BAC Information

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BAC

Clone NameB6Ng01-100G18
ChromosomeX (Build37)
Map Location 68,188,866 - 68,332,197
singlet/doubletdoublet
Overlap genePpia-psx_466.1, EG628080, G630014P10Rik
Upstream gene1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993
Downstream geneLOC667013, Mtm1, Mtmr1, Cd99l2, LOC667017, Hmgb3, LOC100040549, Gpr50, LOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100G18.bB6Ng01-100G18.g
ACCDH909926DH909927
length9561,094
definitionDH909926|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G18, 5' end.DH909927|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,331,233 - 68,332,197)(68,188,866 - 68,189,966)
sequence
gaattctttttttctcccttaccatttctgctattccttaactctatata
gggagcaagacctttgtcttttctgtgcctaagtgttctcttctgcaaaa
tggtgacaacaaaaataaagtctacccatcaagtaatgtggtggtggtgg
tgaggagagcataatgtgcaggacattgacaatcaagagggtaaccttac
aaggaacagcttttgggcctgatcttctcagaggattccaaaggccccta
acacatatacttggcaagaaagggtaggcttgaaaaatatccagcacttt
tttcttccttccagtatcccccctcaccctattgctttacatttgagaac
agtcacagatcatagtataaattagtactcaggattacaggatgagagca
attatggaggtatgcatttgtcgatgtgagtctagtgctcatactaatct
tccttatcattttctttatcatggaagggaactttccattaaatgctgtt
agtataagctctggttggcagatatggaaatttgatgtctgtccagagtc
ttgggctcaggttttaaccacagatgccatgtaggttgagtcttattcta
gattttgagggtaattaaagcccagaaggggaagccactgacacatctgg
aagagaaggcccaagaaaagatgtcttctggttccaagtattttatattc
ttcagggtcccacatgttgtcattccctaggcaccttcccaatgaagccc
caagatcctcagagtaattcctaacatagggcctcttctgtgggatgaag
aattctctgataaggtatggtgccattttgcttctctacaactcactttt
taaagggtgataagaaaggcaagaagggccctagaataaagacagtgctc
taaggataaaataggtatcctcatacttgttctctcctgacttatccggg
ccaagt
gaattcacctatgctgggcctgtggacagtggatactaggtaaaggctgc
ccaactgggatcaacactatttaaacagactaagctaatttgttggggct
ttgctatgattgaaagtctatgttttgaatgagtcctcatttaaactgaa
atctaatttgtaaggtcttggggggtcaggctttagaaagaagcagatga
attaggtggtctctgctctgtgtgaggaatgcaatcatggtccctggcac
ttcagacttgggttgttgtttattgcaggtggctgctttgtttattttat
tcatcacagcagattgaggagaatatgttttgacaaaaaaatgtttgaaa
gagccaattgcttttgctaccaatttatgtcctcttgccacctgtttgct
acgtcctcagctggtgttcttgcagggacattcaggtacggggcaatgaa
gaagcagaaagaatactcgttttaaaaaaaaaagagtcaaatatttaacc
tcagacacatcaatttcttttagaaaatccaggtgaattcatttaagaag
ccatggcacttgaatagaggtctttctaactccagctcggaaacaaggat
tctctgagtaaaacgttactctacaacccacctcaataaaaggcacgagg
ctactggccctgccagggaagcagggcctactggagcctccaggacttct
ttctatgacctaagaacagcactggacaaagcctttggccaatagtccta
agagattatttgcctgtgccaaggaagagctgcactgggtattggcacaa
tacagacttcagaagcagcagaccaggaatagtaggtcagtacagaaaga
cttctccaaggcaggtttgcgtgctggagatgagtcttagtgacacagag
ctgtagtgttaatagtcaaccaggcaccaagtgtggtatttgtcttgggt
cagtgttttttagtatcctgatgacaaaaagggctttatctggccagtgc
tatgaatctataaagcgtcctaggtttttttatcagattccattttatca
aagagaatgctgagtctgggcaagccagacactaggatcacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_68331233_68332197
seq2: B6Ng01-100G18.b_46_1001 (reverse)

seq1  ACTTGGCTTTGACCCGGAATAAGTCAGGAGAGAACAGTTATGAGGATACC  50
      ||||||      ||||| ||||||||||||||||||  ||||||||||||
seq2  ACTTGG------CCCGG-ATAAGTCAGGAGAGAACAAGTATGAGGATACC  43

seq1  TATTTTTATCCTTAGAGCACTGTCTTTATTCTAGGGCCCTTCTTGCCTTT  100
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTTTATCCTTAGAGCACTGTCTTTATTCTAGGGCCCTTCTTGCCTTT  92

seq1  CTTATCACCCTTTAAAAAGCTGAGTTGTAGAGAAGCAAAATGGCACCATA  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTATCACCCTTTAAAAAG-TGAGTTGTAGAGAAGCAAAATGGCACCATA  141

seq1  CCTTATCAGAGAATTCTTCATCCCACAGAAGAGGCCCTATGTTAGGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCAGAGAATTCTTCATCCCACAGAAGAGGCCCTATGTTAGGAATT  191

seq1  ACTCTGAGGATCTTGGGGCTTCATTGGGAAGGTGCCTAGGGAATGACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGGATCTTGGGGCTTCATTGGGAAGGTGCCTAGGGAATGACAAC  241

seq1  ATGTGGGACCCTGAAGAATATAAAATACTTGGAACCAGAAGACATCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGACCCTGAAGAATATAAAATACTTGGAACCAGAAGACATCTTTT  291

seq1  CTTGGGCCTTCTCTTCCAGATGTGTCAGTGGCTTCCCCTTCTGGGCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCCTTCTCTTCCAGATGTGTCAGTGGCTTCCCCTTCTGGGCTTTA  341

seq1  ATTACCCTCAAAATCTAGAATAAGACTCAACCTACATGGCATCTGTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCTCAAAATCTAGAATAAGACTCAACCTACATGGCATCTGTGGTT  391

seq1  AAAACCTGAGCCCAAGACTCTGGACAGACATCAAATTTCCATATCTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGAGCCCAAGACTCTGGACAGACATCAAATTTCCATATCTGCCA  441

seq1  ACCAGAGCTTATACTAACAGCATTTAATGGAAAGTTCCCTTCCATGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGCTTATACTAACAGCATTTAATGGAAAGTTCCCTTCCATGATAA  491

seq1  AGAAAATGATAAGGAAGATTAGTATGAGCACTAGACTCACATCGACAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGATAAGGAAGATTAGTATGAGCACTAGACTCACATCGACAAAT  541

seq1  GCATACCTCCATAATTGCTCTCATCCTGTAATCCTGAGTACTAATTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCTCCATAATTGCTCTCATCCTGTAATCCTGAGTACTAATTTATA  591

seq1  CTATGATCTGTGACTGTTCTCAAATGTAAAGCAATAGGGTGAGGGGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATCTGTGACTGTTCTCAAATGTAAAGCAATAGGGTGAGGGGGGAT  641

seq1  ACTGGAAGGAAGAAAAAAGTGCTGGATATTTTTCAAGCCTACCCTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGGAAGAAAAAAGTGCTGGATATTTTTCAAGCCTACCCTTTCTT  691

seq1  GCCAAGTATATGTGTTAGGGGCCTTTGGAATCCTCTGAGAAGATCAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTATATGTGTTAGGGGCCTTTGGAATCCTCTGAGAAGATCAGGCC  741

seq1  CAAAAGCTGTTCCTTGTAAGGTTACCCTCTTGATTGTCAATGTCCTGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTGTTCCTTGTAAGGTTACCCTCTTGATTGTCAATGTCCTGCAC  791

seq1  ATTATGCTCTCCTCACCACCACCACCACATTACTTGATGGGTAGACTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCTCTCCTCACCACCACCACCACATTACTTGATGGGTAGACTTTA  841

seq1  TTTTTGTTGTCACCATTTTGCAGAAGAGAACACTTAGGCACAGAAAAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGTCACCATTTTGCAGAAGAGAACACTTAGGCACAGAAAAGAC  891

seq1  AAAGGTCTTGCTCCCTATATAGAGTTAAGGAATAGCAGAAATGGTAAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCTTGCTCCCTATATAGAGTTAAGGAATAGCAGAAATGGTAAGGG  941

seq1  AGAAAAAAAGAATTC  965
      |||||||||||||||
seq2  AGAAAAAAAGAATTC  956

seq1: chrX_68188866_68189966
seq2: B6Ng01-100G18.g_65_1158

seq1  GAATTCACCTATGCTGGGCCTGTGGACAGTGGATACTAGGTAAAGGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTATGCTGGGCCTGTGGACAGTGGATACTAGGTAAAGGCTGC  50

seq1  CCAACTGGGATCAACACTATTTAAACAGACTAAGCTAATTTGTTGGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGGGATCAACACTATTTAAACAGACTAAGCTAATTTGTTGGGGCT  100

seq1  TTGCTATGATTGAAAGTCTATGTTTTGAATGAGTCCTCATTTAAACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATGATTGAAAGTCTATGTTTTGAATGAGTCCTCATTTAAACTGAA  150

seq1  ATCTAATTTGTAAGGTCTTGGGGGGTCAGGCTTTAGAAAGAAGCAGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATTTGTAAGGTCTTGGGGGGTCAGGCTTTAGAAAGAAGCAGATGA  200

seq1  ATTAGGTGGTCTCTGCTCTGTGTGAGGAATGCAATCATGGTCCCTGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTGGTCTCTGCTCTGTGTGAGGAATGCAATCATGGTCCCTGGCAC  250

seq1  TTCAGACTTGGGTTGTTGTTTATTGCAGGTGGCTGCTTTGTTTATTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTTGGGTTGTTGTTTATTGCAGGTGGCTGCTTTGTTTATTTTAT  300

seq1  TCATCACAGCAGATTGAGGAGAATATGTTTTGACAAAAAAATGTTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACAGCAGATTGAGGAGAATATGTTTTGACAAAAAAATGTTTGAAA  350

seq1  GAGCCAATTGCTTTTGCTACCAATTTATGTCCTCTTGCCACCTGTTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATTGCTTTTGCTACCAATTTATGTCCTCTTGCCACCTGTTTGCT  400

seq1  ACGTCCTCAGCTGGTGTTCTTGCAGGGACATTCAGGTACGGGGCAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCTCAGCTGGTGTTCTTGCAGGGACATTCAGGTACGGGGCAATGAA  450

seq1  GAAGCAGAAAGAATACTCGTTTTAAAAAAAAAAGAGTCAAATATTTAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAAAGAATACTCGTTTTAAAAAAAAAAGAGTCAAATATTTAACC  500

seq1  TCAGACACATCAATTTCTTTTAGAAAATCCAGGTGAATTCATTTAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACATCAATTTCTTTTAGAAAATCCAGGTGAATTCATTTAAGAAG  550

seq1  CCATGGCACTTGAATAGAGGTCTTTCTAACTCCAGCTCGGAAACAAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCACTTGAATAGAGGTCTTTCTAACTCCAGCTCGGAAACAAGGAT  600

seq1  TCTCTGAGTAAAACGTTACTCTACAACCCACCTCAATAAAAGGCACGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTAAAACGTTACTCTACAACCCACCTCAATAAAAGGCACGAGG  650

seq1  CTACTGGCCCTGCCAGGGAAGCAGGGCCTACTGGAGCCTCCAGGACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGCCCTGCCAGGGAAGCAGGGCCTACTGGAGCCTCCAGGACTTCT  700

seq1  TTCTATGACCTAAGAACAGCACTGGACAAAGCCTTTGGCCAATAGTCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGACCTAAGAACAGCACTGGACAAAGCCTTTGGCCAATAGTCCTA  750

seq1  AGAGATTATTTGCCTGTGCCAAGGAAGAGCTGCACTGGGTATTGGCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTATTTGCCTGTGCCAAGGAAGAGCTGCACTGGGTATTGGCACAA  800

seq1  TACAGACTTCAGAAGCAGCAGACCAGGAATAGTAGGTCAGGTACAGAAGG  850
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  TACAGACTTCAGAAGCAGCAGACCAGGAATAGTAGGTCA-GTACAGAAAG  849

seq1  ACTTCTCCAAGGCAGGTTTGCGTGCTGGAGATGAGTCTTAGGTGACACAG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTTCTCCAAGGCAGGTTTGCGTGCTGGAGATGAGTCTTA-GTGACACAG  898

seq1  AGCTGTAGTGTTAATAGTCAACCAGGCACCAAGTGTGGGTATTTGTCTTG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCTGTAGTGTTAATAGTCAACCAGGCACCAAGTGT-GGTATTTGTCTTG  947

seq1  GGTCAGGTGTTTTTTAGTATCCTGATGACAGAAAGGGCTTTTATCTTGGG  1000
      ||||| |||||||||||||||||||||||| ||||||| |||||||  ||
seq2  GGTCA-GTGTTTTTTAGTATCCTGATGACAAAAAGGGC-TTTATCT--GG  993

seq1  CCAGTGCTATGAATCTAT-AAGCCTCTAAGTTTTTTTTATCAGA-TCCAT  1048
      |||||||||||||||||| |||| ||  || ||||||||||||| |||||
seq2  CCAGTGCTATGAATCTATAAAGCGTCCTAGGTTTTTTTATCAGATTCCAT  1043

seq1  TTTATCAAAGAGAATGGCTGAGGTCCTGGCCAGCCAGACACTAGGATCAC  1098
      ||||||||||||||| ||||| |||  ||| |||||||||||||||||||
seq2  TTTATCAAAGAGAAT-GCTGA-GTCTGGGCAAGCCAGACACTAGGATCAC  1091

seq1  ACT  1101
      |||
seq2  ACT  1094