BAC Information

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BAC

Clone NameB6Ng01-129J06
ChromosomeX (Build37)
Map Location 159,280,445 - 159,409,592
singlet/doubletdoublet
Overlap geneLOC671250, Syap1, LOC100041607, Ctps2, S100g
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129J06.bB6Ng01-129J06.g
ACCDH931124DH931125
length1,051408
definitionDH931124|Mus musculus domesticus DNA, BAC clone: B6Ng01-129J06, 5' end.DH931125|Mus musculus domesticus DNA, BAC clone: B6Ng01-129J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,280,445 - 159,281,507)(159,409,180 - 159,409,592)
sequence
gaattccaggacagccagagctatacagagaaaccctgtctcgaaaaacc
aaaaataaataaataaataaaagagaaggctaggctgattccatgatagt
cttcaaattgatagttaaggagactaggcctaaatctctgtttcaaagaa
ctgggcaagttcaggcctcagaagctgccctgtcacctggcctgaggtaa
gaacaatgaatgggtcagcagcagtttccagacttcctcatctacttcct
cagtaacagtttccagacctccccagcaagtttccagccccaacacccca
gtaatgggatatccagaagatggacccagcaaattaacatagaggtcacg
taccctgggattccctagtgtgctttaaatcaggtctgcaagttcacttg
gttctcggtaatggggagacccaacatgctggacttgtgcagaataaaac
actctttgcatttacatactatttgagtctggggtgtcattctttggtga
atcatggacccttacattagtatgtgtctatatgatgtgttgtgtatgtg
tggtcatgtgtttaccacagcaaatatgtggaggtcaaaggacagcttat
ggggattggttccctttttgcaccatgggtttcagggactagattcaggt
catcaggcttgtttaacgagtgtgtttacaagatgcttagagagagtata
taaaaaggacttgaaagtgctgggcatggtggcacatgcctttaatccca
gcactcgggaggcagtggcaggcagatttctgagtttgaggccagcctgg
tctacagagtgagttccaggacttgtccctcctgatcccttctgctgact
tgtactgaggctgagctctggctgtccctgctagtcatgccaccactgtt
gatttgtgtttgagctgccactgctgacttctgtgaactgaactgctgat
ttccagaccaacacagatgggagttgcttcaaagacctttctaatagtca
ctcccccaacccccgccatctgcttcccactacctctgtaggtgtgggct
a
ttttccttcttttttgcttttcatttgttggtttggtttggtttggtttg
gtctggtttggcttagagagggttggtttgtaggttgttttgttttgttt
ttcaagacagggtttctctgtgtaccccttgaatgtcctagaactcactc
tgtagaccaagctcagagatttgcctgcctcctgcctcctgagtggcgaa
aaagcatgcaccaccactgccagcccacagaataaactttaaaaaacact
tcaaagaagaagtgctagctaacagaggagtcaatggagaagaaagatgt
tgaagatgaaagagtaagggataaccagacagtggcggcacatgccttta
atcccagcacttgggaggcagaggctggtggattgattcctatagtctga
ggccagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159280445_159281507
seq2: B6Ng01-129J06.b_48_1098

seq1  GAATTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAACC  50

seq1  AAAAATAAATAAATAAATAAAAGAGAAGGCTAGGCTGATTCCATGATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATAAATAAATAAAAGAGAAGGCTAGGCTGATTCCATGATAGT  100

seq1  CTTCAAATTGATAGTTAAGGAGACTAGGCCTAAATCTCTGTTTCAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATTGATAGTTAAGGAGACTAGGCCTAAATCTCTGTTTCAAAGAA  150

seq1  CTGGGCAAGTTCAGGCCTCAGAAGCTGCCCTGTCACCTGGCCTGAGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAAGTTCAGGCCTCAGAAGCTGCCCTGTCACCTGGCCTGAGGTAA  200

seq1  GAACAATGAATGGGTCAGCAGCAGTTTCCAGACTTCCTCATCTACTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGAATGGGTCAGCAGCAGTTTCCAGACTTCCTCATCTACTTCCT  250

seq1  CAGTAACAGTTTCCAGACCTCCCCAGCAAGTTTCCAGCCCCAACACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACAGTTTCCAGACCTCCCCAGCAAGTTTCCAGCCCCAACACCCCA  300

seq1  GTAATGGGATATCCAGAAGATGGACCCAGCAAATTAACATAGAGGTCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGGATATCCAGAAGATGGACCCAGCAAATTAACATAGAGGTCACG  350

seq1  TACCCTGGGATTCCCTAGTGTGCTTTAAATCAGGTCTGCAAGTTCACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGGATTCCCTAGTGTGCTTTAAATCAGGTCTGCAAGTTCACTTG  400

seq1  GTTCTCGGTAATGGGGAGACCCAACATGCTGGACTTGTGCAGAATAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCGGTAATGGGGAGACCCAACATGCTGGACTTGTGCAGAATAAAAC  450

seq1  ACTCTTTGCATTTACATACTATTTGAGTCTGGGGTGTCATTCTTTGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGCATTTACATACTATTTGAGTCTGGGGTGTCATTCTTTGGTGA  500

seq1  ATCATGGACCCTTACATTAGTATGTGTCTATATGATGTGTTGTGTATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGACCCTTACATTAGTATGTGTCTATATGATGTGTTGTGTATGTG  550

seq1  TGGTCATGTGTTTACCACAGCAAATATGTGGAGGTCAAAGGACAGCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGTGTTTACCACAGCAAATATGTGGAGGTCAAAGGACAGCTTAT  600

seq1  GGGGATTGGTTCCCTTTTTGCACCATGGGTTTCAGGGACTAGATTCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGGTTCCCTTTTTGCACCATGGGTTTCAGGGACTAGATTCAGGT  650

seq1  CATCAGGCTTGTTTAACGAGTGTGTTTACAAGATGCTTAGAGAGAGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGCTTGTTTAACGAGTGTGTTTACAAGATGCTTAGAGAGAGTATA  700

seq1  TAAAAAGGACTTGAAAGTGCTGGGCATGGTGGCACATGCCTTTAATCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGACTTGAAAGTGCTGGGCATGGTGGCACATGCCTTTAATCCCA  750

seq1  GCACTCGGGAGGCAGTGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGGGAGGCAGTGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGG  800

seq1  TCTACAGAGTGAGTTCCAGGACTTGTCCCTCCTGATCCCTTCTGCTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGACTTGTCCCTCCTGATCCCTTCTGCTGACT  850

seq1  TGTACTGAGGCTGAGCTCTGGCTGTCCCTGCTAGGTCATGCCACCACTGT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTACTGAGGCTGAGCTCTGGCTGTCCCTGCTA-GTCATGCCACCACTGT  899

seq1  TGATTTGTGTTTGAGCTGCCACTGCTGACTCCTGTGAACTGAACTGCTGA  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGATTTGTGTTTGAGCTGCCACTGCTGACTTCTGTGAACTGAACTGCTGA  949

seq1  TTTCCAGA-CAACACAGATGGGAGTTGCTCCAAAGGACCTTTCTAAATAG  999
      |||||||| |||||||||||||||||||| |||| ||||||||| |||||
seq2  TTTCCAGACCAACACAGATGGGAGTTGCTTCAAA-GACCTTTCT-AATAG  997

seq1  GTCCACTCCCCCCAACCCCCCGCCCATCCTCGCTTTCCCACTACCTCTGG  1049
         |||| ||||||||||||   |||||  |   |||||||||||||| |
seq2  --TCACT-CCCCCAACCCCC--GCCATCTGC---TTCCCACTACCTCT-G  1038

seq1  TAGGTGGTGGGCTA  1063
      ||||| ||||||||
seq2  TAGGT-GTGGGCTA  1051

seq1: chrX_159409180_159409592
seq2: B6Ng01-129J06.g_65_478 (reverse)

seq1  GGCTGGCCTCAAACT-CAGGAATCTATCCACCTGCCTCTGCCTCCCAAGT  49
      ||||||||||| |||  ||||||| ||||||| |||||||||||||||||
seq2  GGCTGGCCTCAGACTATAGGAATCAATCCACCAGCCTCTGCCTCCCAAGT  50

seq1  GCTGGGATTAAAGGCATGTGCCGCCACTGTCTGGTTATCCCTTACTCTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGCATGTGCCGCCACTGTCTGGTTATCCCTTACTCTTT  100

seq1  CATCTTCAACATCTTTCTTCTCCATTGACTCCTCTGTTAGCTAGCACTTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCAACATCTTTCTTCTCCATTGACTCCTCTGTTAGCTAGCACTTC  150

seq1  TTCTTTGAAGTGTTTTTTAAAGTTTATTCTGTGGGCTGGCAGTGGTGGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAAGTGTTTTTTAAAGTTTATTCTGTGGGCTGGCAGTGGTGGTG  200

seq1  CATGCTTTTTCGCCACTCAGGAGGCAGGAGGCAGGCAAATCTCTGAGCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTTTCGCCACTCAGGAGGCAGGAGGCAGGCAAATCTCTGAGCTT  250

seq1  GGTCTACAGAGTGAGTTCTAGGACATTCAAGGGGTACACAGAGAAACCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGAGTGAGTTCTAGGACATTCAAGGGGTACACAGAGAAACCCT  300

seq1  GTCTTGAAAAACAAAACAAAACAACCTACAAACCAACCCTCTCTAAGCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAAAAACAAAACAAAACAACCTACAAACCAACCCTCTCTAAGCCA  350

seq1  AACCAGACCAAACCAAACCAAACCAAACCAACAAATGAAAAGCAAAAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGACCAAACCAAACCAAACCAAACCAACAAATGAAAAGCAAAAAAG  400

seq1  AAGGAAAAGAATTC  413
      ||||||||||||||
seq2  AAGGAAAAGAATTC  414