BAC Information

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BAC

Clone NameB6Ng01-125N01
ChromosomeX (Build37)
Map Location 27,579,532 - 27,720,446
singlet/doubletdoublet
Overlap geneLOC22526
Upstream geneLOC100042154, EG664861, LOC664866, LOC100042175, LOC100039194, LOC100039208, EG664877, LOC664881, LOC100039240, LOC100039248, LOC100039073, EG664890, LOC664898
Downstream geneEG664906, LOC664917, LOC100039324, LOC100039334, LOC100039096, EG664923, LOC100039364, LOC100039377, LOC100039386, LOC100039127, EG664944, LOC100039423, LOC100039145, LOC664951, LOC100042071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125N01.bB6Ng01-125N01.g
ACCDH928345DH928346
length1,2211,068
definitionDH928345|Mus musculus domesticus DNA, BAC clone: B6Ng01-125N01, 5' end.DH928346|Mus musculus domesticus DNA, BAC clone: B6Ng01-125N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,719,208 - 27,720,446)(27,579,532 - 27,580,622)
sequence
gaattccaaggtaaatgctgatacacaatgccatattgaggtaagtgttt
ttatctgacactggatagaaaattgatgtctgagatcctacccaccacag
gaagttctgttgatgtacctgatgcattcatgtagctcctgatgtgaaac
atgtatggtattttcattattaagattctacctgttaccaaaaaacaaaa
caaaacaaaacaaaacaaaataaaactatgttgatatcagtgatgtatgc
tgtgatcagcaattttgatggagtccaagtttgattttattcctattgct
attggaaaccctactggtggctatgatctgtgctactgcttgaaagtata
atgaacctcaaggtccacaataatgcccaagtttattttgagggaagtat
tcttatctggttctggagatcagattaaaatctggaaacctacctgcaac
aggatcatcagttggtatttctcatgaatgtgtgtagctcacaacatcta
acatgtgataaatattgatacttgtgatcctgctggatacctgaagctac
tttgaagtcagtgatgcagctatgaccagcaatcatgatggggtctttta
ttcctgttgctaattgagacccaggtgatggctaagatctgtgttgtttc
ttgagaacctgatgaattcaaaggcccatagtgaaatgataggttatatt
gaggtacgtgttctcaataatggagatcagattgatatctaagatcctaa
cagcaacaacaaattctgttgatttcactgatacatgaatacattgcatg
atgttgactatgtaatgtgcaagatctttactgccacctgaaataatgtg
gatatcagtgatttatcctgcaactaaatgaggcaattatgacaatgatt
tattctgccctgtgaattgaggttgatgtcattgatatataactgtctac
acaccccatgggatgccctagtccatgctaccattcacaacctggtgctg
tgatccctgctgtccttggttaccatgttaatatcactatacatagttct
ttagaactggtggtgtatatcaatcatcattctgcctcaagtagcatgtt
taaactcaagtccatgatgcttcttggatatattgttatgttcaagaatc
cctgagctaaccagactaatgtgaaatttgaatattcgcttgttccacag
tgaattatagttctgagatat
gaattcatttttccattgtgtcatataaagaaaagcacagaggagtttta
gaaaagaaactgacttaatataaaattaatactgggtcaacgaaatactg
ttgcatgtacagaattttgtatacatatcacttagctttgaatacatgga
atgtagaaaagtttacatcatttttttcctctaaaaatcccttcaatgca
gttatgaaaatgcctcagtaataaataggatttactgtgaaaggaggacg
ttcgcaagtttgattctagtacccatttggaaaactaaccatggatggtt
gcttctacaatagcagcactgtggtaggcagagtgagaattgctaggact
tgctggctgcttatctagctacatgttcagtgaaagagcaggtcttacgg
gaataaggtggaaagaaatagagcaaaacccaacatcctcctctgccctc
cacatgtgtatatatgcaccacagacacaaatatacgaaaaaattaaaat
taagtttaattaatgtcacacctgttgaaaaagcaccattttcacttctg
taccacaggcaaaaataagtccatgatgctaaatcaaaaatatttgcaag
agtccgtgtcatgagtagatcttgggtgctgacctagtcccacaataccc
ctagtaagctcaaatcccaggtgctctaacactaccaggatcacaggaat
ggccccaacatcaggagtaactgagtccctaaggatccagggacacagga
actcctgccttgccagtggcatggattccttctggtctgaaatgcacttg
gatcagacctggggtactggctctgcacccactcttaaacacccataggg
agcatgactcccaggtattctgaaatgcccaggatcacaggatcacagag
gaagctcgactccaggagatcagacacacccaggacactggagttctgac
agagagcacagctgaggcacacatctttcccacactgtgtatctgggacc
ccacagaccaggaacaaatcatcctccgcagagcacagttcttgcagtat
gcactgtgttctgagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_27719208_27720446
seq2: B6Ng01-125N01.b_47_1267 (reverse)

seq1  ATATCTCAGAACACATAATTCAACATGATGTGACACAGCAGAATTTATCT  50
      ||||||||||||  ||||||||      ||||  |||   |||| |   |
seq2  ATATCTCAGAAC-TATAATTCA-----CTGTGGAACAAGCGAATAT---T  41

seq1  AAAATTTCACATAAGTCTGTGCTAGCCTCAGGGATCCTTGACATTAACAA  100
       ||||||||||| |||||| | ||| ||||||||| |||||   ||||||
seq2  CAAATTTCACATTAGTCTG-GTTAG-CTCAGGGATTCTTGAACATAACAA  89

seq1  TA-ATCCAAGAAGCATCATGGACTTTGGGTTTAAACATGGCTACTTGAGG  149
      || |||||||||||||||||||| ||| |||||||||| |||||||||||
seq2  TATATCCAAGAAGCATCATGGAC-TTGAGTTTAAACAT-GCTACTTGAGG  137

seq1  CAGAATGGATGATTGATAT-CACCACAGTTTCTACAGGAACTATGTAATA  198
      |||||| |||||||||||| ||||||   ||||| | ||||||||| |||
seq2  CAGAAT-GATGATTGATATACACCACCAGTTCTA-AAGAACTATGT-ATA  184

seq1  GTGATATTAACATGGTAACCAGGGACAGCAGGGATCACAGGCAACCAGGT  248
      ||||||||||||||||||||| ||||||||||||||||||   |||||||
seq2  GTGATATTAACATGGTAACCAAGGACAGCAGGGATCACAG--CACCAGGT  232

seq1  TGTGAATGGTAGCATGGACCTAGGGCAATCCCATGGGGTGTGTAGACAGT  298
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  TGTGAATGGTAGCATGGA-CTAGGGC-ATCCCATGGGGTGTGTAGACAGT  280

seq1  TATATATCAATGACATCAACCTCAATTCACAGGGCAGAATAAATCATTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCAATGACATCAACCTCAATTCACAGGGCAGAATAAATCATTGT  330

seq1  CATAATTGCCTCATTTAGTTGCAGGATAAATCACTGATATCCACATTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTGCCTCATTTAGTTGCAGGATAAATCACTGATATCCACATTATT  380

seq1  TCAGGTGGCAGTAAAGATCTTGCACATTACATAGTCAACATCATGCAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGCAGTAAAGATCTTGCACATTACATAGTCAACATCATGCAATG  430

seq1  TATTCATGTATCAGTGAAATCAACAGAATTTGTTGTTGCTGTTAGGATCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGTATCAGTGAAATCAACAGAATTTGTTGTTGCTGTTAGGATCT  480

seq1  TAGATATCAATCTGATCTCCATTATTGAGAACACGTACCTCAATATAACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATCAATCTGATCTCCATTATTGAGAACACGTACCTCAATATAACC  530

seq1  TATCATTTCACTATGGGCCTTTGAATTCATCAGGTTCTCAAGAAACAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTCACTATGGGCCTTTGAATTCATCAGGTTCTCAAGAAACAACA  580

seq1  CAGATCTTAGCCATCACCTGGGTCTCAATTAGCAACAGGAATAAAAGACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTAGCCATCACCTGGGTCTCAATTAGCAACAGGAATAAAAGACC  630

seq1  CCATCATGATTGCTGGTCATAGCTGCATCACTGACTTCAAAGTAGCTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATGATTGCTGGTCATAGCTGCATCACTGACTTCAAAGTAGCTTCA  680

seq1  GGTATCCAGCAGGATCACAAGTATCAATATTTATCACATGTTAGATGTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCAGCAGGATCACAAGTATCAATATTTATCACATGTTAGATGTTG  730

seq1  TGAGCTACACACATTCATGAGAAATACCAACTGATGATCCTGTTGCAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACACACATTCATGAGAAATACCAACTGATGATCCTGTTGCAGGT  780

seq1  AGGTTTCCAGATTTTAATCTGATCTCCAGAACCAGATAAGAATACTTCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCAGATTTTAATCTGATCTCCAGAACCAGATAAGAATACTTCCC  830

seq1  TCAAAATAAACTTGGGCATTATTGTGGACCTTGAGGTTCATTATACTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAAACTTGGGCATTATTGTGGACCTTGAGGTTCATTATACTTTC  880

seq1  AAGCAGTAGCACAGATCATAGCCACCAGTAGGGTTTCCAATAGCAATAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTAGCACAGATCATAGCCACCAGTAGGGTTTCCAATAGCAATAGG  930

seq1  AATAAAATCAAACTTGGACTCCATCAAAATTGCTGATCACAGCATACATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCAAACTTGGACTCCATCAAAATTGCTGATCACAGCATACATC  980

seq1  ACTGATATCAACATAGTTTTATTTTGTTTTGTTTTGTTTTGTTTTGTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATCAACATAGTTTTATTTTGTTTTGTTTTGTTTTGTTTTGTTTT  1030

seq1  TTGGTAACAGGTAGAATCTTAATAATGAAAATACCATACATGTTTCACAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAACAGGTAGAATCTTAATAATGAAAATACCATACATGTTTCACAT  1080

seq1  CAGGAGCTACATGAATGCATCAGGTACATCAACAGAACTTCCTGTGGTGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTACATGAATGCATCAGGTACATCAACAGAACTTCCTGTGGTGG  1130

seq1  GTAGGATCTCAGACATCAATTTTCTATCCAGTGTCAGATAAAAACACTTA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATCTCAGACATCAATTTTCTATCCAGTGTCAGATAAAAACACTTA  1180

seq1  CCTCAATATGGCATTGTGTATCAGCATTTACCTTGGAATTC  1239
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATATGGCATTGTGTATCAGCATTTACCTTGGAATTC  1221

seq1: chrX_27579532_27580622
seq2: B6Ng01-125N01.g_67_1134

seq1  GAATTCATTTTTCCATTGTGTCATATAAAGAAAAGCACAGAGGAGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTCCATTGTGTCATATAAAGAAAAGCACAGAGGAGTTTTA  50

seq1  GAAAAGAAACTGACTTAATATAAAATTAATACTGGGTCAACGAAATACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAACTGACTTAATATAAAATTAATACTGGGTCAACGAAATACTG  100

seq1  TTGCATGTACAGAATTTTGTATACATATCACTTAGCTTTGAATACATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGTACAGAATTTTGTATACATATCACTTAGCTTTGAATACATGGA  150

seq1  ATGTAGAAAAGTTTACATCATTTTTTTCCTCTAAAAATCCCTTCAATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAAAGTTTACATCATTTTTTTCCTCTAAAAATCCCTTCAATGCA  200

seq1  GTTATGAAAATGCCTCAGTAATAAATAGGATTTACTGTGAAAGGAGGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAAAATGCCTCAGTAATAAATAGGATTTACTGTGAAAGGAGGACG  250

seq1  TTCGCAAGTTTGATTCTAGTACCCATTTGGAAAACTAACCATGGATGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAAGTTTGATTCTAGTACCCATTTGGAAAACTAACCATGGATGGTT  300

seq1  GCTTCTACAATAGCAGCACTGTGGTAGGCAGAGTGAGAATTGCTAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACAATAGCAGCACTGTGGTAGGCAGAGTGAGAATTGCTAGGACT  350

seq1  TGCTGGCTGCTTATCTAGCTACATGTTCAGTGAAAGAGCAGGTCTTACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTGCTTATCTAGCTACATGTTCAGTGAAAGAGCAGGTCTTACGG  400

seq1  GAATAAGGTGGAAAGAAATAGAGCAAAACCCAACATCCTCCTCTGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGTGGAAAGAAATAGAGCAAAACCCAACATCCTCCTCTGCCCTC  450

seq1  CACATGTGTATATATGCACCACAGACACAAATATACGAAAAAATTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGTATATATGCACCACAGACACAAATATACGAAAAAATTAAAAT  500

seq1  TAAGTTTAATTAATGTCACACCTGTTGAAAAAGCACCATTTTCACTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAATTAATGTCACACCTGTTGAAAAAGCACCATTTTCACTTCTG  550

seq1  TACCACAGGCAAAAATAAGTCCATGATGCTAAATCAAAAATATTTGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGGCAAAAATAAGTCCATGATGCTAAATCAAAAATATTTGCAAG  600

seq1  AGTCCGTGTCATGAGTAGATCTTGGGTGCTGACCTAGTCCCACAATACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGTGTCATGAGTAGATCTTGGGTGCTGACCTAGTCCCACAATACCC  650

seq1  CTAGTAAGCTCAAATCCCAGGTGCTCTAACACTACCAGGATCACAGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGCTCAAATCCCAGGTGCTCTAACACTACCAGGATCACAGGAAT  700

seq1  GGCCCCAACATCAGGAGTAACTGAGTCCCTAAGGATCCAGGGACACAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAACATCAGGAGTAACTGAGTCCCTAAGGATCCAGGGACACAGGA  750

seq1  ACTCCTGCCTTGCCAGTGGCATGGATTCCTTCTGGTCTGAAAATGCACTT  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTCCTGCCTTGCCAGTGGCATGGATTCCTTCTGGTCTG-AAATGCACTT  799

seq1  GGATCAGACCTGGGGTACTGGCTCTGCACCCACTCTTAAAACACCCATAG  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGATCAGACCTGGGGTACTGGCTCTGCACCCACTCTT-AAACACCCATAG  848

seq1  GGAGCATGACTCCCAGGTATTCTGAAATGCCCAAGATCACAGGATCACAG  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGAGCATGACTCCCAGGTATTCTGAAATGCCCAGGATCACAGGATCACAG  898

seq1  AGGAAGCTCGACTCCCAGGAGATCAGACACACCCAGGAACACTGGAGTTC  950
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  AGGAAGCTCGACT-CCAGGAGATCAGACACACCCAGG-ACACTGGAGTTC  946

seq1  TGACAGAAGAGCACAGCTGAGGGCACAACATCTTTCCCAACAACCTGTGT  1000
      |||||| ||||||||||||| ||||| ||||||||||| |||  ||||||
seq2  TGACAG-AGAGCACAGCTGA-GGCAC-ACATCTTTCCC-ACA--CTGTGT  990

seq1  ATCTGGGACCCCCACAAGAACCAGGGAAACAAAATCATCCTCCCGGCCAG  1050
      |||||||| |||||||   ||||||  ||| ||||||||||||    |||
seq2  ATCTGGGA-CCCCACA--GACCAGG--AAC-AAATCATCCTCC---GCAG  1031

seq1  AGGCACAGGTTCCTTGCAGTATGCAACTGTGTCTAGAGAAA  1091
      | ||||||  | |||||||||||| |||||||   ||||||
seq2  A-GCACAG--TTCTTGCAGTATGC-ACTGTGTTCTGAGAAA  1068