BAC Information

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BAC

Clone NameB6Ng01-123J12
ChromosomeX (Build37)
Map Location 159,896,227 - 160,020,648
singlet/doubletdoublet
Overlap geneEG637051, Grpr
Upstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610
Downstream gene1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123J12.bB6Ng01-123J12.g
ACCDH926716DH926717
length989783
definitionDH926716|Mus musculus domesticus DNA, BAC clone: B6Ng01-123J12, 5' end.DH926717|Mus musculus domesticus DNA, BAC clone: B6Ng01-123J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,896,227 - 159,897,143)(160,019,864 - 160,020,648)
sequence
gaattcactagtaaggggagttgaggggttttttttctaaagattttatt
tattttatgtatatgagtacactgtaactctcttcagacacaccagaaga
ggacattggttctcattacagatggctgtgagccaccatgtagtttctgg
gaattgaactcaggacttctggaagagcagtcagtgttcctaattgctga
gccatctctccagccccttaaatagtttttttctttgaatctttttagaa
tttgtctgctatagatagtttatctaatgtattggcatattactatttgt
aaaaatattttatgtagtcaatttccaacttattgtgaattgtcacttat
cacttatgtttttatgatttcctgatggtaccaaagcaattcattgagag
taaacttgagactctgagtttcttttttttttttacattagatattttct
ttatttacatttcaaatgttatcccctttcctagtttcccctctgaaaac
cccatatctcctcccctctccccctgctcaccaacccacccattcccact
tttctgtcctggcattcccctatactagagaattcagccttcttaggacc
aagggcctctcctcccattgatgaacgacaaggtcatcctctgctacata
tgcagctggagccattcgtaagaaaaacaaacaaacaaacaaacaaacaa
acatgtgttttcttaaaaaaacatcatgtgctttcttttgttggtggttt
agtcccagggagctctgggggtactggttggttcatattgttgttcttcc
tatggggctgcaaaccccttcagctcattgggtcctttctctagctcctc
cattggacaccctgtgcttcgtccaatggatggctatccacttctgtact
tgtcaggcactggcagaagcctctcaggagacagctatatcagcttctgt
cagcaaggacttgttggcatctacaatagtgtctgggtt
gaattcaatagcatcttattgacaatgtgtagcttggagagcttttactc
taaaccttgacaagtctttgcatctgaggtttattggagcactcagaggg
gggctaagatagcgaatctataacccatctctttctgcagtgttcaaaag
caaacaaggagtgattatcaagcagaccgccccgatctggggacagcctc
aggactccttgttcactttaacaattaggaaaagaagatcagcctgaact
ctaattgtccttaaacaaaccatgcagaactgaattggcttctgggcaat
gtacaaagcctgagatgatgggaacagctgaattggaccacaccttctga
gtctctaggctagagcatggatgatgaatcttcaggagaaaaaaaaacat
gtatcttttcattgcaagttccactacttgatgaattatatacgcccaca
ttcttaatcattttagaaaatgtgatttagaaataactataaaatgttct
agaagtggatgctcacagtcagctactggatggatcacagggcccccaat
ggaagagctagagaaagcacttaaggagctaaaggggtctgcaaccctat
aggtggaacaacaatatgaactaaccagtaccccacagagctcgtgtttc
tagctgcatatgtatcagaagatggcctagtcggccatcattggaaagag
atgcccatcggtcttgcaaactttatatgcctcagtacaggggacgccag
ggcaagaagtgggagtgggtgggtaggggagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159896227_159897143
seq2: B6Ng01-123J12.b_50_966

seq1  GAATTCACTAGTAAGGGGAGTTGAGGGGTTTTTTTTCTAAAGATTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGTAAGGGGAGTTGAGGGGTTTTTTTTCTAAAGATTTTATT  50

seq1  TATTTTATGTATATGAGTACACTGTAACTCTCTTCAGACACACCAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGTATATGAGTACACTGTAACTCTCTTCAGACACACCAGAAGA  100

seq1  GGACATTGGTTCTCATTACAGATGGCTGTGAGCCACCATGTAGTTTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGGTTCTCATTACAGATGGCTGTGAGCCACCATGTAGTTTCTGG  150

seq1  GAATTGAACTCAGGACTTCTGGAAGAGCAGTCAGTGTTCCTAATTGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAACTCAGGACTTCTGGAAGAGCAGTCAGTGTTCCTAATTGCTGA  200

seq1  GCCATCTCTCCAGCCCCTTAAATAGTTTTTTTCTTTGAATCTTTTTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTCCAGCCCCTTAAATAGTTTTTTTCTTTGAATCTTTTTAGAA  250

seq1  TTTGTCTGCTATAGATAGTTTATCTAATGTATTGGCATATTACTATTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGCTATAGATAGTTTATCTAATGTATTGGCATATTACTATTTGT  300

seq1  AAAAATATTTTATGTAGTCAATTTCCAACTTATTGTGAATTGTCACTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTTATGTAGTCAATTTCCAACTTATTGTGAATTGTCACTTAT  350

seq1  CACTTATGTTTTTATGATTTCCTGATGGTACCAAAGCAATTCATTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATGTTTTTATGATTTCCTGATGGTACCAAAGCAATTCATTGAGAG  400

seq1  TAAACTTGAGACTCTGAGTTTCTTTTTTTTTTTTACATTAGATATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTGAGACTCTGAGTTTCTTTTTTTTTTTTACATTAGATATTTTCT  450

seq1  TTATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCCTCTGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCCTCTGAAAAC  500

seq1  CCCATATCTCCTCCCCTCTCCCCCTGCTCACCAACCCACCCATTCCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCTCCTCCCCTCTCCCCCTGCTCACCAACCCACCCATTCCCACT  550

seq1  TTTCTGTCCTGGCATTCCCCTATACTAGAGAATTCAGCCTTCTTAGGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCCTGGCATTCCCCTATACTAGAGAATTCAGCCTTCTTAGGACC  600

seq1  AAGGGCCTCTCCTCCCATTGATGAACGACAAGGTCATCCTCTGCTACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCTCTCCTCCCATTGATGAACGACAAGGTCATCCTCTGCTACATA  650

seq1  TGCAGCTGGAGCCATTCGTAAGAAAAACAAACAAACAAACAAACAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGGAGCCATTCGTAAGAAAAACAAACAAACAAACAAACAAACAA  700

seq1  ACATGTGTTTTCTTAAAAAAACATCATGTGCTTTCTTTTGTTGGTGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTTTTCTTAAAAAAACATCATGTGCTTTCTTTTGTTGGTGGTTT  750

seq1  AGTCCCAGGGAGCTCTGGGGGTACTGGTTGGTTCATATTGTTGTTCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGGGAGCTCTGGGGGTACTGGTTGGTTCATATTGTTGTTCTTCC  800

seq1  TATGGGGCTGCAAACCCCTTCAGCTCATTGGGTCCTTTCTCTAGCTCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGCTGCAAACCCCTTCAGCTCATTGGGTCCTTTCTCTAGCTCCTC  850

seq1  CATTGGACACCCTGTGCTCCGTCCAATGGATGGCTATCCACTTCTGTACT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATTGGACACCCTGTGCTTCGTCCAATGGATGGCTATCCACTTCTGTACT  900

seq1  TGTCAGGCACTGGCAGA  917
      |||||||||||||||||
seq2  TGTCAGGCACTGGCAGA  917

seq1: chrX_160019864_160020648
seq2: B6Ng01-123J12.g_68_850 (reverse)

seq1  AACTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTA  50
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  AACTCCCCTACCCACCCACTCCCACTTCTT-GCCCTGGCG-TCCCCTGTA  48

seq1  CTGAGGCATATAAAGTTTGCAAGACCGATGGGCATCTCTTTCCAATGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCATATAAAGTTTGCAAGACCGATGGGCATCTCTTTCCAATGATG  98

seq1  GCCGACTAGGCCATCTTCTGATACATATGCAGCTAGAAACACGAGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACTAGGCCATCTTCTGATACATATGCAGCTAGAAACACGAGCTCTG  148

seq1  TGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACC  198

seq1  CCTTTAGCTCCTTAAGTGCTTTCTCTAGCTCTTCCATTGGGGGCCCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCTCCTTAAGTGCTTTCTCTAGCTCTTCCATTGGGGGCCCTGTG  248

seq1  ATCCATCCAGTAGCTGACTGTGAGCATCCACTTCTAGAACATTTTATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCAGTAGCTGACTGTGAGCATCCACTTCTAGAACATTTTATAGT  298

seq1  TATTTCTAAATCACATTTTCTAAAATGATTAAGAATGTGGGCGTATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAATCACATTTTCTAAAATGATTAAGAATGTGGGCGTATATAA  348

seq1  TTCATCAAGTAGTGGAACTTGCAATGAAAAGATACATGTTTTTTTTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAGTAGTGGAACTTGCAATGAAAAGATACATGTTTTTTTTTCTC  398

seq1  CTGAAGATTCATCATCCATGCTCTAGCCTAGAGACTCAGAAGGTGTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATTCATCATCCATGCTCTAGCCTAGAGACTCAGAAGGTGTGGTC  448

seq1  CAATTCAGCTGTTCCCATCATCTCAGGCTTTGTACATTGCCCAGAAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGCTGTTCCCATCATCTCAGGCTTTGTACATTGCCCAGAAGCCA  498

seq1  ATTCAGTTCTGCATGGTTTGTTTAAGGACAATTAGAGTTCAGGCTGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTCTGCATGGTTTGTTTAAGGACAATTAGAGTTCAGGCTGATCT  548

seq1  TCTTTTCCTAATTGTTAAAGTGAACAAGGAGTCCTGAGGCTGTCCCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTAATTGTTAAAGTGAACAAGGAGTCCTGAGGCTGTCCCCAGA  598

seq1  TCGGGGCGGTCTGCTTGATAATCACTCCTTGTTTGCTTTTGAACACTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGCGGTCTGCTTGATAATCACTCCTTGTTTGCTTTTGAACACTGCA  648

seq1  GAAAGAGATGGGTTATAGATTCGCTATCTTAGCCCCCCTCTGAGTGCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGATGGGTTATAGATTCGCTATCTTAGCCCCCCTCTGAGTGCTCC  698

seq1  AATAAACCTCAGATGCAAAGACTTGTCAAGGTTTAGAGTAAAAGCTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCTCAGATGCAAAGACTTGTCAAGGTTTAGAGTAAAAGCTCTCC  748

seq1  AAGCTACACATTGTCAATAAGATGCTATTGAATTC  785
      |||||||||||||||||||||||||||||||||||
seq2  AAGCTACACATTGTCAATAAGATGCTATTGAATTC  783