BAC Information

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BAC

Clone NameB6Ng01-114I21
ChromosomeX (Build37)
Map Location 163,978,884 - 164,195,154
singlet/doubletdoublet
Overlap geneFrmpd4
Upstream geneEgfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566, Msl31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114I21.bB6Ng01-114I21.g
ACCDH920047DH920048
length1,1371,056
definitionDH920047|Mus musculus domesticus DNA, BAC clone: B6Ng01-114I21, 5' end.DH920048|Mus musculus domesticus DNA, BAC clone: B6Ng01-114I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,978,884 - 163,980,034)(164,194,085 - 164,195,154)
sequence
gaattccacgaagataccaactataaggaaaccttaccaaattgaactcc
cctgtttgaaaacaaggaacattaccaacctgaaagattcatttgtagtt
caatggtatttctaaaacagaaaactttcagtatgttatgtatttggatt
tcttgttcagttttttaatatttccactagaagctatctataaaaaattc
cttttgacagtcagggaagtttaatattaattgagtaaatcccctacagt
tgataaaaatataaatataagatagtataaatataaataaatataatatc
atgtcgagataaaaacaggccatttgtgcatgttaaattggatctcatta
agaggtgcatgtgagtagcaatccaggagctattacagttggctatgcaa
atgtctcaagcaaaaactctcagaagtatggcatggctggtacacaaaaa
gaccctacctatatagagcctgctaagaatggctgaggacgagctggagc
tagcagagtgctatggagagacttacctacaggaaagcaatgcaaatgca
tctggagtgatattaccaagtattagttaccgttttcatcattgtaacaa
aataagaagcaacctaaagaaggaaaggtcatcttggcttatgtttcaga
ggatactgtccaccatgggaaaagcatgatgtcaggaattgcagtgagaa
tgtgctcaactctggggatatcaggaagaagagtgagggcaaggctgtgc
tctgcaagctttcttccttttcctattaggttcaggccacaggaatgtag
ctgcataatctcatggcattttccatcctgttaattctttctgaaaataa
gtccttacagaaatacccaaaggtatatagcatggagtgtttttattttt
taattccatcaatctgacaaagaattaaatatcacattagtaattgttaa
ataacttagtgaaagtctgaatagcagtcctccaaatgaacccttcgtcg
tagcctttcttcctttttgtttatcattgatgaaatgctaaagcaaacat
ttctcttaaattgattttatttcaattttttaaacctctaagaagagatg
gatatcagtctttttctaacgtcgaaggaactaatag
gaattctctaggagtgatcagagaggttccaaaatagaacctttgggcag
gctacatataaggaaagataagaacaaaaaaaaaggaagaaaagggggtg
aagtggagggatagagacaggagacagaggaagggaaggagatggcttaa
agaggtagcttaagttggtagagtggctgcctagcatatacagagccctg
gcttctatctcaagcaccccataaacagcacatggttgcacatgcagtat
tctcagtgcttgagaggaaaaggtaagaggatcagaagttcaaagtcatc
ttcagtcacatagcaagttcaaggtcatcttcaagcacatagcaagttcg
agaccaacttgggatacattaaacccagtcccagtaaagaacatagagtg
ggaaataaaaggacatgaaaagaggaaagttaaatctccagaaggctttg
catttttgactcttcactttcccagaagagatttttttccccacctatat
tagccactggagatcatgggcagaaatcctgtggaatataaatagcatct
gaggcttttgtaccttcacttaaagaaatatattatgtttccaagaggca
ttgctccttccttttcaactcattctctagtgccttagatgagacaactc
tctgttcactccttctttttactaaaatgagacagacctggagcaagttg
tcttgtgcattatgatggatgactggcattttttttctatgaataaggca
aatggccttaatgattttaggagtccatgtcagaaacacttatcacagca
gtaacactaatatgaattggcagcacaaaaatgttattcccttagtgtat
aggattgccacggaccaccccagtcaggtgtggggttccctgggacaggg
tcctcgaaggctaggtgggtaaggattcagaggtgacacgagagagaaac
aagaggcagtttgaatctgaggtggtttgcagcttcaatcaggtttttat
cattaacaacaatatttcactttgagatgttcactgagcagtaccataag
aacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_163978884_163980034
seq2: B6Ng01-114I21.b_46_1182

seq1  GAATTCCACGAAGATACCAACTATAAGGAAACCTTACCAAATTGAACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGAAGATACCAACTATAAGGAAACCTTACCAAATTGAACTCC  50

seq1  CCTGTTTGAAAACAAGGAACATTACCAACCTGAAAGATTCATTTGTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTGAAAACAAGGAACATTACCAACCTGAAAGATTCATTTGTAGTT  100

seq1  CAATGGTATTTCTAAAACAGAAAACTTTCAGTATGTTATGTATTTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTATTTCTAAAACAGAAAACTTTCAGTATGTTATGTATTTGGATT  150

seq1  TCTTGTTCAGTTTTTTAATATTTCCACTAGAAGCTATCTATAAAAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCAGTTTTTTAATATTTCCACTAGAAGCTATCTATAAAAAATTC  200

seq1  CTTTTGACAGTCAGGGAAGTTTAATATTAATTGAGTAAATCCCCTACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACAGTCAGGGAAGTTTAATATTAATTGAGTAAATCCCCTACAGT  250

seq1  TGATAAAAATATAAATATAAGATAGTATAAATATAAATAAATATAATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAATATAAATATAAGATAGTATAAATATAAATAAATATAATATC  300

seq1  ATGTCGAGATAAAAACAGGCCATTTGTGCATGTTAAATTGGATCTCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGAGATAAAAACAGGCCATTTGTGCATGTTAAATTGGATCTCATTA  350

seq1  AGAGGTGCATGTGAGTAGCAATCCAGGAGCTATTACAGTTGGCTATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGCATGTGAGTAGCAATCCAGGAGCTATTACAGTTGGCTATGCAA  400

seq1  ATGTCTCAAGCAAAAACTCTCAGAAGTATGGCATGGCTGGTACACAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCAAGCAAAAACTCTCAGAAGTATGGCATGGCTGGTACACAAAAA  450

seq1  GACCCTACCTATATAGAGCCTGCTAAGAATGGCTGAGGACGAGCTGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTACCTATATAGAGCCTGCTAAGAATGGCTGAGGACGAGCTGGAGC  500

seq1  TAGCAGAGTGCTATGGAGAGACTTACCTACAGGAAAGCAATGCAAATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGTGCTATGGAGAGACTTACCTACAGGAAAGCAATGCAAATGCA  550

seq1  TCTGGAGTGATATTACCAAGTATTAGTTACCGTTTTCATCATTGTAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTGATATTACCAAGTATTAGTTACCGTTTTCATCATTGTAACAA  600

seq1  AATAAGAAGCAACCTAAAGAAGGAAAGGTCATCTTGGCTTATGTTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAAGCAACCTAAAGAAGGAAAGGTCATCTTGGCTTATGTTTCAGA  650

seq1  GGATACTGTCCACCATGGGAAAAGCATGATGTCAGGAATTGCAGTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTGTCCACCATGGGAAAAGCATGATGTCAGGAATTGCAGTGAGAA  700

seq1  TGTGCTCAACTCTGGGGATATCAGGAAGAAGAGTGAGGGCAAGGCTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAACTCTGGGGATATCAGGAAGAAGAGTGAGGGCAAGGCTGTGC  750

seq1  TCTGCAAGCTTTCTTCCTTTTCCTATTAGGTTCAGGCCACAGGAATGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGCTTTCTTCCTTTTCCTATTAGGTTCAGGCCACAGGAATGTAG  800

seq1  CTGCATAATCTCATGGCATTTTCCATCCTGTTAATTCTTTCTGAAAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAATCTCATGGCATTTTCCATCCTGTTAATTCTTTCTGAAAATAA  850

seq1  GTCCTTACAGAAATACCCAAAGGTATATAGCATGGAGTGTTTTTATTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTACAGAAATACCCAAAGGTATATAGCATGGAGTGTTTTTATTTTT  900

seq1  TAATTCCATCAATCTGACAAAAGAAATTAAATATCACATTAGTAATTGTT  950
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  TAATTCCATCAATCTGACAAA--GAATTAAATATCACATTAGTAATTGTT  948

seq1  AAATAACTTAGTGAAAGTCTGAATAGCAGGTCCTCCAAATGAACCCTTCG  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAATAACTTAGTGAAAGTCTGAATAGCA-GTCCTCCAAATGAACCCTTCG  997

seq1  TCGTAGCCTTTCTTCCTTTTTG-TTATCATTGATGAAATTGCTAAAGCAA  1049
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  TCGTAGCCTTTCTTCCTTTTTGTTTATCATTGATGAAA-TGCTAAAGCAA  1046

seq1  ACATTTCTCTTTTAAATTGTATTTTATTTCTATTTTTTTAAAACCTTCTA  1099
      |||||||||  |||||||| |||||||||| |||||||  ||||| ||||
seq2  ACATTTCTC--TTAAATTG-ATTTTATTTCAATTTTTT--AAACC-TCTA  1090

seq1  AATAGAGATGGAATTATCAGTCTTTTTCATAAACGTCAGAAGGAACTAAT  1149
      |  |||||||||  ||||||||||||||   |||||| ||||||||||||
seq2  AGAAGAGATGGA--TATCAGTCTTTTTC--TAACGTC-GAAGGAACTAAT  1135

seq1  AG  1151
      ||
seq2  AG  1137

seq1: chrX_164194085_164195154
seq2: B6Ng01-114I21.g_67_1122 (reverse)

seq1  TCTGTTCTATGTGTTACTGCTTCATTGAACACATCTCAGAGTTGTAATAA  50
      |||||||| | || |||||| ||| |||  |||||||| || || ||| |
seq2  TCTGTTCT-TATGGTACTGC-TCAGTGA--ACATCTCAAAG-TGAAAT-A  44

seq1  TTGTTTGTTAATGTATAAAAACCCTTGATTGAAAGCTGCAAAACACACTC  100
      ||| ||||||||| |||||||||  |||||| |||||||||| ||| |||
seq2  TTG-TTGTTAATG-ATAAAAACC--TGATTG-AAGCTGCAAACCAC-CTC  88

seq1  AGATTCAAACTGCCTCTGTGTTTCTCTCTCGTTGTCACCTCTGAATCCTT  150
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  AGATTCAAACTGCCTCT-TGTTTCTCTCTCG-TGTCACCTCTGAATCCTT  136

seq1  ACCCACCTAGCCTTCGAGGACCCTGTCCCAGGGAACCCCACACCTGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCTAGCCTTCGAGGACCCTGTCCCAGGGAACCCCACACCTGACTG  186

seq1  GGGTGGTCCGTGGCAATCCTATACACTAAGGGAATAACATTTTTGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTCCGTGGCAATCCTATACACTAAGGGAATAACATTTTTGTGCTG  236

seq1  CCAATTCATATTAGTGTTACTGCTGTGATAAGTGTTTCTGACATGGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCATATTAGTGTTACTGCTGTGATAAGTGTTTCTGACATGGACTC  286

seq1  CTAAAATCATTAAGGCCATTTGCCTTATTCATAGAAAAAAAATGCCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCATTAAGGCCATTTGCCTTATTCATAGAAAAAAAATGCCAGTC  336

seq1  ATCCATCATAATGCACAAGACAACTTGCTCCAGGTCTGTCTCATTTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCATAATGCACAAGACAACTTGCTCCAGGTCTGTCTCATTTTAGT  386

seq1  AAAAAGAAGGAGTGAACAGAGAGTTGTCTCATCTAAGGCACTAGAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGGAGTGAACAGAGAGTTGTCTCATCTAAGGCACTAGAGAATG  436

seq1  AGTTGAAAAGGAAGGAGCAATGCCTCTTGGAAACATAATATATTTCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAAAGGAAGGAGCAATGCCTCTTGGAAACATAATATATTTCTTTA  486

seq1  AGTGAAGGTACAAAAGCCTCAGATGCTATTTATATTCCACAGGATTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGGTACAAAAGCCTCAGATGCTATTTATATTCCACAGGATTTCTG  536

seq1  CCCATGATCTCCAGTGGCTAATATAGGTGGGGAAAAAAATCTCTTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGATCTCCAGTGGCTAATATAGGTGGGGAAAAAAATCTCTTCTGGG  586

seq1  AAAGTGAAGAGTCAAAAATGCAAAGCCTTCTGGAGATTTAACTTTCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAGAGTCAAAAATGCAAAGCCTTCTGGAGATTTAACTTTCCTCT  636

seq1  TTTCATGTCCTTTTATTTCCCACTCTATGTTCTTTACTGGGACTGGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTCCTTTTATTTCCCACTCTATGTTCTTTACTGGGACTGGGTTT  686

seq1  AATGTATCCCAAGTTGGTCTCGAACTTGCTATGTGCTTGAAGATGACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCCCAAGTTGGTCTCGAACTTGCTATGTGCTTGAAGATGACCTT  736

seq1  GAACTTGCTATGTGACTGAAGATGACTTTGAACTTCTGATCCTCTTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGCTATGTGACTGAAGATGACTTTGAACTTCTGATCCTCTTACCT  786

seq1  TTTCCTCTCAAGCACTGAGAATACTGCATGTGCAACCATGTGCTGTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCAAGCACTGAGAATACTGCATGTGCAACCATGTGCTGTTTAT  836

seq1  GGGGTGCTTGAGATAGAAGCCAGGGCTCTGTATATGCTAGGCAGCCACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCTTGAGATAGAAGCCAGGGCTCTGTATATGCTAGGCAGCCACTC  886

seq1  TACCAACTTAAGCTACCTCTTTAAGCCATCTCCTTCCCTTCCTCTGTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTTAAGCTACCTCTTTAAGCCATCTCCTTCCCTTCCTCTGTCTC  936

seq1  CTGTCTCTATCCCTCCACTTCACCCCCTTTTCTTCCTTTTTTTTTGTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTATCCCTCCACTTCACCCCCTTTTCTTCCTTTTTTTTTGTTCT  986

seq1  TATCTTTCCTTATATGTAGCCTGCCCAAAGGTTCTATTTTGGAACCTCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCCTTATATGTAGCCTGCCCAAAGGTTCTATTTTGGAACCTCTC  1036

seq1  TGATCACTCCTAGAGAATTC  1070
      ||||||||||||||||||||
seq2  TGATCACTCCTAGAGAATTC  1056