BAC Information

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BAC

Clone NameB6Ng01-110M23
ChromosomeX (Build37)
Map Location 43,695,492 - 43,849,078
singlet/doubletdoublet
Overlap geneEG245405
Upstream geneLOC100040038, EG385346, LOC100040075, Actrt1
Downstream geneLOC665632, EG434775, LOC236775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110M23.bB6Ng01-110M23.g
ACCDH917329DH917330
length8961,074
definitionDH917329|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M23, 5' end.DH917330|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,695,492 - 43,696,380)(43,848,014 - 43,849,078)
sequence
gaattcaaaaggggttgctgtagaaaaaatagtttgcaatagggagctaa
tataatataagtggtatgaacagggaaatgggaatattgtggatggagct
gtatgttggcaggagaatggaaagattggaaagacataaaatagatgtgg
tagagagaagggataactataattagtggtgtttggaaaagccaagtgga
aacatattttataagtttcatacgcacacacacacatcaataataattaa
agaggaataggtcatcaaattaagagagaatgtgatggatagggaagagt
tgtagtgagagagtatggaatggaaatgatataaacacagtactcagcta
tgaattttttaaaaatagcaagtttgttttgtttctttttcctaaagaga
gagagggagagagaaaccaaaaccaaaaccaaaggttaactggaactacc
ctagaagggcaaaaagtatcttcccagatgccatacaaaaaaattcactc
aaagatatgggatactctgccacttaaacttgatcagagaggtcccagag
tacccacacgaactagattgtatgaccctattgctaaagataccacattc
ttcattcaaaaggcatggagagttcaccatggtagtgatttgaaatcttt
ctccttcctggctaattttcataatctcagcagtgctatgtggctgctga
ttgagaaaaatctccaggccgtcgtggtggcatatgcctttaatcccagc
acttgggaggcagaggcaggcagatttctgaatttcgaggccagcctggt
ctacagagtgagttccagatcagggcaagggctatacagagaaaccctgc
tttgaaaaaaagaaagaaggaagaaagaaggaggatgatggaagga
gaattcagtgcagcctcccaaaggactgttcaaagatctccaggtaaaga
aaaatctgttctggaaacaggggaaaaagaagaaaatggaataaaataag
agtctgctgcatcagttaagaattttagaggaaaagataaaagcagcagg
aaagtaaaatgattccaagctcacaagagcagccagagatgaaaaggggc
atacaggtaatgggaagtctttgttattatatcatagagagatcagaaac
aaaatggattgcctaatacattgaagtaagcacaattaaaatgactatta
actctgccttttcatgtctatatttaacaacaatgatgtatttcttttct
aagagctatttgggcaagtttgaaataatggaaactgagcaaaaagtgaa
cagccaggagctagtcattaaatgaggaaagaattacattagggactagg
aaacttctggtttggattcttatggcctttttatttaatactctatgttt
tgcctccatagatcaaatttagatctgtttctaggaagataagcattgtg
aggaaatatcagtaaaatcaggtatatctgtgcttaaaatcatagtattt
aaatacagttatgttatggggtgagtttttaaatttttgttataaaacag
acacataaaagaaaacaattgaaatttcaacgtgaaggaataattattgg
ctgtctggctatcttcaaaggatggtaagaaatattttgctcaagtagac
acccacaaattgctatacttaagacagagaacattgcattagacacatat
ttgtatcttgtaagttttgaaatagctcaaggcgagatgataggaaagat
aaattgcagttttttttacattagttgatttttgcatttgtaccatttgc
aagtagttttctgttaacttcctctaaaccacactctttatgtaacctca
gatgtacctcataatacatcttccttatagtcatattcctttgttagcca
tccattcaaattaaactaccatacctgtgtttttggatttttgtgtatgt
ttaacttttcccaagaattgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_43695492_43696380
seq2: B6Ng01-110M23.b_52_947

seq1  GAATTCAAAAGGGGTTGCTGTAGAAAAAATAGTTTGCAATAGGGAGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGGGTTGCTGTAGAAAAAATAGTTTGCAATAGGGAGCTAA  50

seq1  TATAATATAAGTGGTATGAACAGGGAAATGGGAATATTGTGGATGGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATAAGTGGTATGAACAGGGAAATGGGAATATTGTGGATGGAGCT  100

seq1  GTATGTTGGCAGGAGAATGGAAAGATTGGAAAGACATAAAATAGATGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTGGCAGGAGAATGGAAAGATTGGAAAGACATAAAATAGATGTGG  150

seq1  TAGAGAGAAGGGATAACTATAATTAGTGGTGTTTGGAAAAGCCAAGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAAGGGATAACTATAATTAGTGGTGTTTGGAAAAGCCAAGTGGA  200

seq1  AACATATTTTATAAGTTTCATACGCACACACACACATCAATAATAATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTTTATAAGTTTCATACGCACACACACACATCAATAATAATTAA  250

seq1  AGAGGAATAGGTCATCAAATTAAGAGAGAATGTGATGGATAGGGAAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATAGGTCATCAAATTAAGAGAGAATGTGATGGATAGGGAAGAGT  300

seq1  TGTAGTGAGAGAGTATGGAATGGAAATGATATAAACACAGTACTCAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGAGAGAGTATGGAATGGAAATGATATAAACACAGTACTCAGCTA  350

seq1  TGAATTTTTTAAAAATAGCAAGTTTGTTTTGTTTCTTTTTCCTAAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTTAAAAATAGCAAGTTTGTTTTGTTTCTTTTTCCTAAAGAGA  400

seq1  GAGAGGGAGAGAGAAACCAAAACCAAAACCAAAGGTTAACTGGAACTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAGAGAGAAACCAAAACCAAAACCAAAGGTTAACTGGAACTACC  450

seq1  CTAGAAGGGCAAAAAGTATCTTCCCAGATGCCATACAAAAAAATTCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGGCAAAAAGTATCTTCCCAGATGCCATACAAAAAAATTCACTC  500

seq1  AAAGATATGGGATACTCTGCCACTTAAACTTGATCAGAGAGGTCCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATGGGATACTCTGCCACTTAAACTTGATCAGAGAGGTCCCAGAG  550

seq1  TACCCACACGAACTAGATTGTATGACCCTATTGCTAAAGATACCACATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACACGAACTAGATTGTATGACCCTATTGCTAAAGATACCACATTC  600

seq1  TTCATTCAAAAGGCATGGAGAGTTCACCATGGTAGTGATTTGAAATCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAAAAGGCATGGAGAGTTCACCATGGTAGTGATTTGAAATCTTT  650

seq1  CTCCTTCCTGGCTAATTTTCATAATCTCAGCAGTGCTATGTGGCTGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCTGGCTAATTTTCATAATCTCAGCAGTGCTATGTGGCTGCTGA  700

seq1  TTGAGAAAAATCTCCAGGCCGTCGTGGTGGCATATGCCTTTAATCCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAAATCTCCAGGCCGTCGTGGTGGCATATGCCTTTAATCCCAGC  750

seq1  ACTTGGGAGGCAGAGGCAGGCAGATTTCTGAA-TTCGAGGCCAGCCTGGT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTTGGGAGGCAGAGGCAGGCAGATTTCTGAATTTCGAGGCCAGCCTGGT  800

seq1  CTACAGAGTGAGTTCCAGAACAGG--CAGGGCTATACAGAGAAACCCTGC  847
      ||||||||||||||||||| ||||   |||||||||||||||||||||||
seq2  CTACAGAGTGAGTTCCAGATCAGGGCAAGGGCTATACAGAGAAACCCTGC  850

seq1  TTTGAAAAAAAGAAAGAAG---GAAAGAAAG-GAAGGAAGGAAGGA  889
      |||||||||||||||||||   ||||||| | | | || |||||||
seq2  TTTGAAAAAAAGAAAGAAGGAAGAAAGAAGGAGGATGATGGAAGGA  896

seq1: chrX_43848014_43849078
seq2: B6Ng01-110M23.g_69_1142 (reverse)

seq1  TTTTCAA-TCTTGGAAAAAG-TAAACATACACAAAATCATAAAAACACA-  47
      ||||||| |||||| ||||| |||||||||||||||    ||||||||| 
seq2  TTTTCAATTCTTGGGAAAAGTTAAACATACACAAAAATCCAAAAACACAG  50

seq1  GTATGGTAGTTTAA-TTGAATGGATGGCTAACAAA-GAATATGACTATAA  95
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  GTATGGTAGTTTAATTTGAATGGATGGCTAACAAAGGAATATGACTATAA  100

seq1  -GAAGATTGTA-TATGA-GTACATCTGA-GTTACATAAAGAGTGT-GTTT  140
       ||||| |||| ||||| |||||||||| |||||||||||||||| ||||
seq2  GGAAGA-TGTATTATGAGGTACATCTGAGGTTACATAAAGAGTGTGGTTT  149

seq1  AGA-GAAGTTAACAGAAAACTACTTGCAAATGGTACAAATGCAAAAATCA  189
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGTTAACAGAAAACTACTTGCAAATGGTACAAATGCAAAAATCA  199

seq1  ACTAATGTAAAAAAAACTGCAATTTTATCTTTCCTATCATCTCGCCTTGA  239
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTAATGTAAAAAAAACTGCAA-TTTATCTTTCCTATCATCTCGCCTTGA  248

seq1  GCTATTTCAAAACTTACAAGATACAAATATGTGTCTAATGCAATGTTCTC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCAAAACTTACAAGATACAAATATGTGTCTAATGCAATGTTCTC  298

seq1  TGTCTTAAGTATAGCAATTTGTGGGTGTCTACTTGAGCAAAATATTTCTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAAGTATAGCAATTTGTGGGTGTCTACTTGAGCAAAATATTTCTT  348

seq1  ACCATCCTTTGAAGATAGCCAGACAGCCAATAATTATTCCTTCACGTTGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTTTGAAGATAGCCAGACAGCCAATAATTATTCCTTCACGTTGA  398

seq1  AATTTCAATTGTTTTCTTTTATGTGTCTGTTTTATAACAAAAATTTAAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAATTGTTTTCTTTTATGTGTCTGTTTTATAACAAAAATTTAAAA  448

seq1  ACTCACCCCATAACATAACTGTATTTAAATACTATGATTTTAAGCACAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCCCATAACATAACTGTATTTAAATACTATGATTTTAAGCACAGA  498

seq1  TATACCTGATTTTACTGATATTTCCTCACAATGCTTATCTTCCTAGAAAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTGATTTTACTGATATTTCCTCACAATGCTTATCTTCCTAGAAAC  548

seq1  AGATCTAAATTTGATCTATGGAGGCAAAACATAGAGTATTAAATAAAAAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAAATTTGATCTATGGAGGCAAAACATAGAGTATTAAATAAAAAG  598

seq1  GCCATAAGAATCCAAACCAGAAGTTTCCTAGTCCCTAATGTAATTCTTTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAGAATCCAAACCAGAAGTTTCCTAGTCCCTAATGTAATTCTTTC  648

seq1  CTCATTTAATGACTAGCTCCTGGCTGTTCACTTTTTGCTCAGTTTCCATT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTAATGACTAGCTCCTGGCTGTTCACTTTTTGCTCAGTTTCCATT  698

seq1  ATTTCAAACTTGCCCAAATAGCTCTTAGAAAAGAAATACATCATTGTTGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAACTTGCCCAAATAGCTCTTAGAAAAGAAATACATCATTGTTGT  748

seq1  TAAATATAGACATGAAAAGGCAGAGTTAATAGTCATTTTAATTGTGCTTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAGACATGAAAAGGCAGAGTTAATAGTCATTTTAATTGTGCTTA  798

seq1  CTTCAATGTATTAGGCAATCCATTTTGTTTCTGATCTCTCTATGATATAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGTATTAGGCAATCCATTTTGTTTCTGATCTCTCTATGATATAA  848

seq1  TAACAAAGACTTCCCATTACCTGTATGCCCCTTTTCATCTCTGGCTGCTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGACTTCCCATTACCTGTATGCCCCTTTTCATCTCTGGCTGCTC  898

seq1  TTGTGAGCTTGGAATCATTTTACTTTCCTGCTGCTTTTATCTTTTCCTCT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCTTGGAATCATTTTACTTTCCTGCTGCTTTTATCTTTTCCTCT  948

seq1  AAAATTCTTAACTGATGCAGCAGACTCTTATTTTATTCCATTTTCTTCTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTTAACTGATGCAGCAGACTCTTATTTTATTCCATTTTCTTCTT  998

seq1  TTTCCCCTGTTTCCAGAACAGATTTTTCTTTACCTGGAGATCTTTGAACA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTGTTTCCAGAACAGATTTTTCTTTACCTGGAGATCTTTGAACA  1048

seq1  GTCCTTTGGGAGGCTGCACTGAATTC  1065
      ||||||||||||||||||||||||||
seq2  GTCCTTTGGGAGGCTGCACTGAATTC  1074