BAC Information

Click to search

BAC

Clone NameB6Ng01-117I13
ChromosomeX (Build37)
Map Location 9,132,079 - 9,133,209
singlet/doubletsinglet
Overlap genenone
Upstream geneSsxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb
Downstream geneEG333452, LOC100042867, Dynlt3, 1700054O13Rik, 4930557A04Rik, Sytl5, LOC436194, Srpx, Rpgr, Otc, 4933416E14Rik, Tspan7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117I13.bB6Ng01-117I13.g
ACCDH922251DH922252
length1,122987
definitionDH922251|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I13, 5' end.DH922252|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcactgctttccaaaatagttgtacatttaaatatttaaatga
aagacttaatatcattcttgttatatttccttttcttggattctttctca
aggtaacatattgctgaaataaaagttagaatcatgatattcgtaggtct
tctatttcctaactatcaatctatcctcatccaaaagttgacaacttgga
tattttgaaggggcaatatggaaatccctgcaactttagaaacatatgag
cctgaaaacattgcttaactagttgtaaactcacataactgtgtttagag
ttagcattttttccagtttcttaacttagccataaagttactgtgaaaac
ataatctatttgtctgttttttgctgtttcattttaaaatttttggaagg
ttttggagacagggtcttccttgtagcccagtctaacccagaaaccccct
cagttctccagcctctgcgtttcagaatcctgggattgcaagctcaagct
acaatgcccgattttctgggttttgttgttgttgttgttgtttcctagac
atcttgttgataatgatacaacaatgtctatagtgttgattcacttacta
atgacaggtccccttttgaactttaattcaaatcatcagtaatgtcttat
taaataggatcagaaaataatctaatagctacctacctctttgtctgatt
aatcaatcttcacatggtgtgtttgctttagatacatgtttctttttcct
ttttggaaataacatttctgtgaggggaatttctgtgagctctccttctc
atgattttaatattttccaatctagtgggtgtgtgaatatactgtagaga
cactatatgcctgagtcatatatatgctggctttgtaagtgtttgaaatt
tgtcacatacttagctagtcagtcatatgaagataggacacagtttgacg
acttctgttctctgtgacttcatatattcgtttctcttgagttgtgtgac
ttccttggcacaagttattttagagcaaagtgataatggctgtttacctc
atctattccttaaaagtaaaaaattcttgtatcctaaaacactgacaaaa
acacttagggagaaaggtttat
gaattcagtccattgatgttaggaaatattaaggaacagtgattgttgct
tcctgttatttttgttgttagaggtgcaattatgtttgtgtggctatctt
cttttgggtttgttgaaagaagattactttcttgctttttctagggtgta
gtttccatcatgttgaagttttccatctattatcctttgtagatctggac
ttgtggaaagatgttgtgtaaatttggttttgtcatggaatatcttggtt
tcttcatctatggtaactgagagttttgttgggtatagtagcctgggctg
gcatttgtgttctcttagggtttacataacatctgtccaggatcttctgg
ctttcatattctctggtgagaaatctggtgtaattctgataggtctgcct
ttatatgttacttgacctttttcccttcctgcttttaatattctatcttt
atttagtgcatttgttgttctgattatcatgtgaccggagggatttcttt
tctggtccagtttatttggagctctgtaggcttcttgtatgttcatggga
atctctttctttaggttaggggagttttcttctatatttttgtttgaaga
tatttactttgggaatcttcattctcttctatacctattatccttaggtt
tggtcttctcattgtgtcttggatttcctggatgttttcagttaggttat
ttgttgttgttttgttgttgttgttgtttgcattttctttgcctggtgtg
tcaatgttttctatggtatcttttgcctctgagattctctcttctatttc
ctgtctctgtctgtgatgcttgcatctatgattagtgatgtatttcctag
ggttttatatcttccagaattggctcctttgtgatttctgtattgtttct
gtttccattttagtcctgggtggttttggttcattccttggcctggttgg
atgggtttctatattaaaagggattttggacttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_9132079_9133209
seq2: B6Ng01-117I13.b_49_1170 (reverse)

seq1  ATAAACCCTTTCTCCCTAAGTTGTTTTTGTCAGTGTTTTGGGATACCAAG  50
      ||||| |||||||||||||| |||||||||||||||||| ||||| ||||
seq2  ATAAA-CCTTTCTCCCTAAG-TGTTTTTGTCAGTGTTTTAGGATA-CAAG  47

seq1  AAATTTTCTAACCTTTTAAGGAAATAGATGAGGTAAACAGCCATTATCAC  100
       |||||| ||  ||||||||| ||||||||||||||||||||||||||||
seq2  -AATTTTTTA--CTTTTAAGG-AATAGATGAGGTAAACAGCCATTATCAC  93

