BAC Information

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BAC

Clone NameB6Ng01-119B04
ChromosomeX (Build37)
Map Location 110,016,835 - 110,151,473
singlet/doubletdoublet
Overlap geneLOC100039112
Upstream geneLOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428
Downstream geneChm, EG664918, Dach2, LOC237016
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119B04.bB6Ng01-119B04.g
ACCDH923381DH923382
length1,1611,120
definitionDH923381|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B04, 5' end.DH923382|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,016,835 - 110,018,007)(110,150,347 - 110,151,473)
sequence
gaattcaaaatccaaaagaatttattttataaatggtaatttctatggaa
atctcacatattttaagcagtcagttctaaggctgataatatacaatggc
ttcctctttgtcactgatttagagagaaaaagcacctggctcaggagcca
ggctggagggcaaatgtgagacacatggtagcacttcttctattcacaaa
agcgatcaacatgtcacttctagcaggccacagagttctgttgagttatc
ttgacaatgtctaaatcctattttctctgtgaaaaagcaagtaattttta
tttaaatccttgttttaatctcaaaattttctgggtctaaaaacttggca
ccgtcttcagacaaaagctatcatgatgtgaacttttgttgcatttcaag
cgattagtttaatattttgtccttaactccataagaaaatcttaagcctt
tgggcatttgttaaagctgtcttgcatccacttgttttcttattttgcag
tgcctggaagggcgaaaaccggtttttttgtttgtttgtttgttttgttt
tgttttgctttgctttgttttgttttttgaaatccacttccgccatctag
tgcctatatatggaactacagccaaatacttgaccacactccacacttca
tttggggaagtgtaccttaatcggagtgacctacacacatgtttaaaatt
aaataaaattattgcaaaagaatattttaaattttgaagttcatagctac
acgctcatatatattcatacgccaaaatttgaaaaataatgctaaaaatt
ttgcttccgatttgaaaggcagtttcaacacgacagtgtcacatagagat
gttgtttctaattatttattttattttttgagattataattatgttactt
actccttaattcttctctctaaaccctctcatataactctccttgctctc
tttaatatccgtggccccttttttcatgaatcatgttgcatctgatgtaa
taggctgagaggaggagcttagagtgggtgttgttaacttccttgtgacc
tgttgcgttgtcattcctctagtacacaggatcctttctggaataaggtt
catgatctcagagtcgaaggtccctatacttcccccacccccacctgtct
ccctaccaccc
gaattctcacatgacttaatccctggaccatgttccaacagggccatagt
ggtagaaggatatgatcaaaatgcattgtttaattctatggggttttcaa
ataataaaaaattgcaaatgttgaacattttaaaccaatacaataatagt
gctacccacctcccaactcagtactcacgggaagctataccagcatgggg
gtagacttggcagaggttataagactgatggtagaaaagaatggtgaata
tgagaaaatcacatatcagtatataaattaggccttttcatatgaggggt
agtttgtcagtacctaccaagacattaagtgcagatagactgttagccag
cactaacatttttcatggttggtttccttagcttatagaaagttctatat
gtgtaggttgtaaagctacgtaattgaaaatgccttatggatattttaga
ttgtggaagacagatggaaaaactgcctaaataagtcagtatctaaaatg
aagaaaggaatataatttggaaatgtgaagtatatgaatgtctaatacat
agagttagaattgaggttgataaataaagctatgagctatatggtttctg
ataaagggttgtgaatgctctcgcttgatggaatattggggtgtttgtgg
tagtcttttaacatccctgccctcccattcttggtactcagtaataatat
taagccatagtaacaagataaaggagacacccatatacatagaaataaaa
tgttgaaagaacctattgacagaaaaaaatgccaacgcatttgttcaaaa
ccatatctcaaatcatctgtgatagaaagccaaggaaatgaagtgtgatt
tactgttctaaaaactgcactcatttaactcagagcagctgtagatgtct
ggggatcatcaagccagtctagtatggacagtaaatgcgctcattagtcc
cagaagcctaactgagagctgttcaaagttgatggcttcagggaaggaaa
gacgatttctcttttttagagtatggttgctggcagaccatccacactct
gctggatggcctccattcccatggagtatatgacaacacacgtgaactgg
gagattattaggaaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_110016835_110018007
seq2: B6Ng01-119B04.b_47_1207

seq1  GAATTCAAAATCCAAAAGAATTTATTTTATAAATGGTAATTTCTATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCCAAAAGAATTTATTTTATAAATGGTAATTTCTATGGAA  50

seq1  ATCTCACATATTTTAAGCAGTCAGTTCTAAGGCTGATAATATACAATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACATATTTTAAGCAGTCAGTTCTAAGGCTGATAATATACAATGGC  100

seq1  TTCCTCTTTGTCACTGATTTAGAGAGAAAAAGCACCTGGCTCAGGAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTGTCACTGATTTAGAGAGAAAAAGCACCTGGCTCAGGAGCCA  150

