BAC Information

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BAC

Clone NameB6Ng01-127A17
ChromosomeX (Build37)
Map Location 126,536,971 - 126,680,762
singlet/doubletdoublet
Overlap geneDiap2
Upstream geneLOC100040550, LOC100040562, LOC100040570, LOC669120
Downstream geneLOC100040092, LOC665773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127A17.bB6Ng01-127A17.g
ACCDH929264DH929265
length1,104401
definitionDH929264|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A17, 5' end.DH929265|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,536,971 - 126,538,102)(126,680,356 - 126,680,762)
sequence
gaattcctatcaaataccttcggatcaactataggactcacaacagttca
taaataggaacttgaaattattccttcatagttctacagaacttcattta
agaagtacatgctatgttgcttagtatttgtttcattaattcatattttt
tttagtgtctaataggtgtttggttttttttttttggctgaataaaatat
gtctccttacatggaaaggtttatattctagttatgattatgaatttacc
actcctgcccatgcttacctcacagtaccttatacaaacagtcaggatta
tttagctcgaggtattttaggacaaacattctcagataatcatggttatg
aaacatttagttctagaggcatacattgtcaaccgtaaggaaaataatac
tcattaacatttattgatattttttactgtataaagattgttccatatta
tctgtcattcattcttcatatctttttgaagtatataatattttgaaggg
taatttgggaaaatatttcaatagttgaagctccagatggttaagtgaat
cccataagatctgatagaaagacagaactgggcattgagccggcaaagtt
tgattctggaggtcttttctgcatataaattccatgcaataaaccatttt
gtaaactttaatggaagtgaaaatacaaataatgttaaataagtcagttt
ctccccttgaagtgacaattgtaattaatagctgtatcgggaaatgatag
tgctaatttagtgatacttagaatcctctgagtgtagttccataagtgag
aaaaatcaccagaatgaatacaaagatgggtttaaatgttgctttatgaa
tccttatataattttcagagaataattagctattttgaggctcaggatac
aaagctgattttaataatatgtgccttataaagcaattattatacttaac
tagaaaactagttggctgagtagacttgagtgtaaagagcacagccagtt
tggtgatttatcttcaatatagaagattttctgtagatttgactttgcca
gacagcttttgactggtggtgatgaacaaacataccatctgtacgttctt
ctca
attttcttagcttttatgttcaatgtagacagggctaatggtttctagaa
aactttgtagccatttcagttttccacagacagtgatatgattcacttct
cagagctattcatggtaagaactagaaattaagagtttttgaagcaacaa
gatcctatttcactcttagtatacatgaacgcttcatgtcatggttaata
acagagtttgttcaggactagggaagaaacaactccatgggaaataatgt
agagccaactagtaacaagcccctaaagcattcaatggcaaagactcaat
gacaccagagcctcatagtattcaagaaaaacatattagaaagatcctaa
gaggaagatcagaagggcaatgtttctttttgtgtgtgggggggtggggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_126536971_126538102
seq2: B6Ng01-127A17.b_47_1150

seq1  GAATTCCTATCAAATACCTTCGGATCAACTATAGGACTCACAACAGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCAAATACCTTCGGATCAACTATAGGACTCACAACAGTTCA  50

seq1  TAAATAGGAACTTGAAATTATTCCTTCATAGTTCTACAGAACTTCATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGGAACTTGAAATTATTCCTTCATAGTTCTACAGAACTTCATTTA  100

seq1  AGAAGTACATGCTATGTTGCTTAGTATTTGTTTCATTAATTCATATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACATGCTATGTTGCTTAGTATTTGTTTCATTAATTCATATTTTT  150

seq1  TTTAGTGTCTAATAGGTGTTTGGTTTTTTTTTTTTGGCTGAATAAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTCTAATAGGTGTTTGGTTTTTTTTTTTTGGCTGAATAAAATAT  200

seq1  GTCTCCTTACATGGAAAGGTTTATATTCTAGTTATGATTATGAATTTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTACATGGAAAGGTTTATATTCTAGTTATGATTATGAATTTACC  250

seq1  ACTCCTGCCCATGCTTACCTCACAGTACCTTATACAAACAGTCAGGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCCCATGCTTACCTCACAGTACCTTATACAAACAGTCAGGATTA  300

seq1  TTTAGCTCGAGGTATTTTAGGACAAACATTCTCAGATAATCATGGTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCGAGGTATTTTAGGACAAACATTCTCAGATAATCATGGTTATG  350

seq1  AAACATTTAGTTCTAGAGGCATACATTGTCAACCGTAAGGAAAATAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTAGTTCTAGAGGCATACATTGTCAACCGTAAGGAAAATAATAC  400

seq1  TCATTAACATTTATTGATATTTTTTACTGTATAAAGATTGTTCCATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACATTTATTGATATTTTTTACTGTATAAAGATTGTTCCATATTA  450

seq1  TCTGTCATTCATTCTTCATATCTTTTTGAAGTATATAATATTTTGAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATTCATTCTTCATATCTTTTTGAAGTATATAATATTTTGAAGGG  500

seq1  TAATTTGGGAAAATATTTCAATAGTTGAAGCTCCAGATGGTTAAGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGGAAAATATTTCAATAGTTGAAGCTCCAGATGGTTAAGTGAAT  550

seq1  CCCATAAGATCTGATAGAAAGACAGAACTGGGCATTGAGCCGGCAAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAGATCTGATAGAAAGACAGAACTGGGCATTGAGCCGGCAAAGTT  600

seq1  TGATTCTGGAGGTCTTTTCTGCATATAAATTCCATGCAATAAACCATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGGAGGTCTTTTCTGCATATAAATTCCATGCAATAAACCATTTT  650

seq1  GTAAACTTTAATGGAAGTGAAAATACAAATAATGTTAAATAAGTCAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTTAATGGAAGTGAAAATACAAATAATGTTAAATAAGTCAGTTT  700

seq1  CTCCCCTTGAAGTGACAATTGTAATTAATAGCTGTATCGGGAAATGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTGAAGTGACAATTGTAATTAATAGCTGTATCGGGAAATGATAG  750

seq1  TGCTAATTTAGTGATACTTAGAATCCTCTGAGTGTAGTTCCATAAGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATTTAGTGATACTTAGAATCCTCTGAGTGTAGTTCCATAAGTGAG  800

seq1  AAAAATCACCAGAATGAATACAAAAGATGGGTTTAAATGTTGCTTTATGA  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAATCACCAGAATGAATAC-AAAGATGGGTTTAAATGTTGCTTTATGA  849

seq1  ATCCTTATATAATTTTCAGAGAATAATTAGCTATTTTGAGGCTCAGGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATATAATTTTCAGAGAATAATTAGCTATTTTGAGGCTCAGGATA  899

seq1  CAAAGCTGATTTTAATAATATGTGCCTTATAAAGCAATTATTAATACTTA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAAGCTGATTTTAATAATATGTGCCTTATAAAGCAATTATT-ATACTTA  948

seq1  ACTAGAAAAACTAGTTGGCTGAGTAGGACTTGAAGTGTAAAGAAGGCACA  1000
      ||||| ||||||||||||||||||| |||||| ||||||||||  |||||
seq2  ACTAG-AAAACTAGTTGGCTGAGTA-GACTTG-AGTGTAAAGA--GCACA  993

seq1  GGCCAGTTTGGTGAATTTAATTCCTTCAAATAATAGAAGAATTTTTCTGT  1050
       |||||||||||| |||||    ||||||   ||||||||  ||||||||
seq2  -GCCAGTTTGGTG-ATTTA---TCTTCAA--TATAGAAGA--TTTTCTGT  1034

seq1  AGGAATTTTGAACTTTTGCCAAGACAGCTTTTTGACT-GTGGTGAATGGA  1099
      ||    |||||   |||||| ||||||| |||||||| |||||| |||  
seq2  AG---ATTTGA--CTTTGCC-AGACAGC-TTTTGACTGGTGGTG-ATG--  1074

seq1  TACAAAACCATACAAATCTGTACGTTCTTCTCA  1132
       |||||  |||||  ||||||||||||||||||
seq2  AACAAA--CATAC-CATCTGTACGTTCTTCTCA  1104

seq1: chrX_126680356_126680762
seq2: B6Ng01-127A17.g_67_473 (reverse)

seq1  CCCCCCACCCCCCCACACACAAAAAGAAACATTGCCCTTCTGATCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACCCCCCCACACACAAAAAGAAACATTGCCCTTCTGATCTTCCT  50

seq1  CTTAGGATCTTTCTAATATGTTTTTCTTGAATACTATGAGGCTCTGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATCTTTCTAATATGTTTTTCTTGAATACTATGAGGCTCTGGTGT  100

seq1  CATTGAGTCTTTGCCATTGAATGCTTTAGGGGCTTGTTACTAGTTGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTCTTTGCCATTGAATGCTTTAGGGGCTTGTTACTAGTTGGCTC  150

seq1  TACATTATTTCCCATGGAGTTGTTTCTTCCCTAGTCCTGAACAAACTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATTTCCCATGGAGTTGTTTCTTCCCTAGTCCTGAACAAACTCTG  200

seq1  TTATTAACCATGACATGAAGCGTTCATGTATACTAAGAGTGAAATAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACCATGACATGAAGCGTTCATGTATACTAAGAGTGAAATAGGAT  250

seq1  CTTGTTGCTTCAAAAACTCTTAATTTCTAGTTCTTACCATGAATAGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGCTTCAAAAACTCTTAATTTCTAGTTCTTACCATGAATAGCTCT  300

seq1  GAGAAGTGAATCATATCACTGTCTGTGGAAAACTGAAATGGCTACAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGAATCATATCACTGTCTGTGGAAAACTGAAATGGCTACAAAGT  350

seq1  TTTCTAGAAACCATTAGCCCTGTCTACATTGAACATAAAAGCTAAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGAAACCATTAGCCCTGTCTACATTGAACATAAAAGCTAAGAAAA  400

seq1  TGAATTC  407
      |||||||
seq2  TGAATTC  407