BAC Information

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BAC

Clone NameB6Ng01-125L09
ChromosomeX (Build37)
Map Location 61,327,419 - 61,473,316
singlet/doubletdoublet
Overlap geneEG627470, 3830417A13Rik
Upstream geneLOC666729
Downstream geneSlitrk4, LOC100040011, Ctag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125L09.bB6Ng01-125L09.g
ACCDH928269DH928270
length702862
definitionDH928269|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L09, 5' end.DH928270|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,327,419 - 61,328,120)(61,472,751 - 61,473,316)
sequence
gaattcattagtaaaattaaatctatctatgaattctatgccctaacccc
tatttaatgtatagcttttgtacttgcaggattagctatacatgctcatg
tgtatattagggtactatattatttatattatttacattaataatcaagt
tagaatcacttgaatgagcttgtagccattgtacagaccccccagttctc
tccactggaatgttattggtagcaattttaatttggtaagatcacaaact
attttaccaattatcttggggtattgcactgagagaatcatgatgttctt
caattccaggtgtaatccctaagcacaaaaagaaaaaaaaaattcgatgt
gtgaggttacttaagcataaataatctatgaaacacttgcttttagtgtt
taatccatgaaacacttgcttttagtgttgtgattgctattgttttccgt
ttttttgtttttgtttgtgtttttttttgtttttttttgttgttgttttt
gtattctctacctccccaagccatcaccaacatctaaagaaatgcaatgt
aagacattttgagaaaaatgttcttttgatctgactcaaatgtatttatc
ttctccttgactgagaggagtctattgcatgccctttcaatcttagcaga
tctggtgatctctctctagctctctctctctctctctctctctctctctc
tc
gaattccataccagcaaaaacaagggaagcacacagaaactcacacacac
taacactaccagcatccaaataacagaaattaccaatgacaattcattaa
tatctcaaaaccaatggactcaatttcccaataaaaagtcacagactaac
agaatggatgtaaaaacaggatccatcactctgctgcatgcaagaataca
ggaatagagatattacctcagattaaagggctgaaaaattttattccaag
caaatggactcagcagctgattcagacagatgcagacaaccacagccaaa
caatagatggagcttggggactgttagggacgaataggaggaaggattgc
agctcttaaggggataagaactacaaaagaagaccaacagagtcaactaa
cctggacccttgggctcttagagtctagaccaccaaccacatcttgtatc
taggcctccccatacatatgtggcccatgtgttgtttggtcttcatgtga
gtcctgaataaactgaagcagggactgtcccaaaaaccttttgcctgtat
gtgggatatatttttctagctgggctgccgtgtctggcctcagtgggaga
ggatgcccctaatcttacagagaattgatgtgccagggtcagggtgtatg
tgtgtgaaatacccagggggtccttaccctctcagatgagaaggagaaga
ggcaatgtggggaaggatgttggaggggtgtgaccaggtgaaaaagttta
aaataatatttaaaaaagccaaaggaaagaaaaactaaccaaattcttta
attttctacgtctaaagcagcattatggatattacgattgttccatattt
actgttgaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_61327419_61328120
seq2: B6Ng01-125L09.b_48_749

seq1  GAATTCATTAGTAAAATTAAATCTATCTATGAATTCTATGCCCTAACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGTAAAATTAAATCTATCTATGAATTCTATGCCCTAACCCC  50

seq1  TATTTAATGTATAGCTTTTGTACTTGCAGGATTAGCTATACATGCTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATGTATAGCTTTTGTACTTGCAGGATTAGCTATACATGCTCATG  100

seq1  TGTATATTAGGGTACTATATTATTTATATTATTTACATTAATAATCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTAGGGTACTATATTATTTATATTATTTACATTAATAATCAAGT  150

seq1  TAGAATCACTTGAATGAGCTTGTAGCCATTGTACAGACCCCCCAGTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCACTTGAATGAGCTTGTAGCCATTGTACAGACCCCCCAGTTCTC  200

seq1  TCCACTGGAATGTTATTGGTAGCAATTTTAATTTGGTAAGATCACAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGAATGTTATTGGTAGCAATTTTAATTTGGTAAGATCACAAACT  250

seq1  ATTTTACCAATTATCTTGGGGTATTGCACTGAGAGAATCATGATGTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCAATTATCTTGGGGTATTGCACTGAGAGAATCATGATGTTCTT  300

seq1  CAATTCCAGGTGTAATCCCTAAGCACAAAAAGAAAAAAAAAATTCGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCAGGTGTAATCCCTAAGCACAAAAAGAAAAAAAAAATTCGATGT  350

seq1  GTGAGGTTACTTAAGCATAAATAATCTATGAAACACTTGCTTTTAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTACTTAAGCATAAATAATCTATGAAACACTTGCTTTTAGTGTT  400

seq1  TAATCCATGAAACACTTGCTTTTAGTGTTGTGATTGCTATTGTTTTCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCATGAAACACTTGCTTTTAGTGTTGTGATTGCTATTGTTTTCCGT  450

seq1  TTTTTTGTTTTTGTTTGTGTTTTTTTTTGTTTTTTTTTGTTGTTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTGTTTGTGTTTTTTTTTGTTTTTTTTTGTTGTTGTTTTT  500

seq1  GTATTCTCTACCTCCCCAAGCCATCACCAACATCTAAAGAAATGCAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTCTACCTCCCCAAGCCATCACCAACATCTAAAGAAATGCAATGT  550

seq1  AAGACATTTTGAGAAAAATGTTCTTTTGATCTGACTCAAATGTATTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTTGAGAAAAATGTTCTTTTGATCTGACTCAAATGTATTTATC  600

seq1  TTCTCCTTGACTGAGAGGAGTCTATTGCATGCCCTTTCAATCTTAGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGACTGAGAGGAGTCTATTGCATGCCCTTTCAATCTTAGCAGA  650

seq1  TCTGGTGATCTCTCTCTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGATCTCTCTCTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  700

seq1  TC  702
      ||
seq2  TC  702

seq1: chrX_61472751_61473316
seq2: B6Ng01-125L09.g_365_929 (reverse)

seq1  AATTTCAACAGTAAATATGAAACAATCGTAATAT-CATTATGACTGCTTT  49
      ||||||||||||||||||| |||||||||||||| ||| ||| |||||||
seq2  AATTTCAACAGTAAATATGGAACAATCGTAATATCCATAATG-CTGCTTT  49

seq1  AGACGTAGAAAATTAAAGAATTGGTTTATGTTTTTCTTTCCTTTGGCTTT  99
      |||||||||||||||||||||| | ||| |||||||||||||||||||||
seq2  AGACGTAGAAAATTAAAGAATTTGGTTA-GTTTTTCTTTCCTTTGGCTTT  98

seq1  TTTAAAATATTATTTTAAACTTTTTCACCTGGTCACA-CCCTCCAACATC  148
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTT-AAATATTATTTTAAACTTTTTCACCTGGTCACACCCCTCCAACATC  147

seq1  CTTCCCCACATTGCCTCTTCTCCTTCTCATCTGAGAGGGTAAGGACCCCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCACATTGCCTCTTCTCCTTCTCATCTGAGAGGGTAAGGACCCCC  197

seq1  TGGGTATTTCACACACATACACCCTGACCCTGGCACATCAATTCTCTGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATTTCACACACATACACCCTGACCCTGGCACATCAATTCTCTGTA  247

seq1  AGATTAGGGGCATCCTCTCCCACTGAGGCCAGACACGGCAGCCCAGCTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGGGGCATCCTCTCCCACTGAGGCCAGACACGGCAGCCCAGCTAG  297

seq1  AAAAATATATCCCACATACAGGCAAAAGGTTTTTGGGACAGTCCCTGCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATATCCCACATACAGGCAAAAGGTTTTTGGGACAGTCCCTGCTT  347

seq1  CAGTTTATTCAGGACTCACATGAAGACCAAACAACACATGGGCCACATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATTCAGGACTCACATGAAGACCAAACAACACATGGGCCACATAT  397

seq1  GTATGGGGAGGCCTAGATACAAGATGTGGTTGGTGGTCTAGACTCTAAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGGAGGCCTAGATACAAGATGTGGTTGGTGGTCTAGACTCTAAGA  447

seq1  GCCCAAGGGTCCAGGTTAGTTGACTCTGTTGGTCTTCTTTTGTAGTTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGGGTCCAGGTTAGTTGACTCTGTTGGTCTTCTTTTGTAGTTCTT  497

seq1  ATCCCCTTAAGAGCTGCAATCCTTCCTCCTATTCGTCCCTAACAGTCCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTAAGAGCTGCAATCCTTCCTCCTATTCGTCCCTAACAGTCCCC  547

seq1  AAGCTCCATCTATTGTTT  566
      ||||||||||||||||||
seq2  AAGCTCCATCTATTGTTT  565