seq1  GGCTGGAGGGCAAATGTGAGACACATGGTAGCACTTCTTCTATTCACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGGGCAAATGTGAGACACATGGTAGCACTTCTTCTATTCACAAA  200

seq1  AGCGATCAACATGTCACTTCTAGCAGGCCACAGAGTTCTGTTGAGTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATCAACATGTCACTTCTAGCAGGCCACAGAGTTCTGTTGAGTTATC  250

seq1  TTGACAATGTCTAAATCCTATTTTCTCTGTGAAAAAGCAAGTAATTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAATGTCTAAATCCTATTTTCTCTGTGAAAAAGCAAGTAATTTTTA  300

seq1  TTTAAATCCTTGTTTTAATCTCAAAATTTTCTGGGTCTAAAAACTTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCCTTGTTTTAATCTCAAAATTTTCTGGGTCTAAAAACTTGGCA  350

seq1  CCGTCTTCAGACAAAAGCTATCATGATGTGAACTTTTGTTGCATTTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTTCAGACAAAAGCTATCATGATGTGAACTTTTGTTGCATTTCAAG  400

seq1  CGATTAGTTTAATATTTTGTCCTTAACTCCATAAGAAAATCTTAAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTAGTTTAATATTTTGTCCTTAACTCCATAAGAAAATCTTAAGCCTT  450

seq1  TGGGCATTTGTTAAAGCTGTCTTGCATCCACTTGTTTTCTTATTTTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTTGTTAAAGCTGTCTTGCATCCACTTGTTTTCTTATTTTGCAG  500

seq1  TGCCTGGAAGGGCGAAAACCGGTTTTTTTGTTTGTTTGTTTGTTTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAAGGGCGAAAACCGGTTTTTTTGTTTGTTTGTTTGTTTTGTTT  550

seq1  TGTTTTGCTTTGCTTTGTTTTGTTTTTTGAAATCCACTTCCGCCATCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCTTTGCTTTGTTTTGTTTTTTGAAATCCACTTCCGCCATCTAG  600

seq1  TGCCTATATATGGAACTACAGCCAAATACTTGACCACACTCCACACTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATATATGGAACTACAGCCAAATACTTGACCACACTCCACACTTCA  650

seq1  TTTGGGGAAGTGTACCTTAATCGGAGTGACCTACACACATGTTTAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGAAGTGTACCTTAATCGGAGTGACCTACACACATGTTTAAAATT  700

seq1  AAATAAAATTATTGCAAAAGAATATTTTAAATTTTGAAGTTCATAGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATTATTGCAAAAGAATATTTTAAATTTTGAAGTTCATAGCTAC  750

seq1  ACGCTCATATATATTCATACGCCAAAATTTGAAAAATAATGCTAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCATATATATTCATACGCCAAAATTTGAAAAATAATGCTAAAAATT  800

seq1  TTGCTTCCGATTTGAAAGGCAGTTTCAACACGACAGTGTCACATAGAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCGATTTGAAAGGCAGTTTCAACACGACAGTGTCACATAGAGAT  850

seq1  GTTGTTTCTAATTATTTATTTTATTTTTTGAGATTATAATTATGTTACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTCTAATTATTTATTTTATTTTTTGAGATTATAATTATGTTACTT  900

seq1  ACTCCTTAATTCTTCTCTCTAAACCCTCTCATATAACTCTCCTTGCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTAATTCTTCTCTCTAAACCCTCTCATATAACTCTCCTTGCTCTC  950

seq1  TTTTAATATCCGTGGCCCCTTTTTTCATGAATCATTGTTGCATCTGATGT  1000
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -TTTAATATCCGTGGCCCCTTTTTTCATGAATCA-TGTTGCATCTGATGT  998

seq1  AATAGGCTGAGAGGAGGAAGCTTAGAGTGGGTGTTGTTAACTTCCTTGTG  1050
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATAGGCTGAGAGGAGG-AGCTTAGAGTGGGTGTTGTTAACTTCCTTGTG  1047

seq1  ACCTG-TGCGTTGTTCATTCCTCTAGTACACAGGATCCTTTCTGGAATAA  1099
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGCGTTG-TCATTCCTCTAGTACACAGGATCCTTTCTGGAATAA  1096

seq1  GGGTTTCATGATCTCAGAGTCCGAAAGTCCCCTATACCTTCCCCCCACCC  1149
      ||  |||||||||||||||| |||| || ||||||||  | |||||||||
seq2  GG--TTCATGATCTCAGAGT-CGAAGGT-CCCTATAC--TTCCCCCACCC  1140

seq1  CCACCCCTGCTCCCCTACCCACCC  1173
      |||  ||||   ||||| ||||||
seq2  CCA--CCTGTCTCCCTA-CCACCC  1161

seq1: chrX_110150347_110151473
seq2: B6Ng01-119B04.g_65_1184 (reverse)

seq1  TTTTTTTTCTTAATAATCTACCAGTTTCACGTTGTGTTGTCCATATACT-  49
      |||| |||| ||||||||| |||| |||||| |||||||| |||||||| 
seq2  TTTTCTTTCCTAATAATCTCCCAG-TTCACG-TGTGTTGT-CATATACTC  47

seq1  CATGGGAATGGA-GCCATCCAGCAGAGTGTGGATGGTCTGCCAGCAACCA  98
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATGGGAATGGAGGCCATCCAGCAGAGTGTGGATGGTCTGCCAGCAACCA  97

seq1  TACTCTTAAAAAAGAGAAATCCGTCTTTTCCTTCCCTGAAGCCATCAACT  148
      ||||| |||||||||||||| |||| ||||||||||||||||||||||||
seq2  TACTC-TAAAAAAGAGAAAT-CGTC-TTTCCTTCCCTGAAGCCATCAACT  144

seq1  TTGAACAGCTCTTCAGTTAGGCTTCTGGGACTAATGAGCGCATTTACTGT  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGCTC-TCAGTTAGGCTTCTGGGACTAATGAGCGCATTTACTGT  193

seq1  CCATACTAGACTGGCTTGATGATCCACAGACATCTACAGCTGCTCTGAGT  248
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCATACTAGACTGGCTTGATGATCCCCAGACATCTACAGCTGCTCTGAGT  243

seq1  TAAATGAGTGCAGTTTTTAGAACAGTAAATCACACTTCATTTCCTTTGGC  298
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAATGAGTGCAGTTTTTAGAACAGTAAATCACACTTCATTTCC-TTGGC  292

seq1  TTTCTATCACAGATGATTTGAGATATGGTTTTGAACAAATGCGTTGGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTCTATCACAGATGATTTGAGATATGGTTTTGAACAAATGCGTTGGCA-  341

seq1  TTTTTTTCTGTCAATAGGTTCTTTCAACATTTTATTTCTATGTATATGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGTCAATAGGTTCTTTCAACATTTTATTTCTATGTATATGGG  391

seq1  TGTCTCCTTTATCTTGTTACTATGGCTTAATATTATTACTGAGTACCAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTTTATCTTGTTACTATGGCTTAATATTATTACTGAGTACCAAG  441

seq1  AATGGGAGGGCAGGGATGTTAAAAGACTACCACAAACACCCCAATATTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGGGCAGGGATGTTAAAAGACTACCACAAACACCCCAATATTCC  491

seq1  ATCAAGCGAGAGCATTCACAACCCTTTATCAGAAACCATATAGCTCATAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCGAGAGCATTCACAACCCTTTATCAGAAACCATATAGCTCATAG  541

seq1  CTTTATTTATCAACCTCAATTCTAACTCTATGTATTAGACATTCATATAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTATCAACCTCAATTCTAACTCTATGTATTAGACATTCATATAC  591

seq1  TTCACATTTCCAAATTATATTCCTTTCTTCATTTTAGATACTGACTTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTCCAAATTATATTCCTTTCTTCATTTTAGATACTGACTTATT  641

seq1  TAGGCAGTTTTTCCATCTGTCTTCCACAATCTAAAATATCCATAAGGCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGTTTTTCCATCTGTCTTCCACAATCTAAAATATCCATAAGGCAT  691

seq1  TTTCAATTACGTAGCTTTACAACCTACACATATAGAACTTTCTATAAGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTACGTAGCTTTACAACCTACACATATAGAACTTTCTATAAGCT  741

seq1  AAGGAAACCAACCATGAAAAATGTTAGTGCTGGCTAACAGTCTATCTGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACCAACCATGAAAAATGTTAGTGCTGGCTAACAGTCTATCTGCA  791

seq1  CTTAATGTCTTGGTAGGTACTGACAAACTACCCCTCATATGAAAAGGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTCTTGGTAGGTACTGACAAACTACCCCTCATATGAAAAGGCCT  841

seq1  AATTTATATACTGATATGTGATTTTCTCATATTCACCATTCTTTTCTACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATACTGATATGTGATTTTCTCATATTCACCATTCTTTTCTACC  891

seq1  ATCAGTCTTATAACCTCTGCCAAGTCTACCCCCATGCTGGTATAGCTTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCTTATAACCTCTGCCAAGTCTACCCCCATGCTGGTATAGCTTCC  941

seq1  CGTGAGTACTGAGTTGGGAGGTGGGTAGCACTATTATTGTATTGGTTTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGTACTGAGTTGGGAGGTGGGTAGCACTATTATTGTATTGGTTTAA  991

seq1  AATGTTCAACATTTGCAATTTTTTATTATTTGAAAACCCCATAGAATTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCAACATTTGCAATTTTTTATTATTTGAAAACCCCATAGAATTAA  1041

seq1  ACAATGCATTTTGATCATATCCTTCTACCACTATGGCCCTGTTGGAACAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCATTTTGATCATATCCTTCTACCACTATGGCCCTGTTGGAACAT  1091

seq1  GGTCCAGGGATTAAGTCATGTGAGAATTC  1127
      |||||||||||||||||||||||||||||
seq2  GGTCCAGGGATTAAGTCATGTGAGAATTC  1120