BAC Information

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BAC

Clone NameB6Ng01-126P02
ChromosomeX (Build37)
Map Location 68,555,230 - 68,697,913
singlet/doubletdoublet
Overlap geneMtm1, Mtmr1, Cd99l2
Upstream geneIds, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993, Ppia-psx_466.1, EG628080, G630014P10Rik, LOC667013
Downstream geneLOC667017, Hmgb3, LOC100040549, Gpr50, LOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10, Gabra3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126P02.bB6Ng01-126P02.g
ACCDH929186DH929187
length1,125855
definitionDH929186|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P02, 5' end.DH929187|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,696,763 - 68,697,913)(68,555,230 - 68,556,082)
sequence
gaattcttcaaataattcatttttatagccttctgttacctggatatttc
tctgttgggaggtctttgattattctaattttattcatccatttatattt
tgacttttcataatcatcttaatagtttgtgtgctgctagaagtctatcc
atttcttctagcttgtctgatttgttggaacctgttgtccactgtagttt
cttatgattctttgtatttatttagtattcgttgcagtgtctcctgtccc
atttataattttgagtcattagagcagaaataaaggttttccatcttgtt
tactttttcaaaaagccaactccaggtttccttcctttgcgctcttcggc
cttgtctttcccctttggttctgtggaataacctaggacctctgtgtaaa
tgtatgcttacctctgagctttgcctccagcccactggaaccttaaatcc
attaaagcttcctgttgattttcttgtatagaattctttgtctttcctcc
tttctccacatcctcctagtcctgtgccacttcttcctcttcctctgtct
tttgagaccgagtcttactatcttggcaagtagtcccagctgactctcaa
atgcaaggtcctccccacctcagcttcctgagtgctggcccacactaggt
ggcccggcctttctagcttcttaacagcttttcctcttatgggccacgtt
tctgttgtcaaatgtgtgaaccttttaccaagcattcaattctgaaacac
ttccttctgaacattttatggtttaatatttaagcaaatataatttatcc
atttgcagttaattttatataaatgaaacccattggttttcatttcagaa
gtctaattattctagtaccttttctgaaaagatttgttcctttttgagtt
tctttgcatatgtataaaaatcacttgagcagatctgagtctttgagctc
ttcatctgtctgtgcctgcatctatctatctgccacatctttgacaatgt
actataaatgagccttatatagatagagtgatcattcccactttattctt
tttaaggttaaagctaatctaggtctgcttcccctcaaattaacatcagt
ggactatttctgaaagaggcaatca
gaattctttgttccagtgggcggtcagcagcacggccagttacttggcat
ctctgtggaagcgtgtctgctaacttgtaatactttacacagtaaacttg
gccactttttcctttttattccttgactttacacttgtgtatatagtctt
atattaagtaaaaacaaacaaacaaaaaaataaaccctctagggtctgtg
cggacggcagctctgctggcattcccagacttggactgtggcagcgctta
gtcactcttgccattgatgcaggagtcttttcttgccatggtgtgcatat
gtatttgcatgtttcttttaatgtaatgacttcctcctttgacactcacc
aaccaacatggtctggtagaaaccatgcattttgtcttccttgagagaat
agactcgacttttcatgatcttcttgcttgtttgttttgaatctagttcc
ccacagcttttgagttcaatgaaggctttttgattaccgttttggatcat
ctgtatagctgtcgatttggtactttcttattcaactgtgactcggctcg
agaaagacaggtgagcaaaacactactgctgatctaagaagaggatgagg
gtttgaggcactggtttcgctctcaacaaataggagtgattcttaaaagt
atacaagttctcccttgtgaaaaactaagtaaagggacttttaaaatgta
ttgagaattatatagagtatattttgataacattctttccaatccccagt
cccccctggttctatctcacttgagactaccccacccttgaatccatccc
atagacaaccacctaacccagacactattgcattatgccagcaagagctt
gctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_68696763_68697913
seq2: B6Ng01-126P02.b_48_1172 (reverse)

seq1  TGATTGCTTCTTTCCAGAAATAGTCAAATTTGATGTAAAATTTTGGGGGG  50
      ||||||| ||||| ||||||||||| |   |||||| ||  |||| ||||
seq2  TGATTGCCTCTTT-CAGAAATAGTCCA--CTGATGTTAA--TTTGAGGGG  45

seq1  AAGGCAGAACCTTAGATTAGCTTTTTAAAACCTTAAAAAGAATAAAGTGG  100
      || |||||  | ||||||||||||    ||||||||||||||||||||||
seq2  AA-GCAGA--CCTAGATTAGCTTT----AACCTTAAAAAGAATAAAGTGG  88

seq1  GATGAATCACTCTATCTAATATTAAGGCTCATTTTATAGTTAACATTTGT  150
      ||   |||||||||||| ||| ||||||||| ||||||||  ||| ||||
seq2  GAATGATCACTCTATCT-ATA-TAAGGCTCA-TTTATAGT--ACA-TTGT  132

seq1  CAAAGATGTGGCAGATAGATAGATGCAGGCAACAGAACAGAATGAAGAGC  200
      |||||||||||||||||||||||||||||| |||| |||| |||||||||
seq2  CAAAGATGTGGCAGATAGATAGATGCAGGC-ACAG-ACAG-ATGAAGAGC  179

seq1  TCAAAAGACCTCAGATCTGCTCAAGTGATTTTTTATACATATGCAAAGAA  250
      || ||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  TC-AAAGA-CTCAGATCTGCTCAAGTGA-TTTTTATACATATGCAAAGAA  226

seq1  ACTCAAAAAAGGAACAAATCTTTTCAGAAAAGGTACTAGAATAATTAGAC  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTC-AAAAAGGAACAAATCTTTTCAGAAAAGGTACTAGAATAATTAGAC  275

seq1  TTCTGAAATGAAAACCAATGGGTTTCATTTTATATAAAATTAACTGCAAA  350
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCTGAAATGAAAACCAATGGGTTTCA-TTTATATAAAATTAACTGCAAA  324

seq1  TGGATAAATTATATTTGCTTAAATATTAAACCATAAAATGTTCAGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAATTATATTTGCTTAAATATTAAACCATAAAATGTTCAGAAGGA  374

seq1  AGTGTTTCAGAATTGAATGCTTGGTAAAAGGTTCACACATTTGACAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCAGAATTGAATGCTTGGTAAAAGGTTCACACATTTGACAACAG  424

seq1  AAACGTGGCCCATAAGAGGAAAAGCTGTTAAGAAGCTAGAAAGGCCGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGGCCCATAAGAGGAAAAGCTGTTAAGAAGCTAGAAAGGCCGGGC  474

seq1  CACCTAGTGTGGGCCAGCACTCAGGAAGCTGAGGTGGGGAGGACCTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGTGTGGGCCAGCACTCAGGAAGCTGAGGTGGGGAGGACCTTGCA  524

seq1  TTTGAGAGTCAGCTGGGACTACTTGCCAAGATAGTAAGACTCGGTCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGTCAGCTGGGACTACTTGCCAAGATAGTAAGACTCGGTCTCAA  574

seq1  AAGACAGAGGAAGAGGAAGAAGTGGCACAGGACTAGGAGGATGTGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGGAAGAGGAAGAAGTGGCACAGGACTAGGAGGATGTGGAGAA  624

seq1  AGGAGGAAAGACAAAGAATTCTATACAAGAAAATCAACAGGAAGCTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAAGACAAAGAATTCTATACAAGAAAATCAACAGGAAGCTTTAA  674

seq1  TGGATTTAAGGTTCCAGTGGGCTGGAGGCAAAGCTCAGAGGTAAGCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAAGGTTCCAGTGGGCTGGAGGCAAAGCTCAGAGGTAAGCATAC  724

seq1  ATTTACACAGAGGTCCTAGGTTATTCCACAGAACCAAAGGGGAAAGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACAGAGGTCCTAGGTTATTCCACAGAACCAAAGGGGAAAGACAA  774

seq1  GGCCGAAGAGCGCAAAGGAAGGAAACCTGGAGTTGGCTTTTTGAAAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAAGAGCGCAAAGGAAGGAAACCTGGAGTTGGCTTTTTGAAAAAGT  824

seq1  AAACAAGATGGAAAACCTTTATTTCTGCTCTAATGACTCAAAATTATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGATGGAAAACCTTTATTTCTGCTCTAATGACTCAAAATTATAAA  874

seq1  TGGGACAGGAGACACTGCAACGAATACTAAATAAATACAAAGAATCATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGGAGACACTGCAACGAATACTAAATAAATACAAAGAATCATAA  924

seq1  GAAACTACAGTGGACAACAGGTTCCAACAAATCAGACAAGCTAGAAGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTACAGTGGACAACAGGTTCCAACAAATCAGACAAGCTAGAAGAAA  974

seq1  TGGATAGACTTCTAGCAGCACACAAACTATTAAGATGATTATGAAAAGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGACTTCTAGCAGCACACAAACTATTAAGATGATTATGAAAAGTC  1024

seq1  AAAATATAAATGGATGAATAAAATTAGAATAATCAAAGACCTCCCAACAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAATGGATGAATAAAATTAGAATAATCAAAGACCTCCCAACAG  1074

seq1  AGAAATATCCAGGTAACAGAAGGCTATAAAAATGAATTATTTGAAGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATCCAGGTAACAGAAGGCTATAAAAATGAATTATTTGAAGAATT  1124

seq1  C  1151
      |
seq2  C  1125

seq1: chrX_68555230_68556082
seq2: B6Ng01-126P02.g_70_924

seq1  GAATTCTTTGTTCCAGTGGGCGGTCAGCAGCACGGCCAGTTACTTGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCCAGTGGGCGGTCAGCAGCACGGCCAGTTACTTGGCAT  50

seq1  CTCTGTGGAAGCGTGTCTGCTAACTTGTAATACTTTACACAGTAAACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGAAGCGTGTCTGCTAACTTGTAATACTTTACACAGTAAACTTG  100

seq1  GCCACTTTTTCCTTTTTATTCCTTGACTTTACACTTGTGTATATAGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTTTTCCTTTTTATTCCTTGACTTTACACTTGTGTATATAGTCTT  150

seq1  ATATTAAGTAAAAACAAACAAACAAAAAAATAAACCCTCTAGGGTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGTAAAAACAAACAAACAAAAAAATAAACCCTCTAGGGTCTGTG  200

seq1  CGGACGGCAGCTCTGCTGGCATTCCCAGACTTGGACTGTGGCAGCGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACGGCAGCTCTGCTGGCATTCCCAGACTTGGACTGTGGCAGCGCTTA  250

seq1  GTCACTCTTGCCATTGATGCAGGAGTCTTTTCTTGCCATGGTGTGCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCTTGCCATTGATGCAGGAGTCTTTTCTTGCCATGGTGTGCATAT  300

seq1  GTATTTGCATGTTTCTTTTAATGTAATGACTTCCTCCTTTGACACTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCATGTTTCTTTTAATGTAATGACTTCCTCCTTTGACACTCACC  350

seq1  AACCAACATGGTCTGGTAGAAACCATGCATTTTGTCTTCCTTGAGAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACATGGTCTGGTAGAAACCATGCATTTTGTCTTCCTTGAGAGAAT  400

seq1  AGACTCGACTTTTCATGATCTTCTTGCTTGTTTGTTTTGAATCTAGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGACTTTTCATGATCTTCTTGCTTGTTTGTTTTGAATCTAGTTCC  450

seq1  CCACAGCTTTTGAGTTCAATGAAGGCTTTTTGATTACCGTTTTGGATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTTTTGAGTTCAATGAAGGCTTTTTGATTACCGTTTTGGATCAT  500

seq1  CTGTATAGCTGTCGATTTGGTACTTTCTTATTCAACTGTGACTCGGCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGCTGTCGATTTGGTACTTTCTTATTCAACTGTGACTCGGCTCG  550

seq1  AGAAAGACAGGTGAGCAAAACACTACTGCTGATCTAAGAAGAGGATGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACAGGTGAGCAAAACACTACTGCTGATCTAAGAAGAGGATGAGG  600

seq1  GTTTGAGGCACTGGTTTCGCTCTCAACAAATAGGAGTGATTCTT-AAAGT  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTTGAGGCACTGGTTTCGCTCTCAACAAATAGGAGTGATTCTTAAAAGT  650

seq1  ATACAAGTTCTCCCTTGTGAAAAACTAAGTAAAGGGACTTTTAAAATGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTTCTCCCTTGTGAAAAACTAAGTAAAGGGACTTTTAAAATGTA  700

seq1  TTGAGAATTATATAGAGTATATTTTGATAACATTCTTTCCAATCCCCAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATTATATAGAGTATATTTTGATAACATTCTTTCCAATCCCCAGT  750

seq1  CCCCCCTGGTTCTTATCTCACTTGAGACTACCCCACCC-TGAATCCATCC  798
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  CCCCCCTGGTTC-TATCTCACTTGAGACTACCCCACCCTTGAATCCATCC  799

seq1  CATAGACAACCACCAAACCCAGACACTATTGCA-TATGCCAGCAAGAGCT  847
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  CATAGACAACCACCTAACCCAGACACTATTGCATTATGCCAGCAAGAGCT  849

seq1  TGCTGA  853
      ||||||
seq2  TGCTGA  855