BAC Information

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BAC

Clone NameB6Ng01-111I22
ChromosomeX (Build37)
Map Location 69,117,032 - 69,227,089
singlet/doubletdoublet
Overlap geneGm1141, Prrg3, Fate1
Upstream genePpia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1, Mtmr1, Cd99l2, LOC667017, Hmgb3, LOC100040549, Gpr50, LOC654357, 2610030H06Rik
Downstream geneCnga2, Magea4, Gabre, Magea10, Gabra3, Gabrq, Magea9, Cetn2, Nsdhl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111I22.bB6Ng01-111I22.g
ACCDH917870DH917871
length1,0961,169
definitionDH917870|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I22, 5' end.DH917871|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,117,032 - 69,118,127)(69,225,912 - 69,227,089)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatgagaagtgggacttttaaaagacagagtcttcaaaacgt
tgggctgtattttatattattcttttgttttgttttgttttgttttttta
atccttaaggaagtttttaaaatttatttttatttatttatttattttta
ccagtttttgtcgtcaacaatgatgagatgtggcctttctgggatccttg
gtatgtgcgtgttcttgcagctaccattttttggttctgggtgcacaagt
aagtacattatcatgaacaaactgaattgtactcttgaaagatacccttg
cttttcagtatgtcttagcaaaatacttctaggaaagattagagcattat
atcagttacatgttttcagtgttgtgagcaaatgcccaattaaagctgta
caaagtttgagagttcagtccatgacagggaaggaatggccacaggagct
caaagcagttgggtcacattatatctatagtcaggaagaagtgagagatg
agtgcttgtgcacaagtcatttttttaatgtagtctaagacccaaggccc
tctgtggcacacatgcaggagttactcctcttagttagtgttttagaaca
tactaacagaaatacccagagatggtgtatcctaacatgattcaaatccc
atcattgacaataaaagattaaacatcttagaggcctagtgtttacattc
tctactttttaggctcaattaacttctatggggaatcatggaattc
gaattcagataaaggtcttgagagaaatcccaaatgccatgtaatgaaat
gacatcctgcctccaaggcctaccctcagcccatcttagacagctacatc
accaagcttaggcaaaggaatctagcagatcataccatcctggaagctaa
tgcagtttatagaccagtaaacaattcttcagctggtactgatgtcatac
ttcaaggcccagtttgctaccgccactagacaggaagaagagggggccca
gggaagccttacaagagacaggatgtacaaacaaaagagctcagggtcaa
gctgcaaagaactgaagttggcctagagaaggaagatccttgggagcaga
gggagggaaataaaacatgtcacagtccttttcatgataatgattctatt
gatctatgagcataagaggtctttcgacttgtattgtcagtctctccagg
attttaaatttttatgataaaggtgcctctgcctctcttgtcaaattatc
tgtacagtaactttgaggctactaggaatgggaatctattatttctcagt
gtatttgttactgagttataaaaaaaaagctactgatatttgtgagctgg
tttcacaatgtgttactctgctgaaagaaatacatcagacttggaaaaca
aaaatgaagttttctctcatatgtgaaacacacacacataacatgtggat
ttttttctcttttaatgtctccttttcttacaaactataaccagttctct
ttattccctgccagccctcctccctgcaaaccgtcctcccagtttcatcc
cagacccctttcaaatgtttctcccaaatgttcctccctcagtcccccaa
cactgtgcttaaacactcccttctccagttttcccaatcctagcagcttc
aaactataactgttttaggcttatctgctgagtcggctttcaaacaatag
ataaagagccatgtaccacaacacattcttgttctagcacagaagtcatg
tttagtgaagggacttctagctgttcttgagcatgccagttatgactttg
gcaaggctgtctttctccttttcctctctgccttggctgaaaaaacctta
gggtacatttctggagctagctctcaggcttattcttatgggcacttctc
ctcttggactgattaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_69117032_69118127
seq2: B6Ng01-111I22.b_47_1142

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAAGGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAAGGGGGTTATTTGATT  50

seq1  TTCTGAGGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAGTCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAGTCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATAGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATAGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200

seq1  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300

seq1  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA  350

seq1  TCCACTTAGATGAGAAGTGGGACTTTTAAAAGACAGAGTCTTCAAAACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAGATGAGAAGTGGGACTTTTAAAAGACAGAGTCTTCAAAACGT  400

seq1  TGGGCTGTATTTTATATTATTCTTTTGTTTTGTTTTGTTTTGTTTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTATTTTATATTATTCTTTTGTTTTGTTTTGTTTTGTTTTTTTA  450

seq1  ATCCTTAAGGAAGTTTTTAAAATTTATTTTTATTTATTTATTTATTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAAGGAAGTTTTTAAAATTTATTTTTATTTATTTATTTATTTTTA  500

seq1  CCAGTTTTTGTCGTCAACAATGATGAGATGTGGCCTTTCTGGGATCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTTGTCGTCAACAATGATGAGATGTGGCCTTTCTGGGATCCTTG  550

seq1  GTATGTGCGTGTTCTTGCAGCTACCATTTTTTGGTTCTGGGTGCACAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCGTGTTCTTGCAGCTACCATTTTTTGGTTCTGGGTGCACAAGT  600

seq1  AAGTACATTATCATGAACAAACTGAATTGTACTCTTGAAAGATACCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATTATCATGAACAAACTGAATTGTACTCTTGAAAGATACCCTTG  650

seq1  CTTTTCAGTATGTCTTAGCAAAATACTTCTAGGAAAGATTAGAGCATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGTATGTCTTAGCAAAATACTTCTAGGAAAGATTAGAGCATTAT  700

seq1  ATCAGTTACATGTTTTCAGTGTTGTGAGCAAATGCCCAATTAAAGCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTACATGTTTTCAGTGTTGTGAGCAAATGCCCAATTAAAGCTGTA  750

seq1  CAAAGTTTGAGAGTTCAGTCCATGACAGGGAAGGAATGGCCACAGGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTGAGAGTTCAGTCCATGACAGGGAAGGAATGGCCACAGGAGCT  800

seq1  CAAAGCAGTT-GGTCACATTATATCTATAGTCAGGAAGAAGTGAGAGATG  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGTTGGGTCACATTATATCTATAGTCAGGAAGAAGTGAGAGATG  850

seq1  AGTGCTTGTGCACAAGTCATTTTTTTAATGTAGTCTAAGACCCAAGGCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGTGCACAAGTCATTTTTTTAATGTAGTCTAAGACCCAAGGCCC  900

seq1  TCTGTGGCACACATGCAGGGAGTTACTCCTCTTTAGTTAAGTGTCTCTAG  949
      ||||||||||||||||| ||||||||||||| |||||| ||||| | |||
seq2  TCTGTGGCACACATGCA-GGAGTTACTCCTC-TTAGTT-AGTGT-TTTAG  946

seq1  AACATACTAACAGAAATACCCAGAGAT-GTGTATCCT-ACATGATTCCAA  997
      ||||||||||||||||||||||||||| ||||||||| |||||||| |||
seq2  AACATACTAACAGAAATACCCAGAGATGGTGTATCCTAACATGATT-CAA  995

seq1  ATCCCATCAATTGACAAT-AAAGATTAAACATCTTAGA-GCCTAGTGTTT  1045
      |||||||| ||||||||| ||||||||||||||||||| |||||||||||
seq2  ATCCCATC-ATTGACAATAAAAGATTAAACATCTTAGAGGCCTAGTGTTT  1044

seq1  ACATTCTCTACCTTTTTAG--TCATATTAACTTCTATGGGGAATCAT-GA  1092
      |||||||||| ||||||||  ||| |||||||||||||||||||||| ||
seq2  ACATTCTCTA-CTTTTTAGGCTCA-ATTAACTTCTATGGGGAATCATGGA  1092

seq1  ATTC  1096
      ||||
seq2  ATTC  1096

seq1: chrX_69225912_69227089
seq2: B6Ng01-111I22.g_68_1236 (reverse)

seq1  TTGGTAATCAGTCGCAAGAGGAGGAAGTGGCCAAATAAGGAAATAGACCT  50
      ||||||||||||| |||||||| |||||| ||  |||||  ||||  |||
seq2  TTGGTAATCAGTC-CAAGAGGA-GAAGTGCCC--ATAAG--AATAAGCCT  44

seq1  TGGAGGCTAGCTCCAGGAATGTAACCTAAGGGTTTTTTTCAG-CAAGGCA  99
        || ||||||||||| |||||| |||||||  ||||||||| |||||||
seq2  GAGA-GCTAGCTCCAGAAATGTACCCTAAGG--TTTTTTCAGCCAAGGCA  91

seq1  GAG-GGAAAAGGGAAGAAGGACAAGGCCTGCCAGAGTCATACTTGGCATG  148
      ||| ||||||||  |||| ||| || | ||||| |||||||  |||||||
seq2  GAGAGGAAAAGG--AGAAAGAC-AGCCTTGCCAAAGTCATAACTGGCATG  138

seq1  CTC-AGGACAGCTAG-AGTCCCTTCACTAAACATGACTTCTGTGCTAGGA  196
      ||| || |||||||| |||||||||||||||||||||||||||||||| |
seq2  CTCAAGAACAGCTAGAAGTCCCTTCACTAAACATGACTTCTGTGCTAGAA  188

seq1  ACAGAATGTGTTGTGTTACATGGCTCTTTATCTATTGTTTGAAAGCCGAA  246
        ||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  CAAGAATGTGTTGTGGTACATGGCTCTTTATCTATTGTTTGAAAGCCG-A  237

seq1  CTCAGCAGAT-AGGCTAAAACAGTTATAGTTTGAAGCTGCTAGGATTGGG  295
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGATAAGCCTAAAACAGTTATAGTTTGAAGCTGCTAGGATTGGG  287

seq1  AAAACTGGGAGAAGGGAGTGTTTAAGCACAGTGTTGGGGGACTGAGGGAG  345
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACT-GGAGAAGGGAGTGTTTAAGCACAGTGTTGGGGGACTGAGGGAG  336

seq1  GAACATTTGGGAGAAACATTTG-AAGGGGTCTGGGATGGAAACTGGGAGG  394
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  GAACATTTGGGAGAAACATTTGAAAGGGGTCTGGGAT-GAAACTGGGAGG  385

seq1  ACGGTTTGCAGGGAGGAGGGCTGGCAGGGAATAAAGAGAACTGGTTATAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTTGCAGGGAGGAGGGCTGGCAGGGAATAAAGAGAACTGGTTATAG  435

seq1  TTTGTAAGAAAAGGAGACATTAAAAGAGAAAAAAATCCACATGTTATGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGAAAAGGAGACATTAAAAGAGAAAAAAATCCACATGTTATGTG  485

seq1  TGTGTGTTTCACATATGAGAGAAAACTTCATTTTTGTTTTCCAAGTCTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTCACATATGAGAGAAAACTTCATTTTTGTTTTCCAAGTCTGA  535

seq1  TGTATTTCTTTCAGCAGAGTAACACATTGTGAAACCAGCTCACAAATATC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCTTTCAGCAGAGTAACACATTGTGAAACCAGCTCACAAATATC  585

seq1  AGTAGCTTTTTTTTTATAACTCAGTAACAAATACACTGAGAAATAATAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTTTTTTTTATAACTCAGTAACAAATACACTGAGAAATAATAGA  635

seq1  TTCCCATTCCTAGTAGCCTCAAAGTTACTGTACAGATAATTTGACAAGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTCCTAGTAGCCTCAAAGTTACTGTACAGATAATTTGACAAGAG  685

seq1  AGGCAGAGGCACCTTTATCATAAAAATTTAAAATCCTGGAGAGACTGACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCACCTTTATCATAAAAATTTAAAATCCTGGAGAGACTGACA  735

seq1  ATACAAGTCGAAAGACCTCTTATGCTCATAGATCAATAGAATCATTATCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTCGAAAGACCTCTTATGCTCATAGATCAATAGAATCATTATCA  785

seq1  TGAAAAGGACTGTGACATGTTTTATTTCCCTCCCTCTGCTCCCAAGGATC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGACTGTGACATGTTTTATTTCCCTCCCTCTGCTCCCAAGGATC  835

seq1  TTCCTTCTCTAGGCCAACTTCAGTTCTTTGCAGCTTGACCCTGAGCTCTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCTAGGCCAACTTCAGTTCTTTGCAGCTTGACCCTGAGCTCTT  885

seq1  TTGTTTGTACATCCTGTCTCTTGTAAGGCTTCCCTGGGCCCCCTCTTCTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTACATCCTGTCTCTTGTAAGGCTTCCCTGGGCCCCCTCTTCTT  935

seq1  CCTGTCTAGTGGCGGTAGCAAACTGGGCCTTGAAGTATGACATCAGTACC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTAGTGGCGGTAGCAAACTGGGCCTTGAAGTATGACATCAGTACC  985

seq1  AGCTGAAGAATTGTTTACTGGTCTATAAACTGCATTAGCTTCCAGGATGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGAATTGTTTACTGGTCTATAAACTGCATTAGCTTCCAGGATGG  1035

seq1  TATGATCTGCTAGATTCCTTTGCCTAAGCTTGGTGATGTAGCTGTCTAAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCTGCTAGATTCCTTTGCCTAAGCTTGGTGATGTAGCTGTCTAAG  1085

seq1  ATGGGCTGAGGGTAGGCCTTGGAGGCAGGATGTCATTTCATTACATGGCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGAGGGTAGGCCTTGGAGGCAGGATGTCATTTCATTACATGGCA  1135

seq1  TTTGGGATTTCTCTCAAGACCTTTATCTGAATTC  1178
      ||||||||||||||||||||||||||||||||||
seq2  TTTGGGATTTCTCTCAAGACCTTTATCTGAATTC  1169