BAC Information

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BAC

Clone NameB6Ng01-120A03
ChromosomeX (Build37)
Map Location 114,243,836 - 114,345,695
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039277, Cpxcr1, EG624153, LOC100039300, EG665045, LOC100039319
Downstream geneLOC624284, LOC665066, EG624388, ENSMUSG00000072994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120A03.bB6Ng01-120A03.g
ACCDH924070DH924071
length1,1281,036
definitionDH924070|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A03, 5' end.DH924071|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,344,561 - 114,345,695)(114,243,836 - 114,244,753)
sequence
gaattcattttaaaaagttaaagaatacaactaaagtttattttacatga
ttgatagattaaagttctaacttttgttgccataatttcttcttcttctt
cttttttttttttttttgtttgtttgtttgttttttggtttttggttttt
tggttttttggttttttggtttttttggttcttcgagacagggtttctct
ctatagtcctggctgtcctggaactcactttgtagaccaggctgggctct
aactcagaaatctgcctgcctgtgcctccccagagctgggattaaaggct
tgtaccaccacacccagttccataatttcttaataaacactataaattat
aagtacattaaataataattgatgataaatgatggaagataatgtcaaaa
atttcttttttgtttcattagctgtaaattttacaaggttaacaattacc
ttatgacatgaaactcattaagctttttatgctttttattgaaaagtagg
gaaactccaattctagaccaagataatggcattcattagctctgtcactc
agttgatctaggatgagaactgaactcaactaatcacacagattaaaagt
atgtaccacaaatgtagcttaccttacaagtgagccagctattactcaca
atgattcacctttaatatttgacaaattgaaagagttgaagcttttaagc
taacatcccagttgattcccagtcatctgtccaacaggcacgtttagaaa
attaaagtctcaatggtgagttaagggtttgacacttattctaataaata
gtaattatagttaattagacatttaaagggggagataactcaaatctgca
tagtttcacactcattaaccaggttttatttcaaggaggtatgttttgaa
aggcatgagagtgtttttataaactcattgcactttcttcatctctgttt
ctagtgattactctaatatgttgatcacaaaatgggttgaggaggttgta
tgctatactgctggattgtattatatgtgcagcatagatattaagtcatt
tatggtgatttatgaatgtttttctagtctataccaagtatatcagaaag
gttatgctggggctaatttcaaatttat
gaattcctactgtgccatgtaggtgaattatgaccatcaggtttctgacc
tcagctcaactggataccagcctgaaattccccaccaatacccaagatgc
aattcccagacctcatgaagctcaagaagatggaagaccacagtgtgaat
acgtcagtacttcagagaaccaggatgaaaatacccatgggaggagatac
agagaccaagtttgtagcagaaactgaggaaaaggccatccagtgactgt
cccacctgggtatccatcccatatagttatcaaactcagacactattgtg
gatgccaacaattgcttggtgacaggtgcctgatatagctgtctcctgag
agtctttgccacagcctgacaaatacagaagtgactgctcacagccatcc
attgaactgagcgcagggtccccaaaggaggagctagaaaatggacccta
ggagctgaaggggtttgcagcctcatatgaggaacaacaatatgaaccaa
ccagtatccccagagctcccagggactaaatcaccaaataaagagcacac
atggagggactcaagtcttcagctgcatttgtagcagaggatggccttgt
gggacatcaatgagaggagagtttcaaattctcaagggatagccatactt
cagcatcttaccaattcacgtgtgattttgtggcttttaaagttacatca
ctcaaagatgtaatcggtaaccaaatttaagtattaagctaaatttaaat
actaggtttaagaggatgaagagacagccttctggttaagagtcttacac
gcattcgcaactggccaggaaagacgcaacaaaccggaatcttctgcggc
aaagctttattgcttacatcttcagagcagagaggaagagcgtggcagag
agaggcagaggggaagagagagagagatgcagagagacgcaagagagagg
cagagagaggggcagagagagagaggcgagagcaaggagagagccgagga
aagacgagagaagagacgatagtcgatagacgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_114344561_114345695
seq2: B6Ng01-120A03.b_43_1170 (reverse)

seq1  ATAATATTTGAATATGGCCCAAGCATAAACCTTTCTGATATACTT-GTAT  49
      |||| |||||||  | |||| ||||| |||||||||||||||||| ||||
seq2  ATAA-ATTTGAAATTAGCCCCAGCAT-AACCTTTCTGATATACTTGGTAT  48

seq1  AAGACTAGAAAACAATTCATAAATCA-CATAAATGACTTAATATTCTATG  98
       |||||||||||  |||||||||||| |||||||||||||||| ||||||
seq2  -AGACTAGAAAAACATTCATAAATCACCATAAATGACTTAATA-TCTATG  96

seq1  CTGCCACATATAATACAATCCAGCAGTTATAGCATACACACTCCTCAACC  148
      ||| |||||||||||||||||||||| |||||||||||  ||||||||||
seq2  CTG-CACATATAATACAATCCAGCAG-TATAGCATACAACCTCCTCAACC  144

seq1  CATTTTGTGATCAACATATTAAGAGTAATCACTAAGAAACAGAGATGAAG  198
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  CATTTTGTGATCAACATATT-AGAGTAATCACT-AGAAACAGAGATGAAG  192

seq1  AAAGTGCAATTGAGTTTATAAAAACACTCTCATGCCTTTCAAAACATACC  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCAA-TGAGTTTATAAAAACACTCTCATGCCTTTCAAAACATACC  241

seq1  TCCTTGAAATAAAACCTGGTTAATGAGTGTGAAACTATGCAGATTTGAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAATAAAACCTGGTTAATGAGTGTGAAACTATGCAGATTTGAGT  291

seq1  TATCTCCCCCCTTAAATGTCTAATTAACTATAATTACTATTTATTAGAAT  348
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCCCCTTTAAATGTCTAATTAACTATAATTACTATTTATTAGAAT  341

seq1  AAGTGTCAAACCCTTAACTCACCATTGAGACTTTAATTTTCTAAACGTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCAAACCCTTAACTCACCATTGAGACTTTAATTTTCTAAACGTGC  391

seq1  CTGTTGGACAGATGACTGGGAATCAACTGGGATGTTAGCTTAAAAGCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGACAGATGACTGGGAATCAACTGGGATGTTAGCTTAAAAGCTTC  441

seq1  AACTCTTTCAATTTGTCAAATATTAAAGGTGAATCATTGTGAGTAATAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCAATTTGTCAAATATTAAAGGTGAATCATTGTGAGTAATAGC  491

seq1  TGGCTCACTTGTAAGGTAAGCTACATTTGTGGTACATACTTTTAATCTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACTTGTAAGGTAAGCTACATTTGTGGTACATACTTTTAATCTGT  541

seq1  GTGATTAGTTGAGTTCAGTTCTCATCCTAGATCAACTGAGTGACAGAGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAGTTGAGTTCAGTTCTCATCCTAGATCAACTGAGTGACAGAGCT  591

seq1  AATGAATGCCATTATCTTGGTCTAGAATTGGAGTTTCCCTACTTTTCAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGCCATTATCTTGGTCTAGAATTGGAGTTTCCCTACTTTTCAAT  641

seq1  AAAAAGCATAAAAAGCTTAATGAGTTTCATGTCATAAGGTAATTGTTAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCATAAAAAGCTTAATGAGTTTCATGTCATAAGGTAATTGTTAAC  691

seq1  CTTGTAAAATTTACAGCTAATGAAACAAAAAAGAAATTTTTGACATTATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAAATTTACAGCTAATGAAACAAAAAAGAAATTTTTGACATTATC  741

seq1  TTCCATCATTTATCATCAATTATTATTTAATGTACTTATAATTTATAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCATTTATCATCAATTATTATTTAATGTACTTATAATTTATAGTG  791

seq1  TTTATTAAGAAATTATGGAACTGGGTGTGGTGGTACAAGCCTTTAATCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAGAAATTATGGAACTGGGTGTGGTGGTACAAGCCTTTAATCCC  841

seq1  AGCTCTGGGGAGGCACAGGCAGGCAGATTTCTGAGTTAGAGCCCAGCCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGGGAGGCACAGGCAGGCAGATTTCTGAGTTAGAGCCCAGCCTG  891

seq1  GTCTACAAAGTGAGTTCCAGGACAGCCAGGACTATAGAGAGAAACCCTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAGTGAGTTCCAGGACAGCCAGGACTATAGAGAGAAACCCTGT  941

seq1  CTCGAAGAACCAAAAAAACCAAAAAACCAAAAAACCAAAAAACCAAAAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGAACCAAAAAAACCAAAAAACCAAAAAACCAAAAAACCAAAAAC  991

seq1  CAAAAAACAAACAAACAAACAAAAAAAAAAAAAAAAGAAGAAGAAGAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACAAACAAACAAACAAAAAAAAAAAAAAAAGAAGAAGAAGAAGA  1041

seq1  AATTATGGCAACAAAAGTTAGAACTTTAATCTATCAATCATGTAAAATAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGCAACAAAAGTTAGAACTTTAATCTATCAATCATGTAAAATAA  1091

seq1  ACTTTAGTTGTATTCTTTAACTTTTTAAAATGAATTC  1135
      |||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTTGTATTCTTTAACTTTTTAAAATGAATTC  1128

seq1: chrX_114243836_114244753
seq2: B6Ng01-120A03.g_187_1100

seq1  CAAGAAGATGGAAGACCACAGTGTGAATACGTCAGTACTTCAGAGAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGATGGAAGACCACAGTGTGAATACGTCAGTACTTCAGAGAACCA  50

seq1  GGATGAAAATACCCATGGGAGGAGATACAGAGACCAAGTTTGTAGCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAAATACCCATGGGAGGAGATACAGAGACCAAGTTTGTAGCAGAA  100

seq1  ACTGAGGAAAAGGCCATCCAGTGACTGTCCCACCTGGGTATCCATCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGAAAAGGCCATCCAGTGACTGTCCCACCTGGGTATCCATCCCAT  150

seq1  ATAGTTATCAAACTCAGACACTATTGTGGATGCCAACAATTGCTTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATCAAACTCAGACACTATTGTGGATGCCAACAATTGCTTGGTGA  200

seq1  CAGGTGCCTGATATAGCTGTCTCCTGAGAGTCTTTGCCACAGCCTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCTGATATAGCTGTCTCCTGAGAGTCTTTGCCACAGCCTGACAA  250

seq1  ATACAGAAGTGACTGCTCACAGCCATCCATTGAACTGAGCGCAGGGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAGTGACTGCTCACAGCCATCCATTGAACTGAGCGCAGGGTCCC  300

seq1  CAAAGGAGGAGCTAGAAAATGGACCCTAGGAGCTGAAGGGGTTTGCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGGAGCTAGAAAATGGACCCTAGGAGCTGAAGGGGTTTGCAGCC  350

seq1  TCATATGAGGAACAACAATATGAACCAACCAGTATCCCCAGAGCTCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGAGGAACAACAATATGAACCAACCAGTATCCCCAGAGCTCCCAG  400

seq1  GGACTAAATCACCAAATAAAGAGCACACATGGAGGGACTCAAGTCTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAATCACCAAATAAAGAGCACACATGGAGGGACTCAAGTCTTCAG  450

seq1  CTGCATTTGTAGCAGAGGATGGCCTTGTGGGACATCAATGAGAGGAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTGTAGCAGAGGATGGCCTTGTGGGACATCAATGAGAGGAGAGT  500

seq1  TTCAAATTCTCAAGGGATAGCCATACTTCAGCATCTTACCAATTCACGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTCTCAAGGGATAGCCATACTTCAGCATCTTACCAATTCACGTG  550

seq1  TGATTTTGTGGCTTTTAAAGTTACATCACTCAAAGATGTAATCGGTAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGTGGCTTTTAAAGTTACATCACTCAAAGATGTAATCGGTAACC  600

seq1  AAATTTAAGTATTAAGCTAAATTTAAATACTAGGTTTAAGAGGATGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAGTATTAAGCTAAATTTAAATACTAGGTTTAAGAGGATGAAGA  650

seq1  GACAGCCTTCTGGTTAAGAGTCTTACACGCATTCGCAACTGGCCAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTTCTGGTTAAGAGTCTTACACGCATTCGCAACTGGCCAGGAAA  700

seq1  GACGCAACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCT  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GACGCAACAAACCGGAATCTTCTGCGGC-AAAGCTTTATTGCTTACATCT  749

seq1  TCAGGAGCAAGAGAGGAAGAGCGTGGCAGAGAGAGGCAGAGGGGAAGAGA  800
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCA-GAGC-AGAGAGGAAGAGCGTGGCAGAGAGAGGCAGAGGGGAAGAGA  797

seq1  GAGAGAGATGCAGAGAGACGCAGAGAGAGAGGCAGAGAGAGGGGCAGAGA  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGAGAGATGCAGAGAGACGCA-AGAGAGAGGCAGAGAGAGGGGCAGAGA  846

seq1  GAGAGAGGCAGAGAGCAGAGGAAGAGAGCAGAGGAAAAGACGAAGAGAAA  900
      ||||||||| ||||||| ||| ||||||| |||| ||||||| |||| ||
seq2  GAGAGAGGC-GAGAGCA-AGG-AGAGAGCCGAGG-AAAGACG-AGAG-AA  890

seq1  GAGACGA------AGAGACGAAGA  918
      |||||||      | |||||||||
seq2  GAGACGATAGTCGATAGACGAAGA  914