BAC Information

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BAC

Clone NameB6Ng01-104L24
ChromosomeX (Build37)
Map Location 147,871,986 - 148,004,857
singlet/doubletdoublet
Overlap geneORF34, LOC100039760, Phf8
Upstream geneTmem29, LOC100040101, Alas2, Apex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278, LOC623804
Downstream geneLOC385448, LOC237116, Huwe1, LOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412, LOC635396, EG667130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104L24.bB6Ng01-104L24.g
ACCDH912956DH912957
length1,2131,134
definitionDH912956|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L24, 5' end.DH912957|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,871,986 - 147,873,203)(148,003,693 - 148,004,857)
sequence
gaattcaaacagggcaggaacctgatgcagaggcaatggaggagggaatg
ctgcttactggctcactccccatagctttctcagtctgctttcttataga
acccaggaccaccagcccagggatggcaccacccacaataagctgggcat
tcccccattgaccactaattaataaaatgccttatgaaggcatttccttg
actgaggttccctcctttcagataactctagcttgtgtcaagtcgacata
aagatagctaggacaaatggattcttgctatgttcctaagcttgtctgaa
cttctgtgctcaaaccatcctctctactaagcatccctagaggattagac
tgtaggcatagatgcttacatccattctgctgtttttaatctacctacat
tcatatatgttcttcttgattgttgggttatatttcaactattatactat
tatcacagtattttactgattaattgatggatatttcttcccagttgtgt
tcaaaaatatttttttaaaaacctgtgtttattgattttatgtatatagg
ttatttggttgcatgtatgtctgtgcaccatgtatatacagtgttcacaa
aggtcagaaaaggctgtcagattctcaaaaaatggcattagagatgcttg
tgagcctccatgtgggtgccatgaatcaaactactgagctatctgtacag
tttccaggaaatattttcatgaaatgtttacttagtgttccttttccatt
gtatctggagtaaatgcccaggaatagaacttgtggttccaacaagccag
tggctctcaaccttcctaaccccacaaccctttaatacagttccttaggt
tgcaatgacacccacccataaaattatttccattgctattttataactgc
tactgctatgaatcataatgcaaacatttttggagaagatatttgccaaa
ggggtcacacacaacccataagttgagacccctgctataaaatatacctg
taaaattttactaatattgccaaatgatatagatttagcttgctaattta
tatacctaagaaatatttccaagtacatgaatatcctaagtacaggtact
aaatgtcatacatcgaatctcgtgaattttacaccaatatcttgacattt
ttttcttaactactggatagagaaggcctttgctttttttggtctcccct
gtcccggcccttt
gaattcttgcaaacatgccaagggcaagcaatgaaggaaggacaatcttt
tcaataactgataaggaaccaattagataccagatatccataggtcaaac
aaaaccaaaaacttttaatacattttttgaaataacaaagaggattacag
acttaaatatagaacttaaaaatataagccctatataaccaaggagaaca
tttttgtaaacttttgctaagcaactatttcttaagtcactaatagcatg
gactacaaaagaaaaactgataaaaatggactggcccaatatgtggaatg
gtctcagaacatgtaattatttgaatgaatgactctatgaatgaataagg
aaggcccttgatagagtcttcccattcctcccctagttatccaaataaag
ttgggtaactttgatggttcctgcccttctaggctaggagggcatgcaaa
tcatctatacttcaaagaagtcttcttccatgagcttgtgccccctttaa
aggcgctccgctctcctctagctccctttggccatgctattcctgggttt
ctggctccatattgactcaggatatgagtgcttacgaactacacactcac
tttcttttggtgttcctggaagagtcagtctgaagtatacttcatagtaa
ggatcagcaataacactgaagttagcgaggatggaggaagatgaaaaaac
agaactacaggctaaaggccaggtgtttgtgagattagggaacaaaggaa
atcccaaaacatgaagttttacaatattaggggaatgttggcaacacaaa
atgaagagattgatgcataagttaaaccactacaaggtctgaaactatcc
ctttaggtgattatacggaaggaaggaaactagagagaatctgaaacctg
agactgtcttaatatttattctacttttgcattcttgattttttaagtct
tcgaaacaattttcatatagtatattttgatcatgtatctccctccctcc
agagcctacacaccaactgttctatttctctctttaaacaacaaataaga
accagaacacacacactacaaccccgaggtgaatcactgaactcctaccc
tagccattagttatctgcatgatactcgtgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_147871986_147873203
seq2: B6Ng01-104L24.b_45_1257

seq1  GAATTCAAACAGGGCAGGAACCTGATGCAGAGGCAATGGAGGAGGGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGGGCAGGAACCTGATGCAGAGGCAATGGAGGAGGGAATG  50

seq1  CTGCTTACTGGCTCACTCCCCATAGCTTTCTCAGTCTGCTTTCTTATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACTGGCTCACTCCCCATAGCTTTCTCAGTCTGCTTTCTTATAGA  100

seq1  ACCCAGGACCACCAGCCCAGGGATGGCACCACCCACAATAAGCTGGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGACCACCAGCCCAGGGATGGCACCACCCACAATAAGCTGGGCAT  150

seq1  TCCCCCATTGACCACTAATTAATAAAATGCCTTATGAAGGCATTTCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATTGACCACTAATTAATAAAATGCCTTATGAAGGCATTTCCTTG  200

seq1  ACTGAGGTTCCCTCCTTTCAGATAACTCTAGCTTGTGTCAAGTCGACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTTCCCTCCTTTCAGATAACTCTAGCTTGTGTCAAGTCGACATA  250

seq1  AAGATAGCTAGGACAAATGGATTCTTGCTATGTTCCTAAGCTTGTCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCTAGGACAAATGGATTCTTGCTATGTTCCTAAGCTTGTCTGAA  300

seq1  CTTCTGTGCTCAAACCATCCTCTCTACTAAGCATCCCTAGAGGATTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGCTCAAACCATCCTCTCTACTAAGCATCCCTAGAGGATTAGAC  350

seq1  TGTAGGCATAGATGCTTACATCCATTCTGCTGTTTTTAATCTACCTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCATAGATGCTTACATCCATTCTGCTGTTTTTAATCTACCTACAT  400

seq1  TCATATATGTTCTTCTTGATTGTTGGGTTATATTTCAACTATTATACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATGTTCTTCTTGATTGTTGGGTTATATTTCAACTATTATACTAT  450

seq1  TATCACAGTATTTTACTGATTAATTGATGGATATTTCTTCCCAGTTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGTATTTTACTGATTAATTGATGGATATTTCTTCCCAGTTGTGT  500

seq1  TCAAAAATATTTTTTTAAAAACCTGTGTTTATTGATTTTATGTATATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATATTTTTTTAAAAACCTGTGTTTATTGATTTTATGTATATAGG  550

seq1  TTATTTGGTTGCATGTATGTCTGTGCACCATGTATATACAGTGTTCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGTTGCATGTATGTCTGTGCACCATGTATATACAGTGTTCACAA  600

seq1  AGGTCAGAAAAGGCTGTCAGATTCTCAAAAAATGGCATTAGAGATGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGAAAAGGCTGTCAGATTCTCAAAAAATGGCATTAGAGATGCTTG  650

seq1  TGAGCCTCCATGTGGGTGCCATGAATCAAACTACTGAGCTATCTGTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTCCATGTGGGTGCCATGAATCAAACTACTGAGCTATCTGTACAG  700

seq1  TTTCCAGGAAATATTTTCATGAAATGTTTACTTAGTGTTCCTTTTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGAAATATTTTCATGAAATGTTTACTTAGTGTTCCTTTTCCATT  750

seq1  GTATCTGGAGTAAATGCCCAGGAATAGAACTTGTGGTTCCAACAAGCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGGAGTAAATGCCCAGGAATAGAACTTGTGGTTCCAACAAGCCAG  800

seq1  TGGCTCTCAACCTTCCTAACCCCACAACCCTTTAATACAGTTCCTTAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCAACCTTCCTAACCCCACAACCCTTTAATACAGTTCCTTAGGT  850

seq1  TGCAATGACACCCACCCATAAAATTATTTCCATTGCTATTTTATAACTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGACACCCACCCATAAAATTATTTCCATTGCTATTTTATAACTGC  900

seq1  TACTGCTATGAATCATAATGCAAACATTTTTGGAGAAAGATATTTGCCAA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TACTGCTATGAATCATAATGCAAACATTTTTGGAG-AAGATATTTGCCAA  949

seq1  AGGGGTCACACACAACCCATAAGTTGAGAACCCCTGCTATAAAATATACC  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGGGGTCACACACAACCCATAAGTTGAG-ACCCCTGCTATAAAATATACC  998

seq1  TGTAAAAATTTTACTAAATATTGCCAAATGATAATAGATTTTAGCCTTGC  1050
      ||| ||||||||||| |||||||||||||||| ||||| ||||| |||||
seq2  TGT-AAAATTTTACT-AATATTGCCAAATGAT-ATAGA-TTTAG-CTTGC  1043

seq1  TAATTTATATACCTA--GAATATTTCCAAGTACATGATATTCCTAAGTAC  1098
      |||||||||||||||   |||||||||||||||||||   ||||||||||
seq2  TAATTTATATACCTAAGAAATATTTCCAAGTACATGAATATCCTAAGTAC  1093

seq1  A-GTACTAATTGTCATACAATCAAAATCTCGTAGATTTTACA-CAATATC  1146
      | ||||||| |||||||| |||  ||||||||  |||||||| |||||||
seq2  AGGTACTAAATGTCATAC-ATC-GAATCTCGTGAATTTTACACCAATATC  1141

seq1  TTGACATTTGTTTTTCTTTAACTACT-GATGAGGATGGCCTTTGCTTTTT  1195
      ||||||||  |||||| ||||||||| |||   || ||||||||||||||
seq2  TTGACATT--TTTTTC-TTAACTACTGGATAGAGAAGGCCTTTGCTTTTT  1188

seq1  TT-GTCTCCCC-CTGCCCGCCCTTT  1218
      || ||||||||  | || |||||||
seq2  TTGGTCTCCCCTGTCCCGGCCCTTT  1213

seq1: chrX_148003693_148004857
seq2: B6Ng01-104L24.g_67_1200 (reverse)

seq1  TTGTCAGCAGGTATCAATTGCAGATAACTTATATTGGCTAGGGGTAGGAG  50
      |||||| |  ||||||  ||||||||||   || |||||| |||||||||
seq2  TTGTCA-CGAGTATCA--TGCAGATAAC---TAATGGCTA-GGGTAGGAG  43

seq1  TTCATGTTGATTTCCACCCCTTTGTGTGTTTGTATGTGTGTGTGTTTCTG  100
      ||||   |||||  |||| |     | | ||||| ||||||||||   | 
seq2  TTCA--GTGATT--CACCTC-----GGGGTTGTA-GTGTGTGTGT---TC  80

seq1  TGTTTCTTATTTTTGTTTGTTTTAAAGAGAGAAATAGAACAAGTTGGGTG  150
      || ||||||  ||||||   |||||||||||||||||||| |||| ||||
seq2  TGGTTCTTA--TTTGTT--GTTTAAAGAGAGAAATAGAAC-AGTT-GGTG  124

seq1  TGTAGGCTCTGGGAGGGAGGGAGATACATGATCAAAATATACTATATGAA  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTCT-GGAGGGAGGGAGATACATGATCAAAATATACTATATGAA  173

seq1  AATTGTTTTCGAAGACTTAAAAAAATCAAAGAAATGCAAAAGTAGAATAA  250
      ||||| |||||||||||| ||||||||||   ||||||||||||||||||
seq2  AATTG-TTTCGAAGACTT-AAAAAATCAA--GAATGCAAAAGTAGAATAA  219

seq1  ATATTAAGACAGTCTCAGGTTTCAGATTCTCTCTAGTTTCCTTCCTTCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGACAGTCTCAGGTTTCAGATTCTCTCTAGTTTCCTTCCTTCCG  269

seq1  TATAATCACCTAAAGGGATAGTTTCAGACCTTGTAGTGGTTTAACTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCACCTAAAGGGATAGTTTCAGACCTTGTAGTGGTTTAACTTATG  319

seq1  CATCAATCTCTTCATTTTGTGTTGCCAACATTCCCCTAATATTGTAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCTCTTCATTTTGTGTTGCCAACATTCCCCTAATATTGTAAAAC  369

seq1  TTCATGTTTTGGGATTTCCTTTGTTCCCTAATCTCACAAACACCTGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTTTGGGATTTCCTTTGTTCCCTAATCTCACAAACACCTGGCCT  419

seq1  TTAGCCTGTAGTTCTGTTTTTTCATCTTCCTCCATCCTCGCTAACTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTGTAGTTCTGTTTTTTCATCTTCCTCCATCCTCGCTAACTTCAG  469

seq1  TGTTATTGCTGATCCTTACTATGAAGTATACTTCAGACTGACTCTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGCTGATCCTTACTATGAAGTATACTTCAGACTGACTCTTCCAG  519

seq1  GAACACCAAAAGAAAGTGAGTGTGTAGTTCGTAAGCACTCATATCCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCAAAAGAAAGTGAGTGTGTAGTTCGTAAGCACTCATATCCTGAG  569

seq1  TCAATATGGAGCCAGAAACCCAGGAATAGCATGGCCAAAGGGAGCTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGGAGCCAGAAACCCAGGAATAGCATGGCCAAAGGGAGCTAGAG  619

seq1  GAGAGCGGAGCGCCTTTAAAGGGGGCACAAGCTCATGGAAGAAGACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCGGAGCGCCTTTAAAGGGGGCACAAGCTCATGGAAGAAGACTTCT  669

seq1  TTGAAGTATAGATGATTTGCATGCCCTCCTAGCCTAGAAGGGCAGGAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTATAGATGATTTGCATGCCCTCCTAGCCTAGAAGGGCAGGAACC  719

seq1  ATCAAAGTTACCCAACTTTATTTGGATAACTAGGGGAGGAATGGGAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTTACCCAACTTTATTTGGATAACTAGGGGAGGAATGGGAAGAC  769

seq1  TCTATCAAGGGCCTTCCTTATTCATTCATAGAGTCATTCATTCAAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAAGGGCCTTCCTTATTCATTCATAGAGTCATTCATTCAAATAAT  819

seq1  TACATGTTCTGAGACCATTCCACATATTGGGCCAGTCCATTTTTATCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTCTGAGACCATTCCACATATTGGGCCAGTCCATTTTTATCAGT  869

seq1  TTTTCTTTTGTAGTCCATGCTATTAGTGACTTAAGAAATAGTTGCTTAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTGTAGTCCATGCTATTAGTGACTTAAGAAATAGTTGCTTAGC  919

seq1  AAAAGTTTACAAAAATGTTCTCCTTGGTTATATAGGGCTTATATTTTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTACAAAAATGTTCTCCTTGGTTATATAGGGCTTATATTTTTAA  969

seq1  GTTCTATATTTAAGTCTGTAATCCTCTTTGTTATTTCAAAAAATGTATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATTTAAGTCTGTAATCCTCTTTGTTATTTCAAAAAATGTATTA  1019

seq1  AAAGTTTTTGGTTTTGTTTGACCTATGGATATCTGGTATCTAATTGGTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTTGGTTTTGTTTGACCTATGGATATCTGGTATCTAATTGGTTC  1069

seq1  CTTATCAGTTATTGAAAAGATTGTCCTTCCTTCATTGCTTGCCCTTGGCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAGTTATTGAAAAGATTGTCCTTCCTTCATTGCTTGCCCTTGGCA  1119

seq1  TGTTTGCAAGAATTC  1165
      |||||||||||||||
seq2  TGTTTGCAAGAATTC  1134