BAC Information

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BAC

Clone NameB6Ng01-111F03
ChromosomeX (Build37)
Map Location 108,961,328 - 109,066,463
singlet/doubletdoublet
Overlap geneLOC100038989
Upstream genePou3f4, Cylc1, LOC100042872, Rps6ka6, EG664791, D030011N01Rik
Downstream geneTex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111F03.bB6Ng01-111F03.g
ACCDH917694DH917695
length1,1701,058
definitionDH917694|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F03, 5' end.DH917695|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,065,271 - 109,066,463)(108,961,328 - 108,962,390)
sequence
gaattcatgtctggtgctataaatctaaccaactgtttatccacagctag
agaaaatcatagaccctagaggagagcccactactgccattttcattaac
tgataaaatttctaattatactctagatacctatacttacgcccacagag
aagcatagttctcacccctgatcaatgaagcttcttttcccagtagactg
aggctgctatagatgtccacaataggtaaaatgaaaataataagtgacca
tggagtgctaatagaattaagggtacagatcagctgacattaaaatgtaa
aggttatattctattgcataggtggatccaggacaattaacacaggcctt
taaacacaatattagaagacagaaaaaatagttcaacgaacttccatgaa
ttgaaaaagactctgaagacactcaaaaataggataaacatgagttattg
ttgcctttgaagataaaggaaggatgctatgaggcaaataatgtgtgcat
ccttcagtatctggtagtggtttcaactgacaaccaacaagaaaaaagta
ctctaatctttgtaatcccaaggaatttgattttcccaacattctgaata
aacaaggcaaaattatcttaacacactttgagattatcctactaagagtc
atactgagctctaagtaataaattaataaacagttgtaagccaccaaggt
tcttattaaacaataacaaataatatacttggagataattgattcagggt
tactactgagatagattctttgccatcatatccatataccaccaatcccc
tctatcctacattcttaatttcttcttcatttgttaacttgcttgatatt
tctaacttccataaaatttggaggttcatttattttataagaactagaag
tttcccagaagagatgctaatcaatgtcacaaataaccaacattaagcat
tcaattcaacacacagatctttgcctcaggcagaaaactgacagcatatt
gttaaatgctctttctatgctgatactgtgtatgactatgttaacaactt
aatatactagtacacccagtactgggtacagattcttatttatcatgaac
ttaataactagcacttctaagtagacttttattggctagctaaggccaac
tgtcactgtagtctacaaac
gaattctcattttcatccatccatacctctcccaatttgatcatcatttt
gggatatttaacagttttttttttcttggtttgtgatttattgatattag
cggttactttctttattaaaaaaaaaatcctattggtgtttatttgcttt
ggaaaagaactagagtaaatctgcctttatttgtacattttacgcaaatt
gatacagcaaatagtttttttcaaaaatttctcttcctttaaaaacataa
aataccacctatatcccttatatagatgagacaactgggactcatttatt
aatgactttctcaagcagagagttacatgaatcattaaaattgtggtcct
tattaaaatgcaatggcatttttaattagaaagtcatataatatacagca
ttctacatagaacttggcccaataccaagaaattactgagttattagcat
ctgtatatatgtataaaatataataaaaggagaactagcattaatgcaaa
caaaattttaataaaattatattgtatcagtttttgttacttaagtagat
tgtgactgctattgttccaaaatacagctgtcagataatatatattgtta
ttttccctactatcatgatcattttcctttctctctctgtctctctctgt
ctctctctgtctctctttcttgctctctctctctctctctctctctctct
ctctctctctatctatatatgtccaataatagcttgtagtttaaatctta
attatacataataaaatttgtttttgacactaaattaatgtattattggg
agacatttatagcccagttaacaagttacagaagtttaaaactacatgct
ttatattaatttataattttaatctgaattttataattctaaaaatttaa
tagcttgatctatctcttataaaaactatgagttacttttcccaattaaa
caaaatatgacaacagatgaaaggtcagacactcatattcagaggcagat
aatacccaaaaggattgtttcatacaaatttacatggagttgagactaat
tcattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_109065271_109066463
seq2: B6Ng01-111F03.b_48_1217 (reverse)

seq1  GTTTGTAGAACTTACAGTTTGACAGTTTGCCTCTAGCTAGCCAATAAAAG  50
      |||||||||   |||||  |||||||| |||| |||||||||||||||||
seq2  GTTTGTAGA--CTACAG--TGACAGTTGGCCT-TAGCTAGCCAATAAAAG  45

seq1  TCTACTTTAGAAGTTGCTAGTTATTAGTTTCATTGATTAAATAAGAATCT  100
      ||||| ||||||| ||||||||||||  |||| ||| |||||||||||||
seq2  TCTAC-TTAGAAG-TGCTAGTTATTAAGTTCA-TGA-TAAATAAGAATCT  91

seq1  GTAACCAGTACTGGGTGTTACTAAGTATATTAAGGTGTTAAACATTAGTC  150
      ||| ||||||||||||| |||| ||||||||||| |||| |||| |||||
seq2  GTACCCAGTACTGGGTG-TACT-AGTATATTAAGTTGTT-AACA-TAGTC  137

seq1  ATACACAAGTAATCAGCATAGAAAAGAAGCAATTTTAACAATTATGCTGT  200
      |||||| ||| |||||||||||||   ||||  |||||||| ||||||||
seq2  ATACAC-AGT-ATCAGCATAGAAA--GAGCA--TTTAACAA-TATGCTGT  180

seq1  CAGTTTTTCTGCCTGGAGGCAAAGATCTGTGTGTTGAATTGAATGCTTAA  250
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAG-TTTTCTGCCT-GAGGCAAAGATCTGTGTGTTGAATTGAATGCTTAA  228

seq1  TGTTGGTTATTTGTGACATTGATTAGCATCTCTTTCTGGGAAACTTCTAG  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTGGTTATTTGTGACATTGATTAGCATCTC-TTCTGGGAAACTTCTAG  277

seq1  TTCTTATAAAATAAATGAACCTCCAAATTTTATGGAAGTTAGAAATATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAAAATAAATGAACCTCCAAATTTTATGGAAGTTAGAAATATCA  327

seq1  AGCAAGTTAACAAATGAAGAAGAAATTAAGAATGTAGGATAGAGGGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTAACAAATGAAGAAGAAATTAAGAATGTAGGATAGAGGGGATT  377

seq1  GGTGGTATATGGATATGATGGCAAAGAATCTATCTCAGTAGTAACCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTATATGGATATGATGGCAAAGAATCTATCTCAGTAGTAACCCTGA  427

seq1  ATCAATTATCTCCAAGTATATTATTTGTTATTGTTTAATAAGAACCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTATCTCCAAGTATATTATTTGTTATTGTTTAATAAGAACCTTGG  477

seq1  TGGCTTACAACTGTTTATTAATTTATTACTTAGAGCTCAGTATGACTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACAACTGTTTATTAATTTATTACTTAGAGCTCAGTATGACTCTT  527

seq1  AGTAGGATAATCTCAAAGTGTGTTAAGATAATTTTGCCTTGTTTATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGATAATCTCAAAGTGTGTTAAGATAATTTTGCCTTGTTTATTCAG  577

seq1  AATGTTGGGAAAATCAAATTCCTTGGGATTACAAAGATTAGAGTACTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGGAAAATCAAATTCCTTGGGATTACAAAGATTAGAGTACTTTT  627

seq1  TTCTTGTTGGTTGTCAGTTGAAACCACTACCAGATACTGAAGGATGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTGGTTGTCAGTTGAAACCACTACCAGATACTGAAGGATGCACA  677

seq1  CATTATTTGCCTCATAGCATCCTTCCTTTATCTTCAAAGGCAACAATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGCCTCATAGCATCCTTCCTTTATCTTCAAAGGCAACAATAAC  727

seq1  TCATGTTTATCCTATTTTTGAGTGTCTTCAGAGTCTTTTTCAATTCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTATCCTATTTTTGAGTGTCTTCAGAGTCTTTTTCAATTCATGG  777

seq1  AAGTTCGTTGAACTATTTTTTCTGTCTTCTAATATTGTGTTTAAAGGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCGTTGAACTATTTTTTCTGTCTTCTAATATTGTGTTTAAAGGCCT  827

seq1  GTGTTAATTGTCCTGGATCCACCTATGCAATAGAATATAACCTTTACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATTGTCCTGGATCCACCTATGCAATAGAATATAACCTTTACATT  877

seq1  TTAATGTCAGCTGATCTGTACCCTTAATTCTATTAGCACTCCATGGTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTCAGCTGATCTGTACCCTTAATTCTATTAGCACTCCATGGTCAC  927

seq1  TTATTATTTTCATTTTACCTATTGTGGACATCTATAGCAGCCTCAGTCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTCATTTTACCTATTGTGGACATCTATAGCAGCCTCAGTCTA  977

seq1  CTGGGAAAAGAAGCTTCATTGATCAGGGGTGAGAACTATGCTTCTCTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAAGAAGCTTCATTGATCAGGGGTGAGAACTATGCTTCTCTGTG  1027

seq1  GGCGTAAGTATAGGTATCTAGAGTATAATTAGAAATTTTATCAGTTAATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTAAGTATAGGTATCTAGAGTATAATTAGAAATTTTATCAGTTAATG  1077

seq1  AAAATGGCAGTAGTGGGCTCTCCTCTAGGGTCTATGATTTTCTCTAGCTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCAGTAGTGGGCTCTCCTCTAGGGTCTATGATTTTCTCTAGCTG  1127

seq1  TGGATAAACAGTTGGTTAGATTTATAGCACCAGACATGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAACAGTTGGTTAGATTTATAGCACCAGACATGAATTC  1170

seq1: chrX_108961328_108962390
seq2: B6Ng01-111F03.g_68_1125

seq1  GAATTCTCATTTTCATCCATCCATACCTCTCCCAATTTGATCATCATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTTCATCCATCCATACCTCTCCCAATTTGATCATCATTTT  50

seq1  GGGATATTTAACAGTTTTTTTTTTCTTGGTTTGTGATTTATTGATATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATTTAACAGTTTTTTTTTTCTTGGTTTGTGATTTATTGATATTAG  100

seq1  CGGTTACTTTCTTTATTAAAAAAAAAATCCTATTGGTGTTTATTTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTACTTTCTTTATTAAAAAAAAAATCCTATTGGTGTTTATTTGCTTT  150

seq1  GGAAAAGAACTAGAGTAAATCTGCCTTTATTTGTACATTTTACGCAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAACTAGAGTAAATCTGCCTTTATTTGTACATTTTACGCAAATT  200

seq1  GATACAGCAAATAGTTTTTTTCAAAAATTTCTCTTCCTTTAAAAACATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGCAAATAGTTTTTTTCAAAAATTTCTCTTCCTTTAAAAACATAA  250

seq1  AATACCACCTATATCCCTTATATAGATGAGACAACTGGGACTCATTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCACCTATATCCCTTATATAGATGAGACAACTGGGACTCATTTATT  300

seq1  AATGACTTTCTCAAGCAGAGAGTTACATGAATCATTAAAATTGTGGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTTCTCAAGCAGAGAGTTACATGAATCATTAAAATTGTGGTCCT  350

seq1  TATTAAAATGCAATGGCATTTTTAATTAGAAAGTCATATAATATACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAATGCAATGGCATTTTTAATTAGAAAGTCATATAATATACAGCA  400

seq1  TTCTACATAGAACTTGGCCCAATACCAAGAAATTACTGAGTTATTAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATAGAACTTGGCCCAATACCAAGAAATTACTGAGTTATTAGCAT  450

seq1  CTGTATATATGTATAAAATATAATAAAAGGAGAACTAGCATTAATGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATATGTATAAAATATAATAAAAGGAGAACTAGCATTAATGCAAA  500

seq1  CAAAATTTTAATAAAATTATATTGTATCAGTTTTTGTTACTTAAGTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTTAATAAAATTATATTGTATCAGTTTTTGTTACTTAAGTAGAT  550

seq1  TGTGACTGCTATTGTTCCAAAATACAGCTGTCAGATAATATATATTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGCTATTGTTCCAAAATACAGCTGTCAGATAATATATATTGTTA  600

seq1  TTTTCCCTACTATCATGATCATTTTCCTTTCTCTCTCTGTCTCTCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTACTATCATGATCATTTTCCTTTCTCTCTCTGTCTCTCTCTGT  650

seq1  CTCTCTCTGTCTCTCTTTCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTCTCTCTTTCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCT  700

seq1  CTCTCTCTCTATCTATATATGTCCAATAATAGCTTGTAG-TTAAATCTTA  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTCTCTCTATCTATATATGTCCAATAATAGCTTGTAGTTTAAATCTTA  750

seq1  ATTATACATAATAAAATTTGTTTTTGACACTAAATTAATGTATTATTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACATAATAAAATTTGTTTTTGACACTAAATTAATGTATTATTGGG  800

seq1  AGACA-TTATAGCCCAGTTAACAAGTTACAGAAG-TTAAAACTACATGCT  847
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  AGACATTTATAGCCCAGTTAACAAGTTACAGAAGTTTAAAACTACATGCT  850

seq1  TTATATTAATTTATAATTTTAATCTGAATTTTATAATTCTAAAAATTTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAATTTATAATTTTAATCTGAATTTTATAATTCTAAAAATTTAA  900

seq1  TAGCTTGATCTATCTCTTATAAAAACTATGAGTTACTTTTCCCAATTAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGATCTATCTCTTATAAAAACTATGAGTTACTTTTCCCAATTAAA  950

seq1  ACAAAAATATGACAACAGATGAAAAGTCAGACACTCATAATTCAGAGGCA  997
         ||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  --CAAAATATGACAACAGATGAAAGGTCAGACACTCAT-ATTCAGAGGCA  997

seq1  GATACATACCCAAAAAGGATTGTTTCATACAAAATTTACATGGAGTTGAG  1047
      |||| |||||| |||||||||||||||||| |||||||||||||||||| 
seq2  GATA-ATACCC-AAAAGGATTGTTTCATAC-AAATTTACATGGAGTTGA-  1043

seq1  GACATAATTCACTCTT  1063
      ||| ||||||| ||||
seq2  GAC-TAATTCATTCTT  1058