BAC Information

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BAC

Clone NameB6Ng01-101G17
ChromosomeX (Build37)
Map Location 158,502,169 - 158,659,842
singlet/doubletdoublet
Overlap geneNhs
Upstream geneScml2, LOC414364, Prkaca-ps1, Rai2, Gm47
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101G17.bB6Ng01-101G17.g
ACCDH910609DH910610
length1,111983
definitionDH910609|Mus musculus domesticus DNA, BAC clone: B6Ng01-101G17, 5' end.DH910610|Mus musculus domesticus DNA, BAC clone: B6Ng01-101G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,658,721 - 158,659,842)(158,502,169 - 158,502,713)
sequence
gaattcctgataatctaactgttgtatttgctcctcatgttccttgtctc
agacgaaagcttaaaggacattgcaccaatgtctcgggctgacagcagat
cctaggtctgtagcctgcctctcatgagttctttacactgggcttttagt
tttcatctgctctctgaaatctagtggaccttgatgatttgagcaccctg
ctggcacattatgcaaccacttaaaatgagtggaatgatgagttcactag
ttggcctaaaggatgcatgcaaacctactaattagcctttcattctccag
ggactggaactagatgatgccgtatataggaagccaaaacttgtatggaa
cctggagcaacttggtcaactgaggccaaaaaatagcatgctctctttga
attgcatagggctttctagaaggggtggctaaacttagttgtcaaacttg
acatgcttgacaagaggaaaactcatgtaaggaattgcttccatcacaat
tgtcgtaggtatgtctacgaggtattttcttgattgctaatgggtgtagg
atgccaagcccactgtggatagtgccaaccccagtcatgtgggcttggga
ctggctaaaaaacgtagttggtagcaagttactaagcagtgtttctccat
ggtttctgcttaaagctcctatcatgactttcctgccttgccttccccat
ggtgacgaactataacttgtaagctaaaacaaactttggcctccccaact
ttcttttagtcatggtgtttgtcacggcaacagaaagcaaactaggacag
gatcccttcaggtcatcgatgggacacatggataagggagtgagaaaagc
ttgcgaagtagcttcctgtgtctgtcttgatcattttcaaagataactgg
agagctgaatagcctttgggttggaaaacttccagcattaccatacagag
gcctacttgacactctaaattatgtcttgtgaatgttagcccttgtgaca
aacttcttactggagttggatagattagtccctgctactgtgctggacct
tctgtttctcatcaatttccttgggtccatacacatttcccatagagtca
cattgaccagc
gaattcattaatgatgtcatcatatcgagtctcccctttcattctgatgt
cattatatcgagtctcccctttcattctctgttcatttctaccaccacca
cctgcaattctcttatttttacgtgcatctcttatttgtctgtgttctaa
catcaagagtgaaactctttagaaggctttgtatctctaggttcagctaa
atggtgattacagcaagattgatatagcatgctgtataatagtttcctcc
aagattaaaacatttgacccttcagggaagctccttaaataggaaggtaa
acaatttaaaagagtttcaggaagtccctaaaactgagcagattcactag
gcccctccctctcagaataagcaattaaagttgagagtccctcctcggac
ttcctgaactcagactctcagaggagaaaagcagcaaagacaactgggag
cccagcctggctgcctgaaagaagcagaaactagatgagctgcctagaag
agatttagaccacccgagacatctaaaaaggacactatccaactgattga
gctgcttgcagactatgcagcgtgctccagattcccagctttgtaagctg
tcacctgtgctggaatgggctttggtgatgcagttctctttgagacattt
ctgcgcctgtaagtaacccctcacccatattcttgtagaaattcattagt
tcactaaattggatttggagaatgtctgtactttggtctgtcatgagttc
cctacctgggatgagtagagatgcatgttgcactacctcaggaaaatttt
gtcacacacacggtagatgctgtagtgtgtcactaatatcactttccctc
tcattctgtaatgatgcacccccaactccagttgctgggacagttaggtt
gtaagagcttacatctgtttatggcccttgaaattgccttgtttagaaga
aagttgtatcagtcaaggttcctgccttctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158658721_158659842
seq2: B6Ng01-101G17.b_43_1153 (reverse)

seq1  GCTGGTCAATGTGACTCCCTTATTGGGAATTGTGGTTATGAACCCAAGGA  50
      |||||||||||||||||   || |||||| ||||  |||| |||||||||
seq2  GCTGGTCAATGTGACTC---TA-TGGGAAATGTG--TATGGACCCAAGGA  44

seq1  AATATGATGAGAAAACAGAAGGGTTCCAGCACAGTAGCAGGGACTAATCT  100
      ||| ||||||| ||||||||||  ||||||||||||||||||||||||||
seq2  AAT-TGATGAG-AAACAGAAGG--TCCAGCACAGTAGCAGGGACTAATCT  90

seq1  ATCCAACTCCAGTAAGAAGTTTGTCACAAGGGCTAACATTTCACAAGACA  150
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCCAACTCCAGTAAGAAGTTTGTCACAAGGGCTAACA-TTCACAAGACA  139

seq1  TAATTTAGAGTGTCAAGTAGGCCTCTGTATGGTAATGCTGGAAGTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAGAGTGTCAAGTAGGCCTCTGTATGGTAATGCTGGAAGTTTTCC  189

seq1  AACCCAAAGGCTATTCAGCTCTCCAGTTATCTTTGAAAATGATCAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAGGCTATTCAGCTCTCCAGTTATCTTTGAAAATGATCAAGACA  239

seq1  GACACAGGAAGCTACTTCGCAAGCTTTTCTCACTCCCTTATCCATGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGAAGCTACTTCGCAAGCTTTTCTCACTCCCTTATCCATGTGTC  289

seq1  CCATCGATGACCTGAAGGGATCCTGTCCTAGTTTGCTTTCTGTTGCCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGATGACCTGAAGGGATCCTGTCCTAGTTTGCTTTCTGTTGCCGTG  339

seq1  ACAAACACCATGACTAAAAGAAAGTTGGGGAGGCCAAAGTTTGTTTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACCATGACTAAAAGAAAGTTGGGGAGGCCAAAGTTTGTTTTAGC  389

seq1  TTACAAGTTATAGTTCGTCACCATGGGGAAGGCAAGGCAGGAAAGTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGTTATAGTTCGTCACCATGGGGAAGGCAAGGCAGGAAAGTCATG  439

seq1  ATAGGAGCTTTAAGCAGAAACCATGGAGAAACACTGCTTAGTAACTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGCTTTAAGCAGAAACCATGGAGAAACACTGCTTAGTAACTTGCT  489

seq1  ACCAACTACGTTTTTTAGCCAGTCCCAAGCCCACATGACTGGGGTTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTACGTTTTTTAGCCAGTCCCAAGCCCACATGACTGGGGTTGGCA  539

seq1  CTATCCACAGTGGGCTTGGCATCCTACACCCATTAGCAATCAAGAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCACAGTGGGCTTGGCATCCTACACCCATTAGCAATCAAGAAAATA  589

seq1  CCTCGTAGACATACCTACGACAATTGTGATGGAAGCAATTCCTTACATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTAGACATACCTACGACAATTGTGATGGAAGCAATTCCTTACATGA  639

seq1  GTTTTCCTCTTGTCAAGCATGTCAAGTTTGACAACTAAGTTTAGCCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTCTTGTCAAGCATGTCAAGTTTGACAACTAAGTTTAGCCACCC  689

seq1  CTTCTAGAAAGCCCTATGCAATTCAAAGAGAGCATGCTATTTTTTGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAAAGCCCTATGCAATTCAAAGAGAGCATGCTATTTTTTGGCCT  739

seq1  CAGTTGACCAAGTTGCTCCAGGTTCCATACAAGTTTTGGCTTCCTATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGACCAAGTTGCTCCAGGTTCCATACAAGTTTTGGCTTCCTATATA  789

seq1  CGGCATCATCTAGTTCCAGTCCCTGGAGAATGAAAGGCTAATTAGTAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATCATCTAGTTCCAGTCCCTGGAGAATGAAAGGCTAATTAGTAGGT  839

seq1  TTGCATGCATCCTTTAGGCCAACTAGTGAACTCATCATTCCACTCATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCATCCTTTAGGCCAACTAGTGAACTCATCATTCCACTCATTTT  889

seq1  AAGTGGTTGCATAATGTGCCAGCAGGGTGCTCAAATCATCAAGGTCCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTTGCATAATGTGCCAGCAGGGTGCTCAAATCATCAAGGTCCACT  939

seq1  AGATTTCAGAGAGCAGATGAAAACTAAAAGCCCAGTGTAAAGAACTCATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCAGAGAGCAGATGAAAACTAAAAGCCCAGTGTAAAGAACTCATG  989

seq1  AGAGGCAGGCTACAGACCTAGGATCTGCTGTCAGCCCGAGACATTGGTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCTACAGACCTAGGATCTGCTGTCAGCCCGAGACATTGGTGC  1039

seq1  AATGTCCTTTAAGCTTTCGTCTGAGACAAGGAACATGAGGAGCAAATACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTTTAAGCTTTCGTCTGAGACAAGGAACATGAGGAGCAAATACA  1089

seq1  ACAGTTAGATTATCAGGAATTC  1122
      ||||||||||||||||||||||
seq2  ACAGTTAGATTATCAGGAATTC  1111

seq1: chrX_158502169_158502713
seq2: B6Ng01-101G17.g_68_612

seq1  GAATTCATTAATGATGTCATCATATCGAGTCTCCCCTTTCATTCTGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATGATGTCATCATATCGAGTCTCCCCTTTCATTCTGATGT  50

seq1  CATTATATCGAGTCTCCCCTTTCATTCTCTGTTCATTTCTACCACCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATCGAGTCTCCCCTTTCATTCTCTGTTCATTTCTACCACCACCA  100

seq1  CCTGCAATTCTCTTATTTTTACGTGCATCTCTTATTTGTCTGTGTTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAATTCTCTTATTTTTACGTGCATCTCTTATTTGTCTGTGTTCTAA  150

seq1  CATCAAGAGTGAAACTCTTTAGAAGGCTTTGTATCTCTAGGTTCAGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGAGTGAAACTCTTTAGAAGGCTTTGTATCTCTAGGTTCAGCTAA  200

seq1  ATGGTGATTACAGCAAGATTGATATAGCATGCTGTATAATAGTTTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATTACAGCAAGATTGATATAGCATGCTGTATAATAGTTTCCTCC  250

seq1  AAGATTAAAACATTTGACCCTTCAGGGAAGCTCCTTAAATAGGAAGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAAACATTTGACCCTTCAGGGAAGCTCCTTAAATAGGAAGGTAA  300

seq1  ACAATTTAAAAGAGTTTCAGGAAGTCCCTAAAACTGAGCAGATTCACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAAAAGAGTTTCAGGAAGTCCCTAAAACTGAGCAGATTCACTAG  350

seq1  GCCCCTCCCTCTCAGAATAAGCAATTAAAGTTGAGAGTCCCTCCTCGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCCTCTCAGAATAAGCAATTAAAGTTGAGAGTCCCTCCTCGGAC  400

seq1  TTCCTGAACTCAGACTCTCAGAGGAGAAAAGCAGCAAAGACAACTGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAACTCAGACTCTCAGAGGAGAAAAGCAGCAAAGACAACTGGGAG  450

seq1  CCCAGCCTGGCTGCCTGAAAGAAGCAGAAACTAGATGAGCTGCCTAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTGGCTGCCTGAAAGAAGCAGAAACTAGATGAGCTGCCTAGAAG  500

seq1  AGATTTAGACCACCCGAGACATCTAAAAAGGACACTATCCAACTG  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGACCACCCGAGACATCTAAAAAGGACACTATCCAACTG  545