BAC Information

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BAC

Clone NameB6Ng01-113K13
ChromosomeX (Build37)
Map Location 104,335,351 - 104,493,246
singlet/doubletdoublet
Overlap geneA630033H20Rik, Gpr174, LOC668502, LOC622613
Upstream geneTlr13, LOC671297, Pgk1, Taf9b, 5031408O05Rik, EG333563, LOC622494, Gm784, Cysltr1, EG331493, LOC668490, LOC100042772, LOC100043263, Zcchc5, Gpr23, P2ry10
Downstream geneLOC385404, Itm2a, 4933401B06Rik, Tbx22, 2610002M06Rik, Gm732
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113K13.bB6Ng01-113K13.g
ACCDH919396DH919397
length1,0141,043
definitionDH919396|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K13, 5' end.DH919397|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,335,351 - 104,336,371)(104,492,208 - 104,493,246)
sequence
gaattctctccctggaccatggacacaatgcatcattttagacaaagtgg
ctttaggttatggagcaaataaataatcttggaaatgtttatgttctgtg
tctaatctaagatgcagtcaagtttcttactgatggtgttcattaaaata
gaaacaaacccaacagaatattaaaaacattctcaggaccaggcactttg
gtttttgtcattattatagcccagaagagaggggtttataggtacttgtt
taatgaatacttgaatagattagtggtgttttgttgctttttataatacc
atcgtccaacccaaaatatagggtatgttcatgctctttcttccttagct
tccaatataaattaaacataaaatctgtttctttttttcgtgacatcatt
tttttttagatttatttatttattatatgtaagtacactgtagctgtctt
cagacactccagaagagggagtcagatctcattacagatggttgtgagcc
accatgtggttgctgggatttgaactcgggacctttggaagagcagtcag
gtgctcttacccactgagccatctcaccagcccctcgtgacatcttttta
attttaagtatttaaaatatattatgcatataagtgtttgcctgcagatg
tgcatgggtaaaacatgcatacctaccacccatgaaagcaagaagagggt
gtcaaataacctagaactaaaactagatgattgtaagctacaatgcagat
gtagcctgaaccatttttctaaccacataacatacttttatctcattctt
tgtttttgaaccacttagcctatctgcctgtatctccaagaaaatgaaat
tatggttatgctttttatcatcgtatacataattttttgaactcatttgc
tgataggcagtagtagactgtaggattcaagaatcctccatcttaccatc
tatgttgatgatatgtaagtacttttaaattccagccttgagactttaaa
tttcagcattcttt
gaattctaaacccttgatcttggtcaaggacgcccttggactgttggaac
actggcgaaaggctttagccatgtcagagcacttataatagaaaaatagt
gaaagagagcacgtggatccatactctagactagcacggtaatggaactc
gggaatgaaaaattaatgtatgggtagagaacactagactccaggaggag
agcttccttgaaactcttttgcctcatgagtgacttttaagcctttcgac
ttgtccagttgactcgaccggagagcgtaacaaacaaggacttgagtgtg
gcttgtacctatagatgaatcaaatgtttaagagtaggaagaaatgaata
tagtcaacaataaagaagattgtggtttctgcaaaattaaatagtagtta
aagctaattaggccctattgaagaaattgtctgtaaagaaaagtttgctc
aagtagtctcttccctcctccacacagaccacattcttcaaaaccaagga
acatgtaattttaaacaattacattttttacaagtttatctctcaccttt
ctgtcaaccattacctatgttaataacagaatatggttttgaaggtagtg
aagttacttcttgtatggtttcacaggattacaggaaagtttttctaagt
ggtttgagggtactcgaagcatgaggcaggttatgtatttataatttcat
tattttttcagatctacccaagcataagatgtttcacttaaaaaaaagaa
aacagaaaaaaaaccttttttatttttttttaagagcatccttagagtct
ctttctgcaaccattaaggtgtgtaatttataactatttgggtatgacta
aagctacttaggattcaaagacaatctagggaaataaacaagatgggata
gcaaattgctaatttaagcaaacaaaggtctagagtgagacctgagtttt
gatacttagacgggacaactcaatcttggtcttttaaaattgtatcctcc
acttcagtaattaaaaggaattataagaccttaagaaacataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_104335351_104336371
seq2: B6Ng01-113K13.b_48_1061

seq1  GAATTCTCTCCCTGGACCATGGACACAATGCATCATTTTAGACAAAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCCTGGACCATGGACACAATGCATCATTTTAGACAAAGTGG  50

seq1  CTTTAGGTTATGGAGCAAATAAATAATCTTGGAAATGTTTATGTTCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGTTATGGAGCAAATAAATAATCTTGGAAATGTTTATGTTCTGTG  100

seq1  TCTAATCTAAGATGCAGTCAAGTTTCTTACTGATGGTGTTCATTAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTAAGATGCAGTCAAGTTTCTTACTGATGGTGTTCATTAAAATA  150

seq1  GAAACAAACCCAACAGAATATTAAAAACATTCTCAGGACCAGGCACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACCCAACAGAATATTAAAAACATTCTCAGGACCAGGCACTTTG  200

seq1  GTTTTTGTCATTATTATAGCCCAGAAGAGAGGGGTTTATAGGTACTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTCATTATTATAGCCCAGAAGAGAGGGGTTTATAGGTACTTGTT  250

seq1  TAATGAATACTTGAATAGATTAGTGGTGTTTTGTTGCTTTTTATAATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATACTTGAATAGATTAGTGGTGTTTTGTTGCTTTTTATAATACC  300

seq1  ATCGTCCAACCCAAAATATAGGGTATGTTCATGCTCTTTCTTCCTTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCCAACCCAAAATATAGGGTATGTTCATGCTCTTTCTTCCTTAGCT  350

seq1  TCCAATATAAATTAAACATAAAATCTGTTTCTTTTTTTCGTGACATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATAAATTAAACATAAAATCTGTTTCTTTTTTTCGTGACATCATT  400

seq1  TTTTTTTAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTT  450

seq1  CAGACACTCCAGAAGAGGGAGTCAGATCTCATTACAGATGGTTGTGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTCCAGAAGAGGGAGTCAGATCTCATTACAGATGGTTGTGAGCC  500

seq1  ACCATGTGGTTGCTGGGATTTGAACTCGGGACCTTTGGAAGAGCAGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGTTGCTGGGATTTGAACTCGGGACCTTTGGAAGAGCAGTCAG  550

seq1  GTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTCGTGACATCTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTCGTGACATCTTTTTA  600

seq1  ATTTTAAGTATTTAAAATATATTATGCATATAAGTGTTTGCCTGCAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTATTTAAAATATATTATGCATATAAGTGTTTGCCTGCAGATG  650

seq1  TGCATGGGTAAAACATGCATACCTACCACCCATGAAAGCAAGAAGAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGGTAAAACATGCATACCTACCACCCATGAAAGCAAGAAGAGGGT  700

seq1  GTCAAATAACCTAGAACTAAAACTAGATGATTGTAAGCTACAATGCAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATAACCTAGAACTAAAACTAGATGATTGTAAGCTACAATGCAGAT  750

seq1  GTAGCCTGAACCATTTTTCTAACCACATAACATACTTTAATCTCATTCTT  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTAGCCTGAACCATTTTTCTAACCACATAACATACTTTTATCTCATTCTT  800

seq1  TGTTTTTGCAACCACTTAGCCTATCTGCCTGTATCTCCAAGAAAATGAAA  850
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTG-AACCACTTAGCCTATCTGCCTGTATCTCCAAGAAAATGAAA  849

seq1  TTATGGTTATGCTTTTTATCATCGTATACATAATTTTTTGAACTCATTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTATGCTTTTTATCATCGTATACATAATTTTTTGAACTCATTTG  899

seq1  CTGATAGGCAGTAGTAGACTGTAGGAATTCAAGAATCCTCCATCTTACCA  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGATAGGCAGTAGTAGACTGTAGG-ATTCAAGAATCCTCCATCTTACCA  948

seq1  TCATATGTTGATGATATGTAAGTACTTTTATATTACAGGCTTTGAGACTT  1000
      || ||||||||||||||||||||||||||| ||| || || |||||||||
seq2  TC-TATGTTGATGATATGTAAGTACTTTTAAATTCCA-GCCTTGAGACTT  996

seq1  TTAAATTTTCAGTCATTCTTT  1021
      |  || |||||| ||||||||
seq2  T--AAATTTCAG-CATTCTTT  1014

seq1: chrX_104492208_104493246
seq2: B6Ng01-113K13.g_71_1113 (reverse)

seq1  TTATGTTTCTTAAGGTC-TACTATTCCTTTTAATCTACTGAAGTGGTGGA  49
      ||||||||||||||||| ||  |||||||||||| ||||||||||| |||
seq2  TTATGTTTCTTAAGGTCTTATAATTCCTTTTAAT-TACTGAAGTGGAGGA  49

seq1  TTCCATTCTCAAAGACCAAGA-TGAGTTGTCCCGTCTATGTTATCATAAC  98
      | | ||| | ||||||||||| |||||||||||||||| | ||||| |||
seq2  TACAATTTTAAAAGACCAAGATTGAGTTGTCCCGTCTAAG-TATCAAAAC  98

seq1  TCAGGTCTC-CTCTAGGCCTTTGTTTGCTTAATTTAGCAATTTGCTGT-C  146
      ||||||||| |||||| ||||||||||||||| ||||||||||||| | |
seq2  TCAGGTCTCACTCTAGACCTTTGTTTGCTTAAATTAGCAATTTGCTATCC  148

seq1  CATCTTGTTTATTTCCCTAGATTGTCTTTGAATCCTAAGTAGCTTTAGTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTTTATTTCCCTAGATTGTCTTTGAATCCTAAGTAGCTTTAGTC  198

seq1  ATAACCAAATAGTTATAAATTACACACCTTAATGGTTGCAGAAAGAGACT  246
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAAATAGTTATAAATTACACACCTTAATGGTTGCAGAAAGAGACT  248

seq1  CTAAGGATGCTCTTAAAAAAAAAT-AAAAAGGTTTTTTTTCTGTTTTCTT  295
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTAAGGATGCTCTTAAAAAAAAATAAAAAAGGTTTTTTTTCTGTTTTCTT  298

seq1  TTTTTTAAGTGAAACATCTTATGCTTGGGTAGATCTGAAAAAATAATGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTGAAACATCTTATGCTTGGGTAGATCTGAAAAAATAATGAA  348

seq1  ATTATAAATACATAACCTGCCTCATGCTTCGAGTACCCTCAAACCACTTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAATACATAACCTGCCTCATGCTTCGAGTACCCTCAAACCACTTA  398

seq1  G-AAAACTTTCCTGTAATCCTGTGAAACCATACAAGAAGTAACTTCACTA  444
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTTTCCTGTAATCCTGTGAAACCATACAAGAAGTAACTTCACTA  448

seq1  CCTTCAAAACCATATTCTGTTATTAACATAGGTAATGGTTGACAGAAAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAACCATATTCTGTTATTAACATAGGTAATGGTTGACAGAAAGG  498

seq1  TGAGAGATAAACTTGTAAAAAATGTAATTGTTTAAAATTACATGTTCCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATAAACTTGTAAAAAATGTAATTGTTTAAAATTACATGTTCCTT  548

seq1  GGTTTTGAAGAATGTGGTCTGTGTGGAGGAGGGAAGAGACTACTTGAGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGAAGAATGTGGTCTGTGTGGAGGAGGGAAGAGACTACTTGAGCA  598

seq1  AACTTTTCTTTACAGACAATTTCTTCAATAGGGCCTAATTAGCTTTAACT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTTTACAGACAATTTCTTCAATAGGGCCTAATTAGCTTTAACT  648

seq1  ACTATTTAATTTTGCAGAAACCACAATCTTCTTTATTGTTGACTATATTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTAATTTTGCAGAAACCACAATCTTCTTTATTGTTGACTATATTC  698

seq1  ATTTCTTCCTACTCTTAAACATTTGATTCATCTATAGGTACAAGCCACAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCTACTCTTAAACATTTGATTCATCTATAGGTACAAGCCACAC  748

seq1  TCAAGTCCTTGTTTGTTACGCTCTCCGGTCGAGTCAACTGGACAAGTCGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCTTGTTTGTTACGCTCTCCGGTCGAGTCAACTGGACAAGTCGA  798

seq1  AAGGCTTAAAAGTCACTCATGAGGCAAAAGAGTTTCAAGGAAGCTCTCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTAAAAGTCACTCATGAGGCAAAAGAGTTTCAAGGAAGCTCTCCT  848

seq1  CCTGGAGTCTAGTGTTCTCTACCCATACATTAATTTTTCATTCCCGAGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTCTAGTGTTCTCTACCCATACATTAATTTTTCATTCCCGAGTT  898

seq1  CCATTACCGTGCTAGTCTAGAGTATGGATCCACGTGCTCTCTTTCACTAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACCGTGCTAGTCTAGAGTATGGATCCACGTGCTCTCTTTCACTAT  948

seq1  TTTTCTATTATAAGTGCTCTGACATGGCTAAAGCCTTTCGCCAGTGTTCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATTATAAGTGCTCTGACATGGCTAAAGCCTTTCGCCAGTGTTCC  998

seq1  AACAGTCCAAGGGCGTCCTTGACCAAGATCAAGGGTTTAGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCAAGGGCGTCCTTGACCAAGATCAAGGGTTTAGAATTC  1043