTTGTTTTGATTTGCATTT  400

seq1  CTTTGATGATTAAGGATGTTGAACATTTTTTTCAGGTGCTTCTCAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGATTAAGGATGTTGAACATTTTTTTCAGGTGCTTCTCAGCCAT  450

seq1  TCGGTATTCCTTGGGTGAGAATTCTTTGTTTAGCTCTGAGCCCCATCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTATTCCTTGGGTGAGAATTCTTTGTTTAGCTCTGAGCCCCATCTTT  500

seq1  TAAGGAGGTTGTTTGATTTTCTGGAGTCCATCCTCTTGAGTTCTAGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGGTTGTTTGATTTTCTGGAGTCCATCCTCTTGAGTTCTAGTA  548

seq1: chrX_88001909_88003098
seq2: B6Ng01-100E06.g_66_1248 (reverse)

seq1  ATTGAA-AGAGGAAGAGTTAGCTTTCTTTAAGGATATGGCTG-CAGGTAG  48
      |||||| |||| ||||||  ||||||||    |||| ||||| |||||||
seq2  ATTGAAGAGAGAAAGAGTAGGCTTTCTT---AGATA-GGCTGCCAGGTAG  46

seq1  GTTGACAATAAATCTACACACCCAAGAGTATATA-GGTAGCAAAAAAATG  97
      |||| |||| | ||| |||||||||||| ||| |  ||||||||||||||
seq2  GTTG-CAAT-ATTCT-CACACCCAAGAGGATAAATAGTAGCAAAAAAATG  93

seq1  GCCT-CAGTGGGTTCAAAAAAATAACAACATAAAGTTCGGTAAGTATAGA  146
      |||| |||| ||||| ||||||| ||||||||||||||||| ||||||||
seq2  GCCTCCAGT-GGTTC-AAAAAATTACAACATAAAGTTCGGT-AGTATAGA  140

seq1  AGAGGGTGTGAGTCTTGGAGGAGTTGGGAGAGGGTCAGTATACTGAAAAC  196
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAGGGTGTGAGTCTTGGAGGAGTT-GGAGAGGGTCAGTATACTGAAAAC  189

seq1  ACAACATATGGAATTCTGCTAGGCAGTGTTGGCACACACCTTTAATCACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATATGGAATTCTGCTAGGCAGTGTTGGCACACACCTTTAATCACA  239

seq1  GCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGG  296
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGCCCAGCCTGG  289

seq1  TCTACAAAGTGAGTTCCAGGACAGCCAGGGTTATACAGAGAAACACTGTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTGAGTTCCAGGACAGCCAGGGTTATACAGAGAAACACTGTC  339

seq1  TCAAAAACTCAAAAACACAAACAAACAAAAAAACAACATATGGAATTCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACTCAAAAACACAAACAAACAAAAAAACAACATATGGAATTCTA  389

seq1  AAGGAATTAATAAGAAAAAGACCTAAGTTAAATTTATCATACACAGAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTAATAAGAAAAAGACCTAAGTTAAATTTATCATACACAGAATA  439

seq1  TGAGATAAGAAACTCATATTGGTATGAACTAAGATAGTCAGTGATTGAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAGAAACTCATATTGGTATGAACTAAGATAGTCAGTGATTGAAT  489

seq1  ATGAATGTGATTATTTAAAAATTTATAAGGAAGGCAATGGTTTTAATATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTGATTATTTAAAAATTTATAAGGAAGGCAATGGTTTTAATATA  539

seq1  GCTTTTTATATATTTCAAAAATACCTTTATTTCTTCAATTTTAGTTTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTATATATTTCAAAAATACCTTTATTTCTTCAATTTTAGTTTTTT  589

seq1  TCAATATTTTTCTTATCACTCTCTTTTACATTAATATTATTTCTGACAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTTTTCTTATCACTCTCTTTTACATTAATATTATTTCTGACAAT  639

seq1  ACTGAGACTAAGAGTTTCCAGTTAACTTTTTAGTTTATACTACAATAAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACTAAGAGTTTCCAGTTAACTTTTTAGTTTATACTACAATAAGT  689

seq1  TCTTTCATAATTTTAAAGACTTCTTTAAAATTCATGTGCTTTATGCTATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATAATTTTAAAGACTTCTTTAAAATTCATGTGCTTTATGCTATA  739

seq1  CTTTTTGACAACATTCTAATTCATTTTCTCTGATATTAAACACATGATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGACAACATTCTAATTCATTTTCTCTGATATTAAACACATGATAT  789

seq1  AACATATTTTAAGATTAATTATTTTGTCTAGATAGTTTATCTCTTCAGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTTTAAGATTAATTATTTTGTCTAGATAGTTTATCTCTTCAGAG  839

seq1  TTGGTTAAGATTAGGAACATGCATTACATATTATTGACATCTGAAGGGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAAGATTAGGAACATGCATTACATATTATTGACATCTGAAGGGAC  889

seq1  TTTAACTGATGTTGTTAACCATCACTTCTTCTTCCAAGAATAAGTCAATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGATGTTGTTAACCATCACTTCTTCTTCCAAGAATAAGTCAATG  939

seq1  ACTGTATTTCTCAGAGAAATACATTTTGTTTGTAATTATGTGTTGCACCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTCTCAGAGAAATACATTTTGTTTGTAATTATGTGTTGCACCA  989

seq1  TGTTTTACCAATTAGGATTATAAATGATAATGAAGATCACAAAATCAAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACCAATTAGGATTATAAATGATAATGAAGATCACAAAATCAAAA  1039

seq1  GTAGAGCATCTCTTTTCATCCTCCCTTTCATGTGACAGAAATATGCTCTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCATCTCTTTTCATCCTCCCTTTCATGTGACAGAAATATGCTCTA  1089

seq1  TCAAAATTTCAGATGTCAAGTAAAACGAAAAAAATGACTGGGGATATATC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTTCAGATGTCAAGTAAAACGAAAAAAATGACTGGGGATATATC  1139

seq1  AAATGTTTGTTGTGTTTCCACTATCTCACTGTTTTCCAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGTTGTGTTTCCACTATCTCACTGTTTTCCAGAATTC  1183