BAC Information

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BAC

Clone NameB6Ng01-133A06
ChromosomeX (Build37)15 (Build37)
Map Location 75,053,027 - 75,054,18255,064,931 - 55,065,308
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC385474, EG436208, LOC546331, LOC100041212, Tbl1x, EG628893, LOC667606, Prkx
Downstream genePbsn, OTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672, Prrg1, LOC667679, LOC667684, 4921509A18Rik, LOC667700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133A06.bB6Ng01-133A06.g
ACCDH933677DH933678
length1,143549
definitionDH933677|Mus musculus domesticus DNA, BAC clone: B6Ng01-133A06, 5' end.DH933678|Mus musculus domesticus DNA, BAC clone: B6Ng01-133A06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,053,027 - 75,054,182)(55,064,931 - 55,065,308)
sequence
gaattcctctatgtcaaaaaaattatgggcagctttcaaaatttttaatg
aagttttgtttttagggaactaaaatacatagaatattcatgagcagaag
aatttacacacaaaaaaaataatggatttgttttttgtctttactctctt
gatagaaggaaattgggaaatgggaatcaaagagtaataaaatgactcat
ttagataagcacatatgtgcacatatggaaatgtagagggggcatggaat
acccccctctatcactgtccacctaaatttggaactcacatggtagccag
ctgtccaacatcctcccccaacctctccaatatcccgcccccatctccaa
gttcctgggaaccaaattctctcctgtcactgttattgagtaagtgtcac
agggactgaaatcctttatgtagatcaggcaggccaggagctcagagatt
cccttgcctctgcttcctaagtgctgggtaggatgaaagatgccattgag
ccttgctaaaagcacgttctcatccagtgacagagagtgtatttccactg
atttaatctatccaagggtattagttaccctacacattgcttcgacaaaa
tacttgagtcaagcactttaaaggaaagaagagtttgttttaagccacag
tttgaaggttccacacatcaggttgcggtaaggcatggtaaactgcatcc
ccaaatