BAC Information

Click to search

BAC

Clone NameB6Ng01-103C04
ChromosomeX (Build37)X (Build37)
Map Location 38,641,006 - 38,642,22938,700,140 - 38,701,304
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039769
Downstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103C04.bB6Ng01-103C04.g
ACCDH911821DH911822
length1,2081,159
definitionDH911821|Mus musculus domesticus DNA, BAC clone: B6Ng01-103C04, 5' end.DH911822|Mus musculus domesticus DNA, BAC clone: B6Ng01-103C04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,641,006 - 38,642,229)(38,700,140 - 38,701,304)
sequence
gaattcagtaattttataggaaatcacaaaatcacagtacacctgatgat
ccttgagtaatttctttttttaaatatatgctgccatcacttcttggcct
tttggctgagatcatacgtaaatatatgctgccctacacagacaaaccca
gtcctgccagttatctatttccaagctgcctggttcagcttcgagagata
tctgggaatatttcacttgcttcagaacttccataaatattcaatgagtc
tgagtgaccagaatagatctgcacatttcttctctttgcagaacatgtaa
agagcggagagacattgtgctgatttccagctttgattcagaaaaatctt
ggctctcagagccctgagcatctgtagctccacacccacctgagctaatc
ttgaatcagctgctaagacacgtccaaggctttgaacattcacacagact
cactaaaatctccttgtgaggactctctcacccaccatctcttactaatg
taacatttaatagagactgctattgaactgctaaacctactccactcctg
ttatttatctaagcaggatgaaatatgccactatgaagtctaaatcatag
ggaaatttactctcattatatttaattgtattctcaaataattgatttgt
aatagccatcttcaaatggatattataagccattgtgaaattagcttagt
tatgatacaatattttccactgagtctgggtcctcacaacagaattccag
acttaccgatgattttagctgtgatatctgaaaactccatcatcacaaaa
tgctgtagattcctatattttcttcttggcaaagatcttacagatttaag
aagggctacccagagtcttagcaacatatttcttatgaagaagaggaagt
acaaactgcacagtgcagaacagagtgactatttctataaatgctgtatt
gacaattatgtaaagcatatatgcaaacacagccatgtcctttaattata
gtctatctcatctgctttgatcatggagcaaatgaaatcttcttcagtgc
agtcacagacttgaaagcagtttagaaagtatatcagtccttttgttcat
tatataaaaatcttgtcagaatcaagaacataaaggaaaagtgcaggaaa
ggagccaatggattttccatggataattggccttttcccttacagtgtta
gaagatga
gaattctttgctccgaccattactttgtattaggaattagttgcaactct
cattccttccttagccaatctaacttaatttcatttcgaagctgtagcac
agacatctctttcatcattcattcttcctacatctcttatttatggggaa
acttcttggctttgcactaaatttttacacttttgaaacgcagaaccttt
ttttatccctcagaaatcttagctttttgtactccaaagccttatctctc
aagacagtggctctgcaaggggtttgaaagttacaatttcaaagtaaact
ccaagactatgattctttgttttatgcattgggttcttgtccaagataat
aagtctcagcctcaaggtctgactttaatgggaaatgctgagggggtaat
gaggggtaaaaagagaatgaaaatctatccgttaatgctccaagatatta
tgtctctctatttctcctcctagtaaatcattgcatttggatacttcagt
gtagcttttctccccatagcacccccactggaaattatgcaaggcctttg
aaatgttcctatgagcttgtggagtctctgcctttagttttgtcatgatt
cagaagggactcatatttgcacagaatctgtgtgcctaaaataataactc
caatattcagaattcttaggattagttattagaatgagctgaaagaataa
aggtgagagctgtttagtcattgagactggcaaaaagcttctagttccaa
tgcagctaagggacagtcaggatgaacataaaattagcatgaaccatgtt
ttattatttcttttatttttgagattataattatatcattttcctcttct
cttttctccatccaagccctcccataaaccacctcatgctttccctataa
gtcatggcctctctattcattaattctattacatacatatattcacatgt
acatagatatatattcctaaatgtgtcatgcttactctataatgctactg
tatgtatagtttcaggcctgaccctttgatatgacggagccattggtggt
gtctgtccctgctgagactctttcttctttgctcaatgttctttagttgc
cttgtattcatagtggtaaggttaaggctcctggcctttctgcatccaaa
tggatgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_38641006_38642229
seq2: B6Ng01-103C04.b_43_1250 (reverse)

seq1  TCATCTTCTTTCACTGTGAGGGAAAAAAAGCAAATAACTCCATGGAAAAA  50
      |||||||||  |||||| ||||  |||| || ||| | ||||||||||| 
seq2  TCATCTTCTAACACTGTAAGGG--AAAAGGCCAATTA-TCCATGGAAAA-  46

seq1  TTCCACTATGCCTCTTTCTTTGCACTTTTTTCCTTTATGTTCTTTGATCT  100
       ||||   || ||| ||   |||||  ||||||||||||||| |||||  
seq2  -TCCA--TTGGCTCCTTTCCTGCAC--TTTTCCTTTATGTTC-TTGATTC  90

seq1  TGACAAGATATTTTATAT-ATG-ACAAAAGGACTTGATTAATACTATCTA  148
      ||||||||| |||||||| ||| |||||||||| ||||  ||||| ||||
seq2  TGACAAGAT-TTTTATATAATGAACAAAAGGAC-TGAT--ATACTTTCTA  136

seq1  AACTGCTTTCAAAGTCTTGTGACTGCAACTGAAG-AGATTTCATTTGCCT  197
      |||||||||| ||||| ||||||||| ||||||| |||||||||||| ||
seq2  AACTGCTTTC-AAGTC-TGTGACTGC-ACTGAAGAAGATTTCATTTG-CT  182

seq1  CCATGATCAAAGCAGATGAGATAGACTATAAATTAAAGGACATGGCTGTG  247
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCATGATCAAAGCAGATGAGATAGACTAT-AATTAAAGGACATGGCTGTG  231

seq1  TTTGCATATATGCTTTACATAATTGTCAATACAGCATTTATAAAAATAGT  297
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTGCATATATGCTTTACATAATTGTCAATACAGCATTTATAGAAATAGT  281

seq1  CACTCTGTTCTGCACTGTGCAGTTTGTACTTCCTCTTCTTCATAAGAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTTCTGCACTGTGCAGTTTGTACTTCCTCTTCTTCATAAGAAAT  331

seq1  ATGTTGCTAAGACTCTGGGTAGCCCTTCTTAAATCTGTAAGATCTTTGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTAAGACTCTGGGTAGCCCTTCTTAAATCTGTAAGATCTTTGCC  381

seq1  AAGAAGAAAATATAGGAATCTACAGCATTTTGTGATGATGGAGTTTTCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAATATAGGAATCTACAGCATTTTGTGATGATGGAGTTTTCAG  431

seq1  ATATCACAGCTAAAATCATCGGTAAGTCTGGAATTCTGTTGTGAGGACCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACAGCTAAAATCATCGGTAAGTCTGGAATTCTGTTGTGAGGACCC  481

seq1  AGACTCAGTGGAAAATATTGTATCATAACTAAGCTAATTTCACAATGGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGTGGAAAATATTGTATCATAACTAAGCTAATTTCACAATGGCT  531

seq1  TATAATATCCATTTGAAGATGGCTATTACAAATCAATTATTTGAGAATAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATCCATTTGAAGATGGCTATTACAAATCAATTATTTGAGAATAC  581

seq1  AATTAAATATAATGAGAGTAAATTTCCCTATGATTTAGACTTCATAGTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATATAATGAGAGTAAATTTCCCTATGATTTAGACTTCATAGTGG  631

seq1  CATATTTCATCCTGCTTAGATAAATAACAGGAGTGGAGTAGGTTTAGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCATCCTGCTTAGATAAATAACAGGAGTGGAGTAGGTTTAGCAG  681

seq1  TTCAATAGCAGTCTCTATTAAATGTTACATTAGTAAGAGATGGTGGGTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAGCAGTCTCTATTAAATGTTACATTAGTAAGAGATGGTGGGTGA  731

seq1  GAGAGTCCTCACAAGGAGATTTTAGTGAGTCTGTGTGAATGTTCAAAGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCCTCACAAGGAGATTTTAGTGAGTCTGTGTGAATGTTCAAAGCC  781

seq1  TTGGACGTGTCTTAGCAGCTGATTCAAGATTAGCTCAGGTGGGTGTGGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACGTGTCTTAGCAGCTGATTCAAGATTAGCTCAGGTGGGTGTGGAG  831

seq1  CTACAGATGCTCAGGGCTCTGAGAGCCAAGATTTTTCTGAATCAAAGCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATGCTCAGGGCTCTGAGAGCCAAGATTTTTCTGAATCAAAGCTG  881

seq1  GAAATCAGCACAATGTCTCTCCGCTCTTTACATGTTCTGCAAAGAGAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGCACAATGTCTCTCCGCTCTTTACATGTTCTGCAAAGAGAAGA  931

seq1  AATGTGCAGATCTATTCTGGTCACTCAGACTCATTGAATATTTATGGAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCAGATCTATTCTGGTCACTCAGACTCATTGAATATTTATGGAAG  981

seq1  TTCTGAAGCAAGTGAAATATTCCCAGATATCTCTCGAAGCTGAACCAGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGCAAGTGAAATATTCCCAGATATCTCTCGAAGCTGAACCAGGC  1031

seq1  AGCTTGGAAATAGATAACTGGCAGGACTGGGTTTGTCTGTGTAGGGCAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGAAATAGATAACTGGCAGGACTGGGTTTGTCTGTGTAGGGCAGC  1081

seq1  ATATATTTACGTATGATCTCAGCCAAAAGGCCAAGAAGTGATGGCAGCAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTACGTATGATCTCAGCCAAAAGGCCAAGAAGTGATGGCAGCAT  1131

seq1  ATATTTAAAAAAAGAAATTACTCAAGGATCATCAGGTGTACTGTGATTTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAAAAAAGAAATTACTCAAGGATCATCAGGTGTACTGTGATTTT  1181

seq1  GTGATTTCCTATAAAATTACTGAATTC  1224
      |||||||||||||||||||||||||||
seq2  GTGATTTCCTATAAAATTACTGAATTC  1208

seq1: chrX_38700140_38701304
seq2: B6Ng01-103C04.g_68_1226 (reverse)

seq1  AGGCATCCAATGTGGATGCAGGAAAAGCCAAGAGACCTTAACCCTA-CAC  49
      |||||||| || |||||||| |||| |||| ||| |||||||| || |||
seq2  AGGCATCC-ATTTGGATGCA-GAAAGGCCAGGAG-CCTTAACCTTACCAC  47

seq1  AATGAATTACAGGCAACTAAAGAACACTGAGCAAAGAAGAAAGAGTCTTC  99
       ||||||   |||||||||||||||| |||||||||||||||||||| ||
seq2  TATGAATACAAGGCAACTAAAGAACATTGAGCAAAGAAGAAAGAGTC-TC  96

seq1  AGCAGGGACAGACA-CACCAATGGCTCGTTCAATATCAAAGGGTCAGGCC  148
      |||||||||||||| ||||||||||||  || ||||||||||||||||||
seq2  AGCAGGGACAGACACCACCAATGGCTCCGTC-ATATCAAAGGGTCAGGCC  145

seq1  TGAAACTATACATACAAGTAGCATTAATAGAGTAAGCATGACACATTTAG  198
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  TGAAACTATACATAC-AGTAGCATT-ATAGAGTAAGCATGACACATTTAG  193

seq1  GAATATATATCTATGTACATGTGAATATATGTATGTAATAAGAATTAATG  248
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAATATATATCTATGTACATGTGAATATATGTATGTAAT-AGAATTAATG  242

seq1  AATAGAGAGGCCATGACTTATAGGGAAAGCATGAGGTGGTTTATGGGAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAGGCCATGACTTATAGGGAAAGCATGAGGTGGTTTATGGGAGG  292

seq1  GCTTGGATGGAGAAAAGAGAAGAGGAAAATGATATAATTATAATCTCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGATGGAGAAAAGAGAAGAGGAAAATGATATAATTATAATCTCAAA  342

seq1  AATAAAAGAAATAATAAAACATGGTTCATGCTAATTTTATGTTCATCCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGAAATAATAAAACATGGTTCATGCTAATTTTATGTTCATCCTG  392

seq1  ACTGTCCCTTAGCTGCATTGGAACTAGAAGCTTTTTGCCAGTCTCAATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCTTAGCTGCATTGGAACTAGAAGCTTTTTGCCAGTCTCAATGA  442

seq1  CTAAACAGCTCTCACCTTTATTCTTTCAGCTCATTCTAATAACTAATCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGCTCTCACCTTTATTCTTTCAGCTCATTCTAATAACTAATCCT  492

seq1  AAGAATTCTGAATATTGGAGTTATTATTTTAGGCACACAGATTCTGTGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCTGAATATTGGAGTTATTATTTTAGGCACACAGATTCTGTGCA  542

seq1  AATATGAGTCCCTTCTGAATCATGACAAAACTAAAGGCAGAGACTCCACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGTCCCTTCTGAATCATGACAAAACTAAAGGCAGAGACTCCACA  592

seq1  AGCTCATAGGAACATTTCAAAGGCCTTGCATAATTTCCAGTGGGGGTGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATAGGAACATTTCAAAGGCCTTGCATAATTTCCAGTGGGGGTGCT  642

seq1  ATGGGGAGAAAAGCTACACTGAAGTATCCAAATGCAATGATTTACTAGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAGAAAAGCTACACTGAAGTATCCAAATGCAATGATTTACTAGGA  692

seq1  GGAGAAATAGAGAGACATAATATCTTGGAGCATTAACGGATAGATTTTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATAGAGAGACATAATATCTTGGAGCATTAACGGATAGATTTTCA  742

seq1  TTCTCTTTTTACCCCTCATTACCCCCTCAGCATTTCCCATTAAAGTCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTTTACCCCTCATTACCCCCTCAGCATTTCCCATTAAAGTCAGA  792

seq1  CCTTGAGGCTGAGACTTATTATCTTGGACAAGAACCCAATGCATAAAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGCTGAGACTTATTATCTTGGACAAGAACCCAATGCATAAAACA  842

seq1  AAGAATCATAGTCTTGGAGTTTACTTTGAAATTGTAACTTTCAAACCCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCATAGTCTTGGAGTTTACTTTGAAATTGTAACTTTCAAACCCCT  892

seq1  TGCAGAGCCACTGTCTTGAGAGATAAGGCTTTGGAGTACAAAAAGCTAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCCACTGTCTTGAGAGATAAGGCTTTGGAGTACAAAAAGCTAAG  942

seq1  ATTTCTGAGGGATAAAAAAAGGTTCTGCGTTTCAAAAGTGTAAAAATTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGGGATAAAAAAAGGTTCTGCGTTTCAAAAGTGTAAAAATTTA  992

seq1  GTGCAAAGCCAAGAAGTTTCCCCATAAATAAGAGATGTAGGAAGAATGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAGCCAAGAAGTTTCCCCATAAATAAGAGATGTAGGAAGAATGAA  1042

seq1  TGATGAAAGAGATGTCTGTGCTACAGCTTCGAAATGAAATTAAGTTAGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAAGAGATGTCTGTGCTACAGCTTCGAAATGAAATTAAGTTAGAT  1092

seq1  TGGCTAAGGAAGGAATGAGAGTTGCAACTAATTCCTAATACAAAGTAATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAGGAAGGAATGAGAGTTGCAACTAATTCCTAATACAAAGTAATG  1142

seq1  GTCGGAGCAAAGAATTC  1165
      |||||||||||||||||
seq2  GTCGGAGCAAAGAATTC  1159