BAC Information

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BAC

Clone NameB6Ng01-107A14
ChromosomeX (Build37)8 (Build37)
Map Location 165,438,150 - 165,439,2759,554,669 - 9,555,233
singlet/doubletsingletsinglet
Overlap geneArhgap6
Upstream geneFrmpd4, EG667822, EG637566, Msl31
Downstream geneAmelx, Hccs, LOC100040950, BC022960, Mid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107A14.bB6Ng01-107A14.g
ACCDH914613DH914614
length1,107860
definitionDH914613|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A14, 5' end.DH914614|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(165,438,150 - 165,439,275)(9,554,669 - 9,555,233)
sequence
gaattctacatagtcttagtgggaatgaagcattctattaccactagtat
ggaggcttctcagaaaactaaaactaggtaggaagtagagcaaaatcctg
tcacttattgggaaatagaaggaactgaagataaccattttaaggaaaat
atgtcatatataggaagaaaaatgtcatttttcttttttatggagaatct
agatttaaatataaaaatatattacatgaaaatagaagggggaatctgaa
ggaagaggtcaaatggaggtgacagaggataattggaagaagaagacaaa
atacaaagttttgtcccatttttagaatttaaatgatttatacaagcatg
catgagtgtacacatatatgtgacatgaaatcagaagggaaatgatttat
tgaagagagtggagaccagtgaggtgagattggagagtgtacaatgatga
gtgtgaaaaaaatcttacaatagaactaattattttgcatgctaatatcc
ccccaataatctttaattaaacaggaagacaaatttagcatgtaatttca
ttatacaataaagcaaacaaaataatgcatggatcatttactaattttac
tttacttgcattttatctttttaaaagacaagctagtacatatcaaaaaa
gtcattgatattcaatttcattagtattcaataaacacggtctgaagaga
tagatccatagttaggaggatatgttgcttttacagataacccaagttca
gttcccaacacacaagttaactggctcacaacaatctagaacttcagctc
cagatccaggggatatgacagctctggccttcacaggctcctgcactcac
ggggacatatacacatgcagacacattcacctacacacaatttaaattaa
taaaaatacagcttaacaaataaacctaagtgccacttgacacatattct
tctttttatcacagtgtaatttactcaaattataaagtaaatttgcagat
ggctagttgtaataatgtgtgtggattatattggtatctctttctgtagc
actctcacctcgcatgtcaatgtcttcttctctgtgagtgattttgtaca
tctatgc
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgtttttggat
tcttcaggatctgttgttatgtctccctttttcattttctgattttgttt
atttaggattttgtccctgtgccctttagtgagtgtagctaagggtttat
ctatccttgttgatttcttaaagaaccacctcctcgtttggttaattctt
tgaatagtcttcttgtttccacttggttgattcacccctgaatttgatat
tctgccgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_165438150_165439275
seq2: B6Ng01-107A14.b_46_1152

seq1  GAATTCTACATAGTCTTAGTGGGAATGAAGCATTCTATTACCACTAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATAGTCTTAGTGGGAATGAAGCATTCTATTACCACTAGTAT  50

seq1  GGAGGCTTCTCAGAAAACTAAAACTAGGTAGGAAGTAGAGCAAAATCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTCTCAGAAAACTAAAACTAGGTAGGAAGTAGAGCAAAATCCTG  100

seq1  TCACTTATTGGGAAATAGAAGGAACTGAAGATAACCATTTTAAGGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTATTGGGAAATAGAAGGAACTGAAGATAACCATTTTAAGGAAAAT  150

seq1  ATGTCATATATAGGAAGAAAAATGTCATTTTTCTTTTTTATGGAGAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATATATAGGAAGAAAAATGTCATTTTTCTTTTTTATGGAGAATCT  200

seq1  AGATTTAAATATAAAAATATATTACATGAAAATAGAAGGGGGAATCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAATATAAAAATATATTACATGAAAATAGAAGGGGGAATCTGAA  250

seq1  GGAAGAGGTCAAATGGAGGTGACAGAGGATAATTGGAAGAAGAAGACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGTCAAATGGAGGTGACAGAGGATAATTGGAAGAAGAAGACAAA  300

seq1  ATACAAAGTTTTGTCCCATTTTTAGAATTTAAATGATTTATACAAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGTTTTGTCCCATTTTTAGAATTTAAATGATTTATACAAGCATG  350

seq1  CATGAGTGTACACATATATGTGACATGAAATCAGAAGGGAAATGATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGTACACATATATGTGACATGAAATCAGAAGGGAAATGATTTAT  400

seq1  TGAAGAGAGTGGAGACCAGTGAGGTGAGATTGGAGAGTGTACAATGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAGTGGAGACCAGTGAGGTGAGATTGGAGAGTGTACAATGATGA  450

seq1  GTGTGAAAAAAATCTTACAATAGAACTAATTATTTTGCATGCTAATATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAAAAATCTTACAATAGAACTAATTATTTTGCATGCTAATATCC  500

seq1  CCCCAATAATCTTTAATTAAACAGGAAGACAAATTTAGCATGTAATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATAATCTTTAATTAAACAGGAAGACAAATTTAGCATGTAATTTCA  550

seq1  TTATACAATAAAGCAAACAAAATAATGCATGGATCATTTACTAATTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAATAAAGCAAACAAAATAATGCATGGATCATTTACTAATTTTAC  600

seq1  TTTACTTGCATTTTATCTTTTTAAAAGACAAGCTAGTACATATCAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGCATTTTATCTTTTTAAAAGACAAGCTAGTACATATCAAAAAA  650

seq1  GTCATTGATATTCAATTTCATTAGTATTCAATAAACACGGTCTGAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGATATTCAATTTCATTAGTATTCAATAAACACGGTCTGAAGAGA  700

seq1  TAGATCCATAGTTAGGAGGATATGTTGCTTTTACAGATAACCCAAGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCATAGTTAGGAGGATATGTTGCTTTTACAGATAACCCAAGTTCA  750

seq1  GTTCCCAACACACAAGTTAACTGGCTCACAACAATCTAGAACTTCAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAACACACAAGTTAACTGGCTCACAACAATCTAGAACTTCAGCTC  800

seq1  CAGATCCAGGGGATATGACAGCTCTGGCCTTCACAGGCTCCTGCACTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCAGGGGATATGACAGCTCTGGCCTTCACAGGCTCCTGCACTCAC  850

seq1  GGGGACATATACACATGCAGACACATTCACCTACACACAATTTAAATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATATACACATGCAGACACATTCACCTACACACAATTTAAATTAA  900

seq1  TAAAAATACAGCTTAACAAAATAAACCTAAGTGCCACTTGACACATATTC  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAAAATACAGCTTAAC-AAATAAACCTAAGTGCCACTTGACACATATTC  949

seq1  TTCTTTTTATCAACAGTGTAATTTACTCAAATTATAAAGTAAATTTGCAG  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTATC-ACAGTGTAATTTACTCAAATTATAAAGTAAATTTGCAG  998

seq1  ATGGCTAGTTGTAAATAATGTGTGTGGAATTATATTGGTATCTCTTTCTG  1050
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  ATGGCTAGTTGT-AATAATGTGTGTGG-ATTATATTGGTATCTCTTTCTG  1046

seq1  TAGCACTCTCCACCCCCTCCCGCCATGTTCCAATGTCCTTCTTCTCTGTG  1100
      |||||||||    | ||||    |||||  |||||| |||||||||||||
seq2  TAGCACTCT----CACCTC---GCATGT--CAATGT-CTTCTTCTCTGTG  1086

seq1  AGTTGATTTTTTGGTACATCTTATGC  1126
      || |||||||   ||||||| |||||
seq2  AG-TGATTTT---GTACATC-TATGC  1107

seq1: chr8_9554669_9555233
seq2: B6Ng01-107A14.g_364_926 (reverse)

seq1  AGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC  50
      |||||||||  ||| |||||| ||||||||| ||||||||||||||||||
seq2  AGACGGCAG--AAT-ATCAAATTCAGGGGTG-AATCAACCAAGTGGAAAC  46

seq1  AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGA  100
      |||||| ||||||||||||||||||||||||||||| ||||||||| || 
seq2  AAGAAG-ACTATTCAAAGAATTAACCAAACGAGGAGGTGGTTCTTTAAG-  94

seq1  AAATCAACAA-GATAGATAAACCCTTAGCTACACTCACTAAAGGGCACAG  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACAAGGATAGATAAACCCTTAGCTACACTCACTAAAGGGCACAG  144

seq1  GGACAAAATCCT-AATTAACAAAATCAG-AAATG-AAAAGGGAGACATAA  196
      |||||||||||| ||| ||||||||||| ||||| |||||||||||||||
seq2  GGACAAAATCCTAAATAAACAAAATCAGAAAATGAAAAAGGGAGACATAA  194

seq1  CAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGG  246
      |||||||||||||||||  | |||||||||||||||||||||||||||||
seq2  CAACAGATCCTGAAGAATCCAAAAACACCATCAGATCCTTCTACAAAAGG  244

seq1  CTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGA  294

seq1  CAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACA  344

seq1  GTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCC  394

seq1  AAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTT  444

seq1  CAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAG  494

seq1  TAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATA  544

seq1  CCTAAACCACAGAAAGATC  565
      |||||||||||||||||||
seq2  CCTAAACCACAGAAAGATC  563