BAC Information

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BAC

Clone NameB6Ng01-109B06
ChromosomeX (Build37)
Map Location 22,357,287 - 22,552,266
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043182, LOC100043956, EG436197, Ppia-psx_207.1, 1700023I07Rik
Downstream geneKlhl13, EG635719, Wdr44, EG236749, EG214450, EG245376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109B06.bB6Ng01-109B06.g
ACCDH916088DH916089
length1,208997
definitionDH916088|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B06, 5' end.DH916089|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,357,287 - 22,358,530)(22,551,721 - 22,552,266)
sequence
gaattcaaaacttttacttagatggcagctgtttaaacggttatgtgtgc
agttatatgtcaaattttatgtgtgcagcttaccaacaatgttcctttat
tggaaaatcagtatttccacagttcccaaaaagactggaaagcttcacaa
tttggtgtcttcttcaggtggcttctcttaattctaccctgctttattaa
tgattcacttcatatcatcattcatctctatctttgtgcattttctttag
aacatctatttatccccccagttaaatttgttttgatatcatagaaggct
tttatttctttttgcactctttttcaacctcactcaaataattgctcagt
gtgttctctgtttcctttctgcattaagatagtaattgaattttgctgtt
ttgttttggtaatatagtggctttctctgttatgtagccttggctgtcct
agaacactctatgtaggccagagtggcctagaactcacagattcacttgt
ctttatcatctaggtgctggacttaaagctatatggtcctgctcaaactt
cacttgaatgtttttgaactaccctccacagaaagggtctttaaaagaga
ctgttgacattgtagactaactctttccatttacattagtagagaaggtt
actgcatgtatatctgtgcaccatgtgagcatctggtaaccatggaggcc
aaaagagggtgttgaagccattgaaactggagttatgggttgtggtgagc
tgccgtgtgtgtgctgggaatcaaatctgggtcttttagaatagcatcta
ctgctcttaaccactgaactccctctctagctccgtacttacattcttta
ccaatcagatggcttctgtgtgacatacatattgtgatagtttgtatatc
cttggaccagggagtggcaccatctggagtgtggcttgttggaatagtgt
gacctggttggaatgggtgtgtcactgtgggtatgggcataagatcctca
ccctagtttcctggaagtcatttttcactagctgacttcggatgagacgt
gaactttcgctctgctgcgccatacagctggatgctgcattgctcccacc
tgaaggatatggaagaccctgaaccggagactagccaattaaatgttggg
ttttaagacttgcttgattggtgctgttcacagaactaactagacaatat
agtcattc
gaattctttcctaggtttctatctccagagttttctcccgttgtgatttc
tttattgtttctacttccatttttagatcctggatggtcttgttcaattc
tttcacctgtttggatgtgttttcctgtaattctttatgggatttttgtg
tttcctctttaatggcttctacctgtttactttagagaagggactgtaga
tccatatcttgcttttctggtgtgatggatccaggatttactatggtggg
agagttgggttctgatcacgccaagtaaccttggtttctgttgcttctat
tcttatgcttgcctcccaacacctaattatctcaagtgttccctgccctt
gctatatcttattggaccctgtccttcctgtaatcctggttaagtcagaa
ctcctcagactccagctttctctgtgatactctgaatccagaatcctgtg
atcctgagattctaggtgtgtcagagttcttagccgtcaagctttctctg
agaccctgagatcctggtgtgaccaaggtcctttgatcctaagatcctgg
gcatattagagtgcctggaagtggtaccccctctgggggtcatggtgctg
tcctctgagtttgaaaccaaggtagaccagtgccgactggaaggaacctg
agccactggtcgggctgggttcctgtgtccctgctcctgctggccctagg
cactcctggtggtattggaagagatgttgtgttctactcaccattgatcc
tatgatcctgggtctgctagggtgcctgggggtagggagtagcagtggag
agtcctcttgggactttgggactgtctgcagagttcgtgctcaaggttgc
ccagtgctggtgtcacctacatatgttttgctttatataagtgaattata
gcattaggatactgagtgactttaccgtggtatcaacaacaaaaacgacc
aatagatgattgtgtgtagatgttaaatgccatcaaaacttcccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_22357287_22358530
seq2: B6Ng01-109B06.b_50_1257

seq1  GAATTCAAAACTTTTACTTAGATGGCAGCTGTTTAAACGGTTATGTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACTTTTACTTAGATGGCAGCTGTTTAAACGGTTATGTGTGC  50

seq1  AGTTATATGTCAAATTTTATGTGTGCAGCTTACCAACAATGTTCCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATGTCAAATTTTATGTGTGCAGCTTACCAACAATGTTCCTTTAT  100

seq1  TGGAAAATCAGTATTTCCACAGTTCCCAAAAAGACTGGAAAGCTTCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATCAGTATTTCCACAGTTCCCAAAAAGACTGGAAAGCTTCACAA  150

seq1  TTTGGTGTCTTCTTCAGGTGGCTTCTCTTAATTCTACCCTGCTTTATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTCTTCTTCAGGTGGCTTCTCTTAATTCTACCCTGCTTTATTAA  200

seq1  TGATTCACTTCATATCATCATTCATCTCTATCTTTGTGCATTTTCTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCACTTCATATCATCATTCATCTCTATCTTTGTGCATTTTCTTTAG  250

seq1  AACATCTATTTATCCCCCCAGTTAAATTTGTTTTGATATCATAGAAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTATTTATCCCCCCAGTTAAATTTGTTTTGATATCATAGAAGGCT  300

seq1  TTTATTTCTTTTTGCACTCTTTTTCAACCTCACTCAAATAATTGCTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTTTTTGCACTCTTTTTCAACCTCACTCAAATAATTGCTCAGT  350

seq1  GTGTTCTCTGTTTCCTTTCTGCATTAAGATAGTAATTGAATTTTGCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCTGTTTCCTTTCTGCATTAAGATAGTAATTGAATTTTGCTGTT  400

seq1  TTGTTTTGGTAATATAGTGGCTTTCTCTGTTATGTAGCCTTGGCTGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGGTAATATAGTGGCTTTCTCTGTTATGTAGCCTTGGCTGTCCT  450

seq1  AGAACACTCTATGTAGGCCAGAGTGGCCTAGAACTCACAGATTCACTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTCTATGTAGGCCAGAGTGGCCTAGAACTCACAGATTCACTTGT  500

seq1  CTTTATCATCTAGGTGCTGGACTTAAAGCTATATGGTCCTGCTCAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCATCTAGGTGCTGGACTTAAAGCTATATGGTCCTGCTCAAACTT  550

seq1  CACTTGAATGTTTTTGAACTACCCTCCACAGAAAGGGTCTTTAAAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAATGTTTTTGAACTACCCTCCACAGAAAGGGTCTTTAAAAGAGA  600

seq1  CTGTTGACATTGTAGACTAACTCTTTCCATTTACATTAGTAGAGAAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGACATTGTAGACTAACTCTTTCCATTTACATTAGTAGAGAAGGTT  650

seq1  ACTGCATGTATATCTGTGCACCATGTGAGCATCTGGTAACCATGGAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGTATATCTGTGCACCATGTGAGCATCTGGTAACCATGGAGGCC  700

seq1  AAAAGAGGGTGTTGAAGCCATTGAAACTGGAGTTATGGGTTGTGGTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGGTGTTGAAGCCATTGAAACTGGAGTTATGGGTTGTGGTGAGC  750

seq1  TGCCGTGTGTGTGCTGGGAATCAAATCTGGGTCTTTTAGAATAGCATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTGTGTGTGCTGGGAATCAAATCTGGGTCTTTTAGAATAGCATCTA  800

seq1  CTGCTCTTAACCACTGAACTCCCTCTCTAGCTCCGTACTTACATTCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTAACCACTGAACTCCCTCTCTAGCTCCGTACTTACATTCTTTA  850

seq1  CCAATCAGATGGCTTCTGTGTGACATACATATTGTGATAGTTTGTATATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAGATGGCTTCTGTGTGACATACATATTGTGATAGTTTGTATATC  900

seq1  CTTGGACCAGGGAGTGGCACCATCTGGAGGTGTGGCCTTGTTGGAATAGG  950
      |||||||||||||||||||||||||||| |||||| |||||||||||| |
seq2  CTTGGACCAGGGAGTGGCACCATCTGGA-GTGTGG-CTTGTTGGAATA-G  947

seq1  TGTGACCTGGTTGGAATGGGTGTGTCACTGTGGGTATGGGCATAAGATCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTGGTTGGAATGGGTGTGTCACTGTGGGTATGGGCATAAGATCC  997

seq1  TCACCCTAGTTTCCTGGAAGTCAGTCTTCCACTAGCTGACTTCGGATGAA  1050
      ||||||||||||||||||||||| | || ||||||||||||||||||| |
seq2  TCACCCTAGTTTCCTGGAAGTCA-TTTTTCACTAGCTGACTTCGGATG-A  1045

seq1  GACGTAGAACTTTCAGCTCTGCCTGCGCCATGACAGCCTGGATGCTGCCA  1100
      ||||| |||||||| |||||| ||||||||| |||| |||||||||||  
seq2  GACGT-GAACTTTC-GCTCTG-CTGCGCCAT-ACAG-CTGGATGCTGCAT  1090

seq1  TGCTCCCACCTTGATGATAATGGAATGAACCTCTGAACCTGTAAGCTAGC  1150
      |||||||||||  | ||| |||||| ||  | ||||||| | |  |||| 
seq2  TGCTCCCACCTGAAGGAT-ATGGAA-GA--CCCTGAACC-GGAGACTAG-  1134

seq1  CCCAATTAAATGTTGTGTTTTATAAGACTTGCCTTGGTTTTGGTGTCTGT  1200
       |||||||||||||| ||||  ||||||||| ||||   |||||| ||||
seq2  -CCAATTAAATGTTGGGTTT--TAAGACTTG-CTTG--ATTGGTG-CTGT  1177

seq1  TCACAGCAGTAAAACCCTAACTAAGACACATATATAGCTCATTC  1244
      |||||| |        |||||| |||||   |||||| ||||||
seq2  TCACAGAA--------CTAACT-AGACA---ATATAG-TCATTC  1208

seq1: chrX_22551721_22552266
seq2: B6Ng01-109B06.g_527_1064 (reverse)

seq1  CAAGGGAGTATCTGATGAGCATTTAACATCTACAACACAATCATCTATTG  50
      |||||||   | ||||| ||||||||||||||| ||||||||||||||||
seq2  CAAGGGAAGTTTTGATG-GCATTTAACATCTAC-ACACAATCATCTATTG  48

seq1  GTCGTATTTTGTTTGTTGATACCACGGTAAAGTCACTCAGTATCCTAATG  100
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCGT-TTTTG-TTGTTGATACCACGGTAAAGTCACTCAGTATCCTAATG  96

seq1  CTATAATTTCACTTTATATAAAGCAAAACATACTGTAGGTTGACACCAGC  150
      |||||| ||||| ||||||||||||||||||| |||||| ||||||||||
seq2  CTATAA-TTCAC-TTATATAAAGCAAAACATA-TGTAGG-TGACACCAGC  142

seq1  ACTGGGCAACCTTGAGCACGAACTCTGCAGACAGTCCCAAAGTCCCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCAACCTTGAGCACGAACTCTGCAGACAGTCCCAAAGTCCCAAGA  192

seq1  GGACTCTCCACTGCTACTCCCTACCCCCAGGCACCCTAGCAGACCCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTCCACTGCTACTCCCTACCCCCAGGCACCCTAGCAGACCCAGGA  242

seq1  TCATAGGATCAATGGTGAGTAGAACACAACATCTCTTCCAATACCACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGATCAATGGTGAGTAGAACACAACATCTCTTCCAATACCACCAG  292

seq1  GAGTGCCTAGGGCCAGCAGGAGCAGGGACACAGGAACCCAGCCCGACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCTAGGGCCAGCAGGAGCAGGGACACAGGAACCCAGCCCGACCAG  342

seq1  TGGCTCAGGTTCCTTCCAGTCGGCACTGGTCTACCTTGGTTTCAAACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGGTTCCTTCCAGTCGGCACTGGTCTACCTTGGTTTCAAACTCA  392

seq1  GAGGACAGCACCATGACCCCCAGAGGGGGTACCACTTCCAGGCACTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGCACCATGACCCCCAGAGGGGGTACCACTTCCAGGCACTCTAA  442

seq1  TATGCCCAGGATCTTAGGATCAAAGGACCTTGGTCACACCAGGATCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCAGGATCTTAGGATCAAAGGACCTTGGTCACACCAGGATCTCAG  492

seq1  GGTCTCAGAGAAAGCTTGACGGCTAAGAACTCTGACACACCTAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGAGAAAGCTTGACGGCTAAGAACTCTGACACACCTAGAA  538