BAC Information

Click to search

BAC

Clone NameB6Ng01-102E21
ChromosomeX (Build37)
Map Location 137,880,759 - 137,926,149
singlet/doubletdoublet
Overlap geneCol4a6, Col4a5
Upstream geneEG245643, LOC666424, Prps1, Tsc22d3, Mid2, LOC619612, Tex13, LOC632685, Vsig1, Psmd10, Atg4a, LOC100038961
Downstream geneIrs4, LOC633596, EG666488, LOC622901, EG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102E21.bB6Ng01-102E21.g
ACCDH911234DH911235
length1,109362
definitionDH911234|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E21, 5' end.DH911235|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,880,759 - 137,881,869)(137,925,782 - 137,926,149)
sequence
gaattcaatataatgttttcagagtgtgcgtgctctctctttaaccctat
tttacaagatattattttcacatcttttgcttgttctgatgataaatgct
caagaattatgtttacaactagaacttttcctcaactcttccctcctccc
cactctggaagctctaactagtatgagttaaaatattcacatactatact
ctccacttctttaaaaaatatttcaactgttcattttcctgtctctgtct
tatacttttacatgtttttccttacaggttcccattgtgttcttacctga
agtatagctcacaccgtgaatccattctgagtggtctgctactttactag
agtttactatgtgtaatgctagtcttttagaccaatggttggtaatcatg
tcttttaaaataaaagcactctcacccacactcccaccatccaagcctac
aatagtaaaataaaataaaacacacacacacacagagagagagagagaga
gagagagagagagagagagagagagagagaggagactgttttaattaaag
catgaataaaagcctacttagcttcatccctgttatctacagcatctcaa
aagcattgcacataaaagaatcatttcaaattcattaccatctttaacta
aggtgtaagacacttagttgaatattaaggtctgagacctctaatattta
gcataatattctggaagtacatgttaaatattggtgttatatcctaaatt
taactctcttccattttaataccatgtattttgcttgagtaaatgcatcc
actcctagtttcaactactgccaatttgcctgacattctggtatctatat
gtagtctaaatctctaccaaaaaattacgaattctaatacctctacagtt
atttcaccttgtataagccaacagacagtggacatatccaacttgtatca
ataaactgagcctgtataatgtcttctaagtcttcccatttttttcatat
tagtcattgacatccacatagctagaaacccaggatgagagttggtcttg
ataccaccttctgcccttacccaaatgtactaaatccatgaaattttgac
atttatctc
tttgggaaagattaggaggtgcatcactaggggtggtttttgagctttcc
caaactgtcttcctgccttatgcttgtggatcagatataagctctaagtt
agatctctggagcctctgaacaatgcctgactacctattgccaagttccc
tgtcatgatggtcttaaaaccataagccacaaattaaactctttgtttta
caaattgacttgatcacgattttttgtcacaacaatttaaaaaaaaactt
agatacaagataatatagaaaatttactgtcaatctattacgggtgtgtg
tgtgtgtgcatgtgcatgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_137880759_137881869
seq2: B6Ng01-102E21.b_45_1153

seq1  GAATTCAATATAATGTTTTCAGAGTGTGCGTGCTCTCTCTTTAACCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATAATGTTTTCAGAGTGTGCGTGCTCTCTCTTTAACCCTAT  50

seq1  TTTACAAGATATTATTTTCACATCTTTTGCTTGTTCTGATGATAAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGATATTATTTTCACATCTTTTGCTTGTTCTGATGATAAATGCT  100

seq1  CAAGAATTATGTTTACAACTAGAACTTTTCCTCAACTCTTCCCTCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTATGTTTACAACTAGAACTTTTCCTCAACTCTTCCCTCCTCCC  150

seq1  CACTCTGGAAGCTCTAACTAGTATGAGTTAAAATATTCACATACTATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGAAGCTCTAACTAGTATGAGTTAAAATATTCACATACTATACT  200

seq1  CTCCACTTCTTTAAAAAATATTTCAACTGTTCATTTTCCTGTCTCTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTCTTTAAAAAATATTTCAACTGTTCATTTTCCTGTCTCTGTCT  250

seq1  TATACTTTTACATGTTTTTCCTTACAGGTTCCCATTGTGTTCTTACCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTTACATGTTTTTCCTTACAGGTTCCCATTGTGTTCTTACCTGA  300

seq1  AGTATAGCTCACACCGTGAATCCATTCTGAGTGGTCTGCTACTTTACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGCTCACACCGTGAATCCATTCTGAGTGGTCTGCTACTTTACTAG  350

seq1  AGTTTACTATGTGTAATGCTAGTCTTTTAGACCAATGGTTGGTAATCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTATGTGTAATGCTAGTCTTTTAGACCAATGGTTGGTAATCATG  400

seq1  TCTTTTAAAATAAAAGCACTCTCACCCACACTCCCACCATCCAAGCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAATAAAAGCACTCTCACCCACACTCCCACCATCCAAGCCTAC  450

seq1  AATAGTAAAATAAAATAAAACACACACACACACAGAGAGAGAGAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAAATAAAATAAAACACACACACACACAGAGAGAGAGAGAGAGA  500

