BAC Information

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BAC

Clone NameB6Ng01-116O21
ChromosomeX (Build37)
Map Location 13,283,603 - 13,415,992
singlet/doubletdoublet
Overlap geneCask
Upstream geneCrsp2, LOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Gpr34, Gpr82
Downstream geneLOC385327, EG385328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116O21.bB6Ng01-116O21.g
ACCDH921803DH921804
length1,1051,093
definitionDH921803|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O21, 5' end.DH921804|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,414,877 - 13,415,992)(13,283,603 - 13,284,707)
sequence
gaattctccagcctcaaggagctctgtaaataagagacagatgattacat
ctagaccatagcacactaattgttgaatcctgataagtcagtaaggcaag
agtcacagctaacttgtccatgctgcttgctgtctgggcataggtttaaa
gccagcataaagaaagtcgtcagtagttgttgaatgaatatattaagtga
gaaacccagagacaatgtgactacctagcaggaaaataaatttgaggaaa
tctttgtagcggacacaaaacttgaaagggttgttagtccttgggtaata
tttaaaattttaggcttgttttttcattcctaaaaataagtagagaaatt
cagataaaggaactctaataactcttaggaatatataaatatattcaaga
gcacctagtgtcttttagcaaaaaaaaaaaaaaaaaaaaaaaaaaagtta
tatgctacgaaagatattctttgtgttcctaatttatttgtaagcctgtc
tcgggttgtagtattacagtgtggtgaaaagctccaaaatttttgttaaa
agagttttatatcatacctttgcatttggacattgggtagaattaattgc
tcataatgtgagattttatgatgaagaaaaggaaactctagggctggtga
gatggctcagagggtaatggtacttgccagcaagcctgactacttgagtt
tgattcctgctgggactcacaatggtgaaaggagagaaccaattcctgca
tgttgttctgtggtgtgtgtacatatgtatatatacatataatacaaatt
gtgctaatttgtttaaaagaaaaggaagatcctggaatatgtatttaaga
aataactatatacacgctttgttaaatttatactgtagtagtttcccaaa
ttttattatgacagcagtttccatatcttaaccaaggacaaatgagtagt
gtgtgaaacattgggcactgactctaaagtacctaaatgcacactctgta
gtatgatcaccctgactctctctcctcaaccccatttctcatgacttctg
gctgggctgtcctcatcttcctcctctctctttctgttcatttctttcag
actcc
gaattcattcgagcatggaggaggaagaggcttacaagtacctaccccta
gctgagtaacagttattgccagttgacacctgctgggcgagagacagtca
attttctttaaaggtgtggcccctggtaggtggaccatgctcctgtggat
ggccttacactcatgagtataaggtcagcacaaactgtacttagtgggtt
attgaattatcaaggatgaatcaatctctctctctctctctagatggctt
agtagttaagagcactggctgctcttctagaggactgggatgagtctcag
cactgaaatagcatctcacaactgtctgttaagggatctgatggcctcta
taggtaccagacatgtacatggtatgcagatatacactcaggccaaatac
tcagacatatacaacaataaaataatgaacacttattaaatatttatata
taatatattaaatattaatatattaaaatattatattaaaaagaatatta
aatacagcatcatttctaataaggagattatcaaattaaatgtggtatat
gcacctctaggtatcttactgcagtcataaaacactattctcaaaaaatc
aatgtcacaaaaatgtataaggctattaagtagaaaaaaataatcctaaa
cacgccactgatgaaggtttgtgagtgacatttttttgtgacattataat
ttttaaccatttgtcaattggtacaaagtaggtatattgtaccaattttt
atatacttaaaattatttataattttttaagattaattgtactttaaatt
ccagaaaaaaaatcaactgaattaatcctatgggtatcggcatatcatta
atttaaaattatttttatttgattgaagatcagattttattatgctgaac
aaaaattactagagcgacaatttcaaatgtattttttctataatagtatc
aggagtattctttgttttcaaatatacttagagctaaatccctgctacat
tataaatctcactatgattgcttcagtgatctggccacctatttttctac
ttcgtgtaaatggatacctaataactgaagttaaaaccaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_13414877_13415992
seq2: B6Ng01-116O21.b_47_1151 (reverse)

seq1  GGAGTCTGGGAAAGAAATGGGACAGAAAGAGAGAGGAGAGAGAAAGAAGG  50
      |||||||  ||||||||| | ||||||||||||||    ||| |||| | 
seq2  GGAGTCT--GAAAGAAAT-GAACAGAAAGAGAGAG----GAGGAAGATGA  43

seq1  GAACAGGCCAGCCAGGAAGTCATGGAGAAATGGGGTTGGAGGAGAGAGAG  100
      | |||| ||||||| |||||||| ||||||||||||| ||||||||||||
seq2  GGACAGCCCAGCCA-GAAGTCAT-GAGAAATGGGGTT-GAGGAGAGAGAG  90

seq1  TCAGGGTGATCATACTTACAGAGTGTGCATTTAGGTACTTTAGAGTCAGT  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGATCATAC-TACAGAGTGTGCATTTAGGTACTTTAGAGTCAGT  139

seq1  GCCCAATGTTTCACACACTACTCATTTGTCCTTGGTTAAGATATGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATGTTTCACACACTACTCATTTGTCCTTGGTTAAGATATGGAAAC  189

seq1  TGCTGTCATAATAAAATTTGGGAAACTACTACAGTATAAATTTAACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCATAATAAAATTTGGGAAACTACTACAGTATAAATTTAACAAAG  239

seq1  CGTGTATATAGTTATTTCTTAAATACATATTCCAGGATCTTCCTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATATAGTTATTTCTTAAATACATATTCCAGGATCTTCCTTTTCTT  289

seq1  TTAAACAAATTAGCACAATTTGTATTATATGTATATATACATATGTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAATTAGCACAATTTGTATTATATGTATATATACATATGTACAC  339

seq1  ACACCACAGAACAACATGCAGGAATTGGTTCTCTCCTTTCACCATTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACAGAACAACATGCAGGAATTGGTTCTCTCCTTTCACCATTGTGA  389

seq1  GTCCCAGCAGGAATCAAACTCAAGTAGTCAGGCTTGCTGGCAAGTACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCAGGAATCAAACTCAAGTAGTCAGGCTTGCTGGCAAGTACCAT  439

seq1  TACCCTCTGAGCCATCTCACCAGCCCTAGAGTTTCCTTTTCTTCATCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCTGAGCCATCTCACCAGCCCTAGAGTTTCCTTTTCTTCATCATA  489

seq1  AAATCTCACATTATGAGCAATTAATTCTACCCAATGTCCAAATGCAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCACATTATGAGCAATTAATTCTACCCAATGTCCAAATGCAAAGG  539

seq1  TATGATATAAAACTCTTTTAACAAAAATTTTGGAGCTTTTCACCACACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATAAAACTCTTTTAACAAAAATTTTGGAGCTTTTCACCACACTG  589

seq1  TAATACTACAACCCGAGACAGGCTTACAAATAAATTAGGAACACAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTACAACCCGAGACAGGCTTACAAATAAATTAGGAACACAAAGAA  639

seq1  TATCTTTCGTAGCATATAACTTTTTTTTTTTTTTTTTTTTTTTTTTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCGTAGCATATAACTTTTTTTTTTTTTTTTTTTTTTTTTTTGCT  689

seq1  AAAAGACACTAGGTGCTCTTGAATATATTTATATATTCCTAAGAGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACACTAGGTGCTCTTGAATATATTTATATATTCCTAAGAGTTATT  739

seq1  AGAGTTCCTTTATCTGAATTTCTCTACTTATTTTTAGGAATGAAAAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCTTTATCTGAATTTCTCTACTTATTTTTAGGAATGAAAAAACA  789

seq1  AGCCTAAAATTTTAAATATTACCCAAGGACTAACAACCCTTTCAAGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAAATTTTAAATATTACCCAAGGACTAACAACCCTTTCAAGTTTT  839

seq1  GTGTCCGCTACAAAGATTTCCTCAAATTTATTTTCCTGCTAGGTAGTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCGCTACAAAGATTTCCTCAAATTTATTTTCCTGCTAGGTAGTCAC  889

seq1  ATTGTCTCTGGGTTTCTCACTTAATATATTCATTCAACAACTACTGACGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTCTGGGTTTCTCACTTAATATATTCATTCAACAACTACTGACGA  939

seq1  CTTTCTTTATGCTGGCTTTAAACCTATGCCCAGACAGCAAGCAGCATGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTATGCTGGCTTTAAACCTATGCCCAGACAGCAAGCAGCATGGA  989

seq1  CAAGTTAGCTGTGACTCTTGCCTTACTGACTTATCAGGATTCAACAATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAGCTGTGACTCTTGCCTTACTGACTTATCAGGATTCAACAATTA  1039

seq1  GTGTGCTATGGTCTAGATGTAATCATCTGTCTCTTATTTACAGAGCTCCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTATGGTCTAGATGTAATCATCTGTCTCTTATTTACAGAGCTCCT  1089

seq1  TGAGGCTGGAGAATTC  1116
      ||||||||||||||||
seq2  TGAGGCTGGAGAATTC  1105

seq1: chrX_13283603_13284707
seq2: B6Ng01-116O21.g_68_1160

seq1  GAATTCATTCGAGCATGGAGGAGGAAGAGGCTTACAAGTACCTACCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCGAGCATGGAGGAGGAAGAGGCTTACAAGTACCTACCCCTA  50

seq1  GCTGAGTAACAGTTATTGCCAGTTGACACCTGCTGGGCGAGAGACAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTAACAGTTATTGCCAGTTGACACCTGCTGGGCGAGAGACAGTCA  100

seq1  ATTTTCTTTAAAGGTGTGGCCCCTGGTAGGTGGACCATGCTCCTGTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTAAAGGTGTGGCCCCTGGTAGGTGGACCATGCTCCTGTGGAT  150

seq1  GGCCTTACACTCATGAGTATAAGGTCAGCACAAACTGTACTTAGTGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTACACTCATGAGTATAAGGTCAGCACAAACTGTACTTAGTGGGTT  200

seq1  ATTGAATTATCAAGGATGAATCAATCTCTCTCTCTCTCTCTAGATGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTATCAAGGATGAATCAATCTCTCTCTCTCTCTCTAGATGGCTT  250

seq1  AGTAGTTAAGAGCACTGGCTGCTCTTCTAGAGGACTGGGATGAGTCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTAAGAGCACTGGCTGCTCTTCTAGAGGACTGGGATGAGTCTCAG  300

seq1  CACTGAAATAGCATCTCACAACTGTCTGTTAAGGGATCTGATGGCCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATAGCATCTCACAACTGTCTGTTAAGGGATCTGATGGCCTCTA  350

seq1  TAGGTACCAGACATGTACATGGTATGCAGATATACACTCAGGCCAAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACCAGACATGTACATGGTATGCAGATATACACTCAGGCCAAATAC  400

seq1  TCAGACATATACAACAATAAAATAATGAACACTTATTAAATATTTATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATATACAACAATAAAATAATGAACACTTATTAAATATTTATATA  450

seq1  TAATATATTAAATATTAATATATTAAAATATTATATTAAAAAGAATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTAAATATTAATATATTAAAATATTATATTAAAAAGAATATTA  500

seq1  AATACAGCATCATTTCTAATAAGGAGATTATCAAATTAAATGTGGTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCATCATTTCTAATAAGGAGATTATCAAATTAAATGTGGTATAT  550

seq1  GCACCTCTAGGTATCTTACTGCAGTCATAAAACACTATTCTCAAAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCTAGGTATCTTACTGCAGTCATAAAACACTATTCTCAAAAAATC  600

seq1  AATGTCACAAAAATGTATAAGGCTATTAAGTAGAAAAAAATAATCCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACAAAAATGTATAAGGCTATTAAGTAGAAAAAAATAATCCTAAA  650

seq1  CACGCCACTGATGAAGGTTTGTGAGTGACATTTTTTTGTGACATTATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCACTGATGAAGGTTTGTGAGTGACATTTTTTTGTGACATTATAAT  700

seq1  TTTTAACCATTTGTCAATTGGTACAAAGTAGGTATATTGTACCAA-TTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTAACCATTTGTCAATTGGTACAAAGTAGGTATATTGTACCAATTTTT  750

seq1  ATATACTTAAAATTATTTATAATTTTTTAAGATTAATTGTACTTTTAAAT  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATATACTTAAAATTATTTATAATTTTTTAAGATTAATTGTAC-TTTAAAT  799

seq1  TCCAGAAAAAAAATCAACTGAATTAATCCTAT-GGTATCGGCATATCATT  848
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCAGAAAAAAAATCAACTGAATTAATCCTATGGGTATCGGCATATCATT  849

seq1  AA-TTAAAATTA-TTTTATTTGATTGAAGATCAGA-TTTAATATGCTGAA  895
      || ||||||||| |||||||||||||||||||||| |||| |||||||||
seq2  AATTTAAAATTATTTTTATTTGATTGAAGATCAGATTTTATTATGCTGAA  899

seq1  CAAAAATTACTAGAGCGACAATTTCAAATGTATTTTTCTAATAATAGTAT  945
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  CAAAAATTACTAGAGCGACAATTTCAAATGTATTTTTTCTATAATAGTAT  949

seq1  CA-GAGTATTCTTTGTTTTCAAATATAACTTAGAAGCTTAAAATCCCTGC  994
      || ||||||||||||||||||||||| |||||| ||||  ||||||||||
seq2  CAGGAGTATTCTTTGTTTTCAAATAT-ACTTAG-AGCT--AAATCCCTGC  995

seq1  TACATTATAAAATCTCAACTAATGATTTGCTTCAGTGATCTGGCCACCTA  1044
      |||||||| ||||||| ||| |||| ||||||||||||||||||||||||
seq2  TACATTAT-AAATCTC-ACT-ATGA-TTGCTTCAGTGATCTGGCCACCTA  1041

seq1  ATTTTTTTCTACTACGTGTTAAAATGATACCATAATTACACTTAAAAGTT  1094
         |||||||||| |||| ||||  |||||| |||| ||      |||||
seq2  ---TTTTTCTACTTCGTG-TAAATGGATACC-TAATAAC----TGAAGTT  1082

seq1  AAAAACAACTC  1105
      |||| ||||||
seq2  AAAACCAACTC  1093