seq1  TTTTGCTCTAAAATAACTTGTGCCAAGGAAGTCACACAACTCAAGAGAAA  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTGCTCTAAAATAACTTGTGCCAAGGAAGTCACACAACTCAAGAGAAA  142

seq1  CGAATATATTGAAGTCACAGAGAACAGAAGTCGTCAAACTGTGTCCTATC  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CGAATATA-TGAAGTCACAGAGAACAGAAGTCGTCAAACTGTGTCCTATC  191

seq1  TTCATATGACTGACTAGCTAAGTATGTGACAAATTTCAAACACTTACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGACTGACTAGCTAAGTATGTGACAAATTTCAAACACTTACAAA  241

seq1  GCCAGCATATATATGACTCAGGCATATAGTGTCTCTACAGTATATTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCATATATATGACTCAGGCATATAGTGTCTCTACAGTATATTCACA  291

seq1  CACCCACTAGATTGGAAAATATTAAAATCATGAGAAGGAGAGCTCACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTAGATTGGAAAATATTAAAATCATGAGAAGGAGAGCTCACAGA  341

seq1  AATTCCCCTCACAGAAATGTTATTTCCAAAAAGGAAAAAGAAACATGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCCTCACAGAAATGTTATTTCCAAAAAGGAAAAAGAAACATGTAT  391

seq1  CTAAAGCAAACACACCATGTGAAGATTGATTAATCAGACAAAGAGGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAAACACACCATGTGAAGATTGATTAATCAGACAAAGAGGTAGG  441

seq1  TAGCTATTAGATTATTTTCTGATCCTATTTAATAAGACATTACTGATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATTAGATTATTTTCTGATCCTATTTAATAAGACATTACTGATGAT  491

seq1  TTGAATTAAAGTTCAAAAGGGGACCTGTCATTAGTAAGTGAATCAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAAAGTTCAAAAGGGGACCTGTCATTAGTAAGTGAATCAACACT  541

seq1  ATAGACATTGTTGTATCATTATCAACAAGATGTCTAGGAAACAACAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATTGTTGTATCATTATCAACAAGATGTCTAGGAAACAACAACAA  591

seq1  CAACAACAAAACCCAGAAAATCGGGCATTGTAGCTTGAGCTTGCAATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAAACCCAGAAAATCGGGCATTGTAGCTTGAGCTTGCAATCCC  641

seq1  AGGATTCTGAAACGCAGAGGCTGGAGAACTGAGGGGGTTTCTGGGTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTGAAACGCAGAGGCTGGAGAACTGAGGGGGTTTCTGGGTTAGA  691

seq1  CTGGGCTACAAGGAAGACCCTGTCTCCAAAACCTTCCAAAAATTTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTACAAGGAAGACCCTGTCTCCAAAACCTTCCAAAAATTTTAAAA  741

seq1  TGAAACAGCAAAAAACAGACAAATAGATTATGTTTTCACAGTAACTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGCAAAAAACAGACAAATAGATTATGTTTTCACAGTAACTTTAT  791

seq1  GGCTAAGTTAAGAAACTGGAAAAAATGCTAACTCTAAACACAGTTATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGTTAAGAAACTGGAAAAAATGCTAACTCTAAACACAGTTATGTG  841

seq1  AGTTTACAACTAGTTAAGCAATGTTTTCAGGCTCATATGTTTCTAAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACAACTAGTTAAGCAATGTTTTCAGGCTCATATGTTTCTAAAGTT  891

seq1  GCAGGGATTTCCATATTGCCCCTTCAAAATATCCAAGTTGTCAACTTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATTTCCATATTGCCCCTTCAAAATATCCAAGTTGTCAACTTTTG  941

seq1  GATGAGGATAGATTGATAGTTAGGAAATAGAAGACCTACGAATATCATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGATAGATTGATAGTTAGGAAATAGAAGACCTACGAATATCATGA  991

seq1  TTCTAACTTTTATTTCAGCAATATGTTACCTTGAGAAAGAATCCAAGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTTTTATTTCAGCAATATGTTACCTTGAGAAAGAATCCAAGAAA  1041

seq1  AGGAAATATAACAAGAATGATATTAAGTCTTTCATTTAAATATTTAAATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATATAACAAGAATGATATTAAGTCTTTCATTTAAATATTTAAATG  1091

seq1  TACAACTATTTTGGAAAGCAGTGAGGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  TACAACTATTTTGGAAAGCAGTGAGGAATTC  1122