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGACTGTTTTAATTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGACTGTTTTAATTAAAG  550

seq1  CATGAATAAAAGCCTACTTAGCTTCATCCCTGTTATCTACAGCATCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAAAAGCCTACTTAGCTTCATCCCTGTTATCTACAGCATCTCAA  600

seq1  AAGCATTGCACATAAAAGAATCATTTCAAATTCATTACCATCTTTAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGCACATAAAAGAATCATTTCAAATTCATTACCATCTTTAACTA  650

seq1  AGGTGTAAGACACTTAGTTGAATATTAAGGTCTGAGACCTCTAATATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAAGACACTTAGTTGAATATTAAGGTCTGAGACCTCTAATATTTA  700

seq1  GCATAATATTCTGGAAGTACATGTTAAATATTGGTGTTATATCCTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATATTCTGGAAGTACATGTTAAATATTGGTGTTATATCCTAAATT  750

seq1  TAACTCTCTTCCATTTTAATACCATGTATTTTGCTTGAGTAAATGCATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTCTTCCATTTTAATACCATGTATTTTGCTTGAGTAAATGCATCC  800

seq1  ACTCCTAGTTTCAACTACTGCCAATTTGCCTGACATTCTGGTATCTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAGTTTCAACTACTGCCAATTTGCCTGACATTCTGGTATCTATAT  850

seq1  GTAGTCTAAATCTCTACCAAAAAATTACGAATTCTAATACCTCTACAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTAAATCTCTACCAAAAAATTACGAATTCTAATACCTCTACAGTT  900

seq1  ATTTCACCTTGTATAAGCCAACAGACAGTGGACATATCCAACTTGTATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACCTTGTATAAGCCAACAGACAGTGGACATATCCAACTTGTATCA  950

seq1  ATAAACTGAGCCTGTATAATGTCTTCTAAGTCTTCCCATTTTTATTCATA  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAAACTGAGCCTGTATAATGTCTTCTAAGTCTTCCCATTTTT-TTCATA  999

seq1  TTAGTCATTGACAT-CACATAGCTAGAAACCCAGGATGAGAGTTGTCCTT  1049
      |||||||||||||| ||||||||||||||||||||||||||||||  |||
seq2  TTAGTCATTGACATCCACATAGCTAGAAACCCAGGATGAGAGTTGGTCTT  1049

seq1  GATACCAACCTCTGCCCTTACCACAAATGTACTAAAT-CATGAAATTTTG  1098
      ||||||| | |||||||||||| |||||||||||||| ||||||||||||
seq2  GATACCACCTTCTGCCCTTACC-CAAATGTACTAAATCCATGAAATTTTG  1098

seq1  ACAATTTTATCTC  1111
      |||  ||||||||
seq2  ACA--TTTATCTC  1109

seq1: chrX_137925782_137926149
seq2: B6Ng01-102E21.g_68_435 (reverse)

seq1  CACACACACACACACACACACACACACACACACACGCACACACACATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACGCACACACACATGCA  50

seq1  CATGCACACACACACACACCCGTAATAGATTGACAGTAAATTTTCTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACACACACACACACCCGTAATAGATTGACAGTAAATTTTCTATAT  100

seq1  TATCTTGTATCTAAGTTTTTTTTTAAATTGTTGTGACAAAAAATCGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTATCTAAGTTTTTTTTTAAATTGTTGTGACAAAAAATCGTGAT  150

seq1  CAAGTCAATTTGTAAAACAAAGAGTTTAATTTGTGGCTTATGGTTTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAATTTGTAAAACAAAGAGTTTAATTTGTGGCTTATGGTTTTAAG  200

seq1  ACCATCATGACAGGGAACTTGGCAATAGGTAGTCAGGCATTGTTCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATGACAGGGAACTTGGCAATAGGTAGTCAGGCATTGTTCAGAGG  250

seq1  CTCCAGAGATCTAACTTAGAGCTTATATCTGATCCACAAGCATAAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGATCTAACTTAGAGCTTATATCTGATCCACAAGCATAAGGCAG  300

seq1  GAAGACAGTTTGGGAAAGCTCAAAAACCACCCCTAGTGATGCACCTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGTTTGGGAAAGCTCAAAAACCACCCCTAGTGATGCACCTCCTA  350

seq1  ATCTTTCCCAAAGAATTC  368
      ||||||||||||||||||
seq2  ATCTTTCCCAAAGAATTC  368