BAC Information

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BAC

Clone NameB6Ng01-100J19
ChromosomeX (Build37)
Map Location 93,507,614 - 93,645,868
singlet/doubletdoublet
Overlap geneB230358A15Rik
Upstream geneLOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l, Msn, Psmb7-ps1, LOC668221, Vsig4
Downstream geneHeph, Gpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l, Eda2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100J19.bB6Ng01-100J19.g
ACCDH910055DH910056
length1,1191,093
definitionDH910055|Mus musculus domesticus DNA, BAC clone: B6Ng01-100J19, 5' end.DH910056|Mus musculus domesticus DNA, BAC clone: B6Ng01-100J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,507,614 - 93,508,742)(93,644,778 - 93,645,868)
sequence
gaattccctcagagtctagccccattattggttaatgatgaaagataatg
gttccatttatacagcttccgtagttgaagaaatcattctgagagaatag
ggttttatttttctctaaaaagagcaacaatgagattttaccaaattaaa
gggaaatatttgcaagtatacttttaaagacagttgtctaggaggaattg
tgtttccttattatttgtaaataagtgaggattttcttttaattttattg
ttttatatatttcatgattttattattaatatatataattaatatacaat
tgcatgacttacctccctctagtccctcccaagtcccatgcctttaactc
agttcatgcattcaccctcactcagcaaggaagattggtttttattttgt
tttgagacagtttctctgtgtagccctgcctgtcctagaacttactctgt
agaccaggctgacctagaattcacagagatccttctgcctctgcctccca
agtgctgggattaaaggtgtgtgccaccataccaggctgaggaagatttt
aataaagaaagttttataaaaacataaactagatgctcattttttgtatt
tctctttcattttccagaagaagaaaaaaacctatggctatttcataacc
caataccttgctgatggcactttggaggggctgaagggaagatatcattt
tgagcaatcaatataaaggcaggaaagtcacaaatttgagttgacgagct
tacctcactgaaatgatcagagtcataatttaatgccttcctagatagta
atgaatttagctctaacaaatttcctttcagtatgatgcatatccttttt
atcccttcaatgaaaacacagagatggggagtgaaggtggatgtaaacca
tggatgttattattactccaagaagcaatctttcataaatctcaacagac
aatgaattgaaagattacacaggttctcactagaaaccataaccaatatt
tcactttgcccttttcagttacaaacatcacatttatagactataagctc
tactgccttaatatttccgaatggatgcagcaggtaaacacaggtagagg
tagcccactttccagtgaa
gaattcttaaatataggtatccacatatgtacctttttacatgcatgaac
catgtgggggtctaggacagttttattctatatatattctgatcacaata
ctcttaggtttcatgggtatttgcgtattgtgggtagtgtgacctggtac
ctggaagaataacttttactttacccttttcaattagttagattttcaac
cctcataaattaatttcatttttattttctcagaaaacacttggaaaatg
gatatgaagcttttgttttattctctttgtgtcagaaagaaaccttttga
agttaggaagacagcttaatggataaagtatgaagacattagtttggatc
cccagaacaatataaaggctgagtggtagcacacacctgtaatcttagtt
ctgctacaaggagatgaggtcatagccagagataatagaatcttcaggag
ctcacactcagttagcctggcatatgtggcagtggggtagacaacccatc
tcaaacaagatagggacccaacattagaaattcttctctgaccaccacac
aagtactcacattcacacacacaaatattaagagtttcatatgcacaacc
attataatacaaccagctttccatgaaattgaacacaataaaatctcagg
ttatagtctatacagtagaaactgggtttcttttcagctatacttttcaa
atcagtcacttttatgtctatcactcctctggaaaatggttactctttgc
atggaaagaaacctagattgaggcagaacagagcctcacccacaaggttt
taaatctcatttcctgaaatttataaacaattatattacgtggcaaaggt
catttaagatcaaagaagtattaatcacctagtcacctggttgctaatca
tttggccttaaaatgggcagatgatcctggttttctgggtgggccaagtg
tttagctgactgatcctttaatgtagaagagaaagcaaaagaaacttatc
aaagtaaggaactataaagaagtcaatccactactgcaaataaaatattc
ttaataaaaatttattttaaaaagggaggaaattttcctacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_93507614_93508742
seq2: B6Ng01-100J19.b_43_1161

seq1  GAATTCCCTCAGAGTCTAGCCCCATTATTGGTTAATGATGAAAGATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAGAGTCTAGCCCCATTATTGGTTAATGATGAAAGATAATG  50

seq1  GTTCCATTTATACAGCTTCCGTAGTTGAAGAAATCATTCTGAGAGAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTTATACAGCTTCCGTAGTTGAAGAAATCATTCTGAGAGAATAG  100

seq1  GGTTTTATTTTTCTCTAAAAAGAGCAACAATGAGATTTTACCAAATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTTTTCTCTAAAAAGAGCAACAATGAGATTTTACCAAATTAAA  150

seq1  GGGAAATATTTGCAAGTATACTTTTAAAGACAGTTGTCTAGGAGGAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATATTTGCAAGTATACTTTTAAAGACAGTTGTCTAGGAGGAATTG  200

seq1  TGTTTCCTTATTATTTGTAAATAAGTGAGGATTTTCTTTTAATTTTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTTATTATTTGTAAATAAGTGAGGATTTTCTTTTAATTTTATTG  250

seq1  TTTTATATATTTCATGATTTTATTATTAATATATATAATTAATATACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATATTTCATGATTTTATTATTAATATATATAATTAATATACAAT  300

seq1  TGCATGACTTACCTCCCTCTAGTCCCTCCCAAGTCCCATGCCTTTAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGACTTACCTCCCTCTAGTCCCTCCCAAGTCCCATGCCTTTAACTC  350

seq1  AGTTCATGCATTCACCCTCACTCAGCAAGGAAGATTGGTTTTTATTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGCATTCACCCTCACTCAGCAAGGAAGATTGGTTTTTATTTTGT  400

seq1  TTTGAGACAGTTTCTCTGTGTAGCCCTGCCTGTCCTAGAACTTACTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGTTTCTCTGTGTAGCCCTGCCTGTCCTAGAACTTACTCTGT  450

seq1  AGACCAGGCTGACCTAGAATTCACAGAGATCCTTCTGCCTCTGCCTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGACCTAGAATTCACAGAGATCCTTCTGCCTCTGCCTCCCA  500

seq1  AGTGCTGGGATTAAAGGTGTGTGCCACCATACCAGGCTGAGGAAGATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGTGTGTGCCACCATACCAGGCTGAGGAAGATTTT  550

seq1  AATAAAGAAAGTTTTATAAAAACATAAACTAGATGCTCATTTTTTGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAAGTTTTATAAAAACATAAACTAGATGCTCATTTTTTGTATT  600

seq1  TCTCTTTCATTTTCCAGAAGAAGAAAAAAACCTATGGCTATTTCATAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCATTTTCCAGAAGAAGAAAAAAACCTATGGCTATTTCATAACC  650

seq1  CAATACCTTGCTGATGGCACTTTGGAGGGGCTGAAGGGAAGATATCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCTTGCTGATGGCACTTTGGAGGGGCTGAAGGGAAGATATCATTT  700

seq1  TGAGCAATCAATATAAAGGCAGGAAAGTCACAAATTTGAGTTGACGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATCAATATAAAGGCAGGAAAGTCACAAATTTGAGTTGACGAGCT  750

seq1  TACCTCACTGAAATGATCAGAGTCATAATTCAATGCCTTCCTAGATAGTA  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TACCTCACTGAAATGATCAGAGTCATAATTTAATGCCTTCCTAGATAGTA  800

seq1  ATGAATTTAGCTCTAACAAATTTCC-TTCAGTATGATGCATATCCTTTTT  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGAATTTAGCTCTAACAAATTTCCTTTCAGTATGATGCATATCCTTTTT  850

seq1  ATCCCTTCAATGAAAAACACAGAGATGGGGAGTGAAGGTGGATGTAAACC  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCAATG-AAAACACAGAGATGGGGAGTGAAGGTGGATGTAAACC  899

seq1  ATGGATGTTATTATTACTTCCAAGAAGCAATCTTTCATAAAAACTCAACA  949
      ||||||||||||||||| |||||||||||||||||||| ||| |||||||
seq2  ATGGATGTTATTATTAC-TCCAAGAAGCAATCTTTCAT-AAATCTCAACA  947

seq1  GACAATGAATTGAAAAGATTACACCAGGTTCTCAACTAAGAAACCATAAA  999
      |||||||||||| |||||||||| ||||||||| ||| ||||||||| ||
seq2  GACAATGAATTG-AAAGATTACA-CAGGTTCTC-ACT-AGAAACCAT-AA  992

seq1  CCAATATTTCACTTTTTGCACTTTTTCAGTTACAAACATCACATTTATAG  1049
      ||||||||||||  ||||| | ||||||||||||||||||||||||||||
seq2  CCAATATTTCAC--TTTGC-CCTTTTCAGTTACAAACATCACATTTATAG  1039

seq1  ACTATAAAGCCTACTGCTATAATATTTCAGAATTGATGCAGCAGTTATAA  1099
      |||||||   |||||||  ||||||||| |||| |||||||||| || ||
seq2  ACTATAAGCTCTACTGCCTTAATATTTCCGAATGGATGCAGCAGGTA-AA  1088

seq1  CACAGTTAGA-GTAGCCCACTTCTCAGTGAA  1129
      ||||| |||| |||||||||||  |||||||
seq2  CACAGGTAGAGGTAGCCCACTTTCCAGTGAA  1119

seq1: chrX_93644778_93645868
seq2: B6Ng01-100J19.g_67_1159 (reverse)

seq1  CTGTA-GAAAATTTCCTCCCTTTTTTTAAAAATAAA-TTTTATTA--GAT  46
      ||||| |||||||||||||||||||   |||||||| ||||||||   ||
seq2  CTGTAGGAAAATTTCCTCCCTTTTT---AAAATAAATTTTTATTAAGAAT  47

seq1  ATTTTATTTTGCAGTAGTGGATTGACTTC-TTATAGTTCCTTACTTTGAT  95
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTTTA-TTTGCAGTAGTGGATTGACTTCTTTATAGTTCCTTACTTTGAT  96

seq1  -AGTTTCTTTTGCTTTCTCTTCTACATTAATGGATCAGTCAGCT-AACAC  143
       ||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  AAGTTTCTTTTGCTTTCTCTTCTACATTAAAGGATCAGTCAGCTAAACAC  146

seq1  TTGGCCCACCCAGAAAACCAGGATCATCTGCCCATTTTAAGGCCAAATGA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCACCCAGAAAACCAGGATCATCTGCCCATTTTAAGGCCAAATGA  196

seq1  TTAGCAACCAGGTGACTAGGTGATTAATTACTTCTTTGATCTTAATTGAC  243
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  TTAGCAACCAGGTGACTAGGTGATTAA-TACTTCTTTGATCTTAAATGAC  245

seq1  CTTTGCCACGTAATATAATTGTTTATAAATTTCAGGAAATGAGATTTAAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCACGTAATATAATTGTTTATAAATTTCAGGAAATGAGATTTAAA  295

seq1  ACCTTGTGGGTGAGGCTCTGTTCTGCCTCAATCTAGGTTTCTTTCCATGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGGGTGAGGCTCTGTTCTGCCTCAATCTAGGTTTCTTTCCATGC  345

seq1  AAAGAGTAACCATTTTCCAGAGGAGTGATAGACATAAAAGTGACTGATTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAACCATTTTCCAGAGGAGTGATAGACATAAAAGTGACTGATTT  395

seq1  GAAAAGTATAGCTGAAAAGAAACCCAGTTTCTACTGTATAGACTATAACC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTATAGCTGAAAAGAAACCCAGTTTCTACTGTATAGACTATAACC  445

seq1  TGAGATTTTATTGTGTTCAATTTCATGGAAAGCTGGTTGTATTATAATGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTATTGTGTTCAATTTCATGGAAAGCTGGTTGTATTATAATGG  495

seq1  TTGTGCATATGAAACTCTTAATATTTGTGTGTGTGAATGTGAGTACTTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATATGAAACTCTTAATATTTGTGTGTGTGAATGTGAGTACTTGT  545

seq1  GTGGTGGTCAGAGAAGAATTTCTAATGTTGGGTCCCTATCTTGTTTGAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTCAGAGAAGAATTTCTAATGTTGGGTCCCTATCTTGTTTGAGA  595

seq1  TGGGTTGTCTACCCCACTGCCACATATGCCAGGCTAACTGAGTGTGAGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTCTACCCCACTGCCACATATGCCAGGCTAACTGAGTGTGAGCT  645

seq1  CCTGAAGATTCTATTATCTCTGGCTATGACCTCATCTCCTTGTAGCAGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGATTCTATTATCTCTGGCTATGACCTCATCTCCTTGTAGCAGAA  695

seq1  CTAAGATTACAGGTGTGTGCTACCACTCAGCCTTTATATTGTTCTGGGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTACAGGTGTGTGCTACCACTCAGCCTTTATATTGTTCTGGGGA  745

seq1  TCCAAACTAATGTCTTCATACTTTATCCATTAAGCTGTCTTCCTAACTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTAATGTCTTCATACTTTATCCATTAAGCTGTCTTCCTAACTTC  795

seq1  AAAAGGTTTCTTTCTGACACAAAGAGAATAAAACAAAAGCTTCATATCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTCTTTCTGACACAAAGAGAATAAAACAAAAGCTTCATATCCA  845

seq1  TTTTCCAAGTGTTTTCTGAGAAAATAAAAATGAAATTAATTTATGAGGGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAGTGTTTTCTGAGAAAATAAAAATGAAATTAATTTATGAGGGT  895

seq1  TGAAAATCTAACTAATTGAAAAGGGTAAAGTAAAAGTTATTCTTCCAGGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTAACTAATTGAAAAGGGTAAAGTAAAAGTTATTCTTCCAGGT  945

seq1  ACCAGGTCACACTACCCACAATACGCAAATACCCATGAAACCTAAGAGTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTCACACTACCCACAATACGCAAATACCCATGAAACCTAAGAGTA  995

seq1  TTGTGATCAGAATATATATAGAATAAAACTGTCCTAGACCCCCACATGGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATCAGAATATATATAGAATAAAACTGTCCTAGACCCCCACATGGT  1045

seq1  TCATGCATGTAAAAAGGTACATATGTGGATACCTATATTTAAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATGTAAAAAGGTACATATGTGGATACCTATATTTAAGAATTC  1093