BAC Information

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BAC

Clone NameB6Ng01-116B17
ChromosomeX (Build37)
Map Location 37,802,628 - 37,803,782
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039715, EG636756, EG636766, EG245391, LOC100039769
Downstream geneLOC385344, Gria3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116B17.bB6Ng01-116B17.g
ACCDH921191DH921192
length1,1871,147
definitionDH921191|Mus musculus domesticus DNA, BAC clone: B6Ng01-116B17, 5' end.DH921192|Mus musculus domesticus DNA, BAC clone: B6Ng01-116B17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacagttaccctgatacctaaaccacacaaaaatccaacaaagag
aacttcagaccaattttgctaataaatagtgatgcaaaaatactcaataa
aatttgataaaccaaatccaagagcacttcagagtcatcattcagcataa
tcccgtaggcttcatccctgagatgcagggattgtataaaataaaaaaaa
attctattaatgtaatctactatataaacaaactcaaagaaaaatacatg
gtcatctcattattcactgaaaaagcatttgacaaaatacagcacccttt
catgttaaaagctttggagagaccaggaatccaagacccttagctaagca
taataaaagtaatatacaaaagccatcaggcagtatcaaattaaaaagtg
agatatttgaagcaatcacactaaaatcagggaaaagccaagtcggccca
ctttctctttatctatcaatatagtactcagagttctagctggagcaata
cgacaacaacgggagataaagaagatacaaattggaaaagaagaattcaa
ggtaatactatttgaagatgatagtatagtatgcataagaggcccaaaaa
aatctaccagagaacacacagagatgaaaaacaacttaaacaaagtggct
ggatgtaaaattaacttaaagaaatcagtagccttcttttatacaaatga
taaacaggctgagaaagaaattaggcaaacaacagccttaacaatatcca
caaatagtattaaatatcttggtgtaactcttctttttaaattgggtatt
catttcttttacatttctaatgctatcccaaaagtcccccacacactccc
ccacaaactcccccaatcacccactcccacttcttggccctggcattccc
ctttagtttgcatgaccaatgggcctctctttccactgatggccgactag
gccatcttctgattcatatgcagctagagacacaagctcgggtgggggta
ttggtagttcatatgttgttccacctggtgcatccatgctgactgtgagc
attcacttcgtgtttgccaggccctgcatgtctcacaagaacgcatatct
ggtatttcagcaatcttgctagtgtatgcatgtgtcaagttggagactga
tatggaatgaatcctgatggcatacagaatggccaat
gaattcatctatcgacggacacatagattgattccatatctcagaatttc
tgtatagttctgcattaagcacgggtgtgctggtgggcattctaatttct
tatttcatatcatttgaatttatctgcaataatgagagtgctgaaccatg
acattggacttttagttgctttgaagaaactccacatgttttaacatatc
tgtactaatttactaatagtaaataacagctttacgtttaccagaaactt
ttgttctcatgaatttctattctagctataaagtatcaccttactgtgtt
ctgaataagtaatttcccagcagttacaattactggatattttggtgtat
catttggtcatttctacagtatttaaaaaatatatttcatgtatatagtc
tgcatatatgtgaactatttttctggatgctgaataactttcctgatagt
tttaatattaactgcttactaaaagcaaagctagcacatatttcttctat
tcagtaattttccctacatgctattactttctttcctgttgagaagattt
atagttttatataatcctatttatgtatcatggtttttacctttgaataa
aatcctgaaaatcacccagaacaatgtcctggttttgtttatgttttgtt
atgcagtatggcactatctggtcttaacaatatcttccatccattttggt
tgatttatatatataatgagacactaaatataagagtttaattttatgct
tctatatatagtatccatattttccattattatttgtgtatttatttatg
aaggttttcataaattctgggctggattcatatatgccaaccttgttttg
aaacttgctgtgtaacaaaagatggctacttgcttacattgcaggttatg
tctctatgaacagcttctaactttattgaaaaaatataatatttagcatt
tattatgcatatattgtaggtttatccctctgtgaacagcttctaacctt
ttattgaaaaatctaaaattttgcatttattatgcctccggggtggtgta
ataattaaattttcctgcattggcctttatttccacccttttatacttag
attgaagcagcatttttcttgtacttgtatggtaataacctgttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_37802628_37803782
seq2: B6Ng01-116B17.g_67_1213 (reverse)

seq1  TCTAACATGTTTATTAACCATACCAGTACAGAAAAAATGCTGCTTCATTA  50
      ||||||| | ||||| ||||||| ||||||  |||||||||||||||  |
seq2  TCTAACA-GGTTATT-ACCATACAAGTACAAGAAAAATGCTGCTTCA--A  46

seq1  TCTAAGTATAAA--GGTTGAAATTAAAGCCATATGCAAGAAAATTTAATT  98
      ||||||||||||  ||| ||||| || |||| ||||| ||||||||||||
seq2  TCTAAGTATAAAAGGGTGGAAATAAAGGCCA-ATGCAGGAAAATTTAATT  95

seq1  A-TACAACA-CACGGAAGCATAATAAAATGCAAAAATATTAGATTTTTTT  146
      | |||| || | |||| ||||||| |||||| ||||| |||||  |||||
seq2  ATTACACCACCCCGGAGGCATAAT-AAATGC-AAAATTTTAGA--TTTTT  141

seq1  CAAT-AAAGGTTAGAAGCTGTTCACAGAGGGATAAACCTACAATATATGC  195
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAGGTTAGAAGCTGTTCACAGAGGGATAAACCTACAATATATGC  191

seq1  ATAATAAAATGCTAAAATATTATATTTTTTCAATAAATGTTAGAAGCTGT  245
      ||||| ||||||| ||||||||||||||||||||||| ||||||||||||
seq2  ATAAT-AAATGCT-AAATATTATATTTTTTCAATAAA-GTTAGAAGCTGT  238

seq1  TCATAGAGACATAAACCTGCAATGTAAGCAAGTAGCCATCTTTTGTTACA  295
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCATAGAGACAT-AACCTGCAATGTAAGCAAGTAGCCATCTTTTGTTACA  287

seq1  CAGCAAGTTTCAAAACAAGGTTGGCATATATGAATCCAGCCCAGAATTTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTTTCAAAACAAGGTTGGCATATATGAATCCAGCCCAGAATTTA  337

seq1  TGAAAACCTTCATAAATAAATACACAAATAATAATGGAAAATATGGATAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCTTCATAAATAAATACACAAATAATAATGGAAAATATGGATAC  387

seq1  TATATATAGAAGCATAAAATTAAACTCTTATATTTAGTGTCTCATTATAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAGAAGCATAAAATTAAACTCTTATATTTAGTGTCTCATTATAT  437

seq1  ATATAAATCAACCAAAATGGATGGAAGATATTGTTAAGACCAGATAGTGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATCAACCAAAATGGATGGAAGATATTGTTAAGACCAGATAGTGC  487

seq1  CATACTGCATAACAAAACATAAACAAAACCAGGACATTGTTCTGGGTGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGCATAACAAAACATAAACAAAACCAGGACATTGTTCTGGGTGAT  537

seq1  TTTCAGGATTTTATTCAAAGGTAAAAACCATGATACATAAATAGGATTAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGATTTTATTCAAAGGTAAAAACCATGATACATAAATAGGATTAT  587

seq1  ATAAAACTATAAATCTTCTCAACAGGAAAGAAAGTAATAGCATGTAGGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTATAAATCTTCTCAACAGGAAAGAAAGTAATAGCATGTAGGGA  637

seq1  AAATTACTGAATAGAAGAAATATGTGCTAGCTTTGCTTTTAGTAAGCAGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTGAATAGAAGAAATATGTGCTAGCTTTGCTTTTAGTAAGCAGT  687

seq1  TAATATTAAAACTATCAGGAAAGTTATTCAGCATCCAGAAAAATAGTTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAAAACTATCAGGAAAGTTATTCAGCATCCAGAAAAATAGTTCA  737

seq1  CATATATGCAGACTATATACATGAAATATATTTTTTAAATACTGTAGAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGCAGACTATATACATGAAATATATTTTTTAAATACTGTAGAAA  787

seq1  TGACCAAATGATACACCAAAATATCCAGTAATTGTAACTGCTGGGAAATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAATGATACACCAAAATATCCAGTAATTGTAACTGCTGGGAAATT  837

seq1  ACTTATTCAGAACACAGTAAGGTGATACTTTATAGCTAGAATAGAAATTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTCAGAACACAGTAAGGTGATACTTTATAGCTAGAATAGAAATTC  887

seq1  ATGAGAACAAAAGTTTCTGGTAAACGTAAAGCTGTTATTTACTATTAGTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACAAAAGTTTCTGGTAAACGTAAAGCTGTTATTTACTATTAGTA  937

seq1  AATTAGTACAGATATGTTAAAACATGTGGAGTTTCTTCAAAGCAACTAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTACAGATATGTTAAAACATGTGGAGTTTCTTCAAAGCAACTAAA  987

seq1  AGTCCAATGTCATGGTTCAGCACTCTCATTATTGCAGATAAATTCAAATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAATGTCATGGTTCAGCACTCTCATTATTGCAGATAAATTCAAATG  1037

seq1  ATATGAAATAAGAAATTAGAATGCCCACCAGCACACCCGTGCTTAATGCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAATAAGAAATTAGAATGCCCACCAGCACACCCGTGCTTAATGCA  1087

seq1  GAACTATACAGAAATTCTGAGATATGGAATCAATCTATGTGTCCGTCGAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATACAGAAATTCTGAGATATGGAATCAATCTATGTGTCCGTCGAT  1137

seq1  AGATGAATTC  1155
      ||||||||||
seq2  AGATGAATTC  1147