BAC Information

Click to search

BAC

Clone NameB6Ng01-106P12
ChromosomeX (Build37)
Map Location 70,443,273 - 70,593,908
singlet/doubletdoublet
Overlap geneEG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275
Upstream geneMagea4, Gabre, Magea10, Gabra3, Gabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik
Downstream geneGm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106P12.bB6Ng01-106P12.g
ACCDH914561DH914562
length8001,174
definitionDH914561|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P12, 5' end.DH914562|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,443,273 - 70,444,068)(70,592,712 - 70,593,908)
sequence
gaattctctgatggttgtgggtgtgcatcctcattggacctatctttata
atgggaaaattaagcaggggttgtgctcgtcagagagactaatacttgtg
gaatgctactaagacaatcctgagttttctagcactaagagctgtgaagt
gactcctgtctcggccaaggaggaacacatgctattagcctggtaggaac
taatccacctcattttccatttccctgtcagaatattttagatctccttt
cccagtcttgcatttagtgaaggaaagtcagtcgtgctgtgtttgaatgg
gctttcttcatgtcgagaaggaatatcacagtgttcacgttgtcttttac
aggcagaaactttgtcaggactattctcttcagtttacaaatttgaatag
gaagttaacttcggatgcatacaaactcaagaaacatgccgaaacactct
ctgtgagtatcaggcttagatttaaaggaatccatttcctcagcatcaga
ggtagcaacacaggcttcctgcagcaggtctggagggaagggacaggaca
tgagctctgggagacaaggagggtggttgatgtggaggggagagactggt
catcctccctgacttggttttttatcccccttctgtgggaagatgacaag
ggtaatgatgggttaggagtctgcatggtacaggcctgggggggatgagc
aggtactgtctgcagagtgcaggaggaggtattgggattgtattcctgag
gggggacccttcaggatcgacacattgcaaatgccaaagagtaggagggg

gaattctttacagaagaaacaggtagggatgacatttggttgaaaattca
aagaggagaataagagaggagaaaaaacaatacacatattcgtagaaata
aggaaaatactgagagtgaccagtagctagaataagcacattgattcaat
gcttgtatacagggagacacaaggagagagacaagatctggaaagatcta
tttttttaaattggtttttagacaccaaggtgaatttcactagtttaaaa
aaaataccaattttagataactttggtaggcaaacctgggataagacaga
tgcttagcatgcaagagaatggggctgagaccagggaaatggcaggagaa
tggctcttgaggtcagctaaaatgaccagtatttcttgtcatacccatat
ggggaaatgagaaaggaccaatgggaatctataggcagtatgtgaagagg
ggtgaccagatagtctaagtacagatttcttgaaggtgtatggacagaag
gtctaactaatgtgatcctaaagtcctggaaagacctcctacccattttt
ttgctgattgtttagcaaaagggattctccaaatgtgtgaagtcatcctc
agttattcagtggacaaagcagagttcctctggcttaatgctttctgcta
ggcattcaatgtctagtttgattttggcttcctatacaaacacaatgaac
tggtcataaacttattacatgattttgttttgaaaacaattcacttccaa
ttgacattgatgttaccaaatgaaatacatggaagagggtcatcatagca
catatgcacttctggaaaaagatggtctattataaaccttttcttgccta
gcacacaattgcctagcctaccattcagacactgaccttcatgcagatat
aagatgccaaggctatggccctcaagcccgtggacctgcggagacaccat
ttcttatcacagagctttcttctagaattcaggccttaactcaaatgtca
cttccttagaacctctttattctctagccctgcagttatttcaaacattt
tcacacgaaaatctcctttgagctgcttttcttcgaaaaaaaattctgaa
tcaatagaaggaccttctctccattgttatcctaaatcatgggtatgtag
cagatcctggcaatgtagatgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_70443273_70444068
seq2: B6Ng01-106P12.b_47_845

seq1  GAATTCTCTGATGGTTGTGGGTGTGCATCCTCATTGGACCTATCTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATGGTTGTGGGTGTGCATCCTCATTGGACCTATCTTTATA  50

seq1  ATGGGAAAATTAAGCAGGGGTTGTGCTCGTCAGAGAGACTAATACTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAATTAAGCAGGGGTTGTGCTCGTCAGAGAGACTAATACTTGTG  100

seq1  GAATGCTACTAAGACAATCCTGAGTTTTCTAGCACTAAGAGCTGTGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTACTAAGACAATCCTGAGTTTTCTAGCACTAAGAGCTGTGAAGT  150

seq1  GACTCCTGTCTCGGCCAAGGAGGAACACATGCTATTAGCCTGGTAGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGTCTCGGCCAAGGAGGAACACATGCTATTAGCCTGGTAGGAAC  200

seq1  TAATCCACCTCATTTTCCATTTCCCTGTCAGAATATTTTAGATCTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCACCTCATTTTCCATTTCCCTGTCAGAATATTTTAGATCTCCTTT  250

seq1  CCCAGTCTTGCATTTAGTGAAGGAAAGTCAGTCGTGCTGTGTTTGAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTTGCATTTAGTGAAGGAAAGTCAGTCGTGCTGTGTTTGAATGG  300

seq1  GCTTTCTTCATGTCGAGAAGGAATATCACAGTGTTCACGTTGTCTTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTCATGTCGAGAAGGAATATCACAGTGTTCACGTTGTCTTTTAC  350

seq1  AGGCAGAAACTTTGTCAGGACTATTCTCTTCAGTTTACAAATTTGAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAACTTTGTCAGGACTATTCTCTTCAGTTTACAAATTTGAATAG  400

seq1  GAAGTTAACTTCGGATGCATACAAACTCAAGAAACATGCCGAAACACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAACTTCGGATGCATACAAACTCAAGAAACATGCCGAAACACTCT  450

seq1  CTGTGAGTATCAGGCTTAGATTTAAAGGAATCCATTTCCTCAGCATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTATCAGGCTTAGATTTAAAGGAATCCATTTCCTCAGCATCAGA  500

seq1  GGTAGCAACACAGGCTTCCTGCAGCAGGTCTGGAGGGAAGGGACAGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAACACAGGCTTCCTGCAGCAGGTCTGGAGGGAAGGGACAGGACA  550

seq1  TGAGCTCTGGGAGACAAGGAGGGTGGTTGATGTGGAGGGGAGAGACTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTGGGAGACAAGGAGGGTGGTTGATGTGGAGGGGAGAGACTGGT  600

seq1  CATCCTCCCTGACTTGGTTTTTTATCCCCCTTCTGTGGGAAGATGACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCCTGACTTGGTTTTTTATCCCCCTTCTGTGGGAAGATGACAAG  650

seq1  GGTAATGATGGGTTAGGAGTCTGCATGGTACAGGCCT-GGGGGGATGAGC  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGTAATGATGGGTTAGGAGTCTGCATGGTACAGGCCTGGGGGGGATGAGC  700

seq1  AGGTACTGTCTGCAGAGTGCAGGAGGAGGTA-TGGGATTGTA-TCCTGAG  747
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  AGGTACTGTCTGCAGAGTGCAGGAGGAGGTATTGGGATTGTATTCCTGAG  750

seq1  GGGGGACCCTTCAGGATCGACACAGTGCAGATGCCAAAGAGTAGGAGGG  796
      |||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  GGGGGACCCTTCAGGATCGACACATTGCAAATGCCAAAGAGTAGGAGGG  799

seq1: chrX_70592712_70593908
seq2: B6Ng01-106P12.g_68_1241 (reverse)

seq1  TATCATGTCCTACATGGTGCCAGTATCTGCTACATACACCATGAATTTAG  50
      ||||||   ||||||  |||||| ||||||||||||| ||||| ||||||
seq2  TATCAT---CTACAT--TGCCAGGATCTGCTACATAC-CCATG-ATTTAG  43

seq1  GAGTAACCAATGGAGAGAAGGTCCTGTCCTATTGGATCAGATTTTTTTTT  100
      || ||| |||||||||||||||||  | ||||||  |||||  |||||||
seq2  GA-TAA-CAATGGAGAGAAGGTCC--TTCTATTGATTCAGA-ATTTTTTT  88

seq1  TCTGAGAAAAGCAGCTTCAAAAGAGAATTTTTCGTTGTGAAAATGTTTGG  150
      ||  ||||||||||| ||||| ||||  |||||| ||||||||||||| |
seq2  TCGAAGAAAAGCAGC-TCAAAGGAGA--TTTTCG-TGTGAAAATGTTT-G  133

seq1  AAATAAACTGCCAGGGCTAGAGAATAAAGAGGTTCTAAGGAAGTGACATT  200
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAT-AACTG-CAGGGCTAGAGAATAAAGAGGTTCTAAGGAAGTGACATT  181

seq1  TGAGTTAAGGCCTGAATTCTTAGAAGAAAGCTCTTGTGATAAGAAATGGT  250
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  TGAGTTAAGGCCTGAATTC-TAGAAGAAAGCTC-TGTGATAAGAAATGGT  229

seq1  GTTCTCCGCAGGTCCACGGGCTTTGAGGGCCATAGCCTTGGCATCTTATA  300
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  G-TCTCCGCAGGTCCACGGGC-TTGAGGGCCATAGCCTTGGCATCTTATA  277

seq1  TCTGCATGAAGGTCAGTGTCTGAATGGTAGGCTAGGCAATTGTGTGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGAAGGTCAGTGTCTGAATGGTAGGCTAGGCAATTGTGTGCTAG  327

seq1  GCAAGAAAAGGTTTATAATAGACCATCTTTTTCCAGAAGTGCATATGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAAAGGTTTATAATAGACCATCTTTTTCCAGAAGTGCATATGTGC  377

seq1  TATGATGACCCTCTTCCATGTATTTCATTTGGTAACATCAATGTCAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGACCCTCTTCCATGTATTTCATTTGGTAACATCAATGTCAATTG  427

seq1  GAAGTGAATTGTTTTCAAAACAAAATCATGTAATAAGTTTATGACCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAATTGTTTTCAAAACAAAATCATGTAATAAGTTTATGACCAGTT  477

seq1  CATTGTGTTTGTATAGGAAGCCAAAATCAAACTAGACATTGAATGCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTTTGTATAGGAAGCCAAAATCAAACTAGACATTGAATGCCTAG  527

seq1  CAGAAAGCATTAAGCCAGAGGAACTCTGCTTTGTCCACTGAATAACTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCATTAAGCCAGAGGAACTCTGCTTTGTCCACTGAATAACTGAG  577

seq1  GATGACTTCACACATTTGGAGAATCCCTTTTGCTAAACAATCAGCAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTTCACACATTTGGAGAATCCCTTTTGCTAAACAATCAGCAAAAA  627

seq1  AATGGGTAGGAGGTCTTTCCAGGACTTTAGGATCACATTAGTTAGACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTAGGAGGTCTTTCCAGGACTTTAGGATCACATTAGTTAGACCTT  677

seq1  CTGTCCATACACCTTCAAGAAATCTGTACTTAGACTATCTGGTCACCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATACACCTTCAAGAAATCTGTACTTAGACTATCTGGTCACCCCT  727

seq1  CTTCACATACTGCCTATAGATTCCCATTGGTCCTTTCTCATTTCCCCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATACTGCCTATAGATTCCCATTGGTCCTTTCTCATTTCCCCATA  777

seq1  TGGGTATGACAAGAAATACTGGTCATTTTAGCTGACCTCAAGAGCCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGACAAGAAATACTGGTCATTTTAGCTGACCTCAAGAGCCATTC  827

seq1  TCCTGCCATTTCCCTGGTCTCAGCCCCATTCTCTTGCATGCTAAGCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCATTTCCCTGGTCTCAGCCCCATTCTCTTGCATGCTAAGCATCT  877

seq1  GTCTTATCCCAGGTTTGCCTACCAAAGTTATCTAAAATTGGTATTTTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATCCCAGGTTTGCCTACCAAAGTTATCTAAAATTGGTATTTTTTT  927

seq1  TAAACTAGTGAAATTCACCTTGGTGTCTAAAAACCAATTTAAAAAAATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGTGAAATTCACCTTGGTGTCTAAAAACCAATTTAAAAAAATAG  977

seq1  ATCTTTCCAGATCTTGTCTCTCTCCTTGTGTCTCCCTGTATACAAGCATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCAGATCTTGTCTCTCTCCTTGTGTCTCCCTGTATACAAGCATT  1027

seq1  GAATCAATGTGCTTATTCTAGCTACTGGTCACTCTCAGTATTTTCCTTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAATGTGCTTATTCTAGCTACTGGTCACTCTCAGTATTTTCCTTAT  1077

seq1  TTCTACGAATATGTGTATTGTTTTTTCTCCTCTCTTATTCTCCTCTTTGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACGAATATGTGTATTGTTTTTTCTCCTCTCTTATTCTCCTCTTTGA  1127

seq1  ATTTTCAACCAAATGTCATCCCTACCTGTTTCTTCTGTAAAGAATTC  1197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAACCAAATGTCATCCCTACCTGTTTCTTCTGTAAAGAATTC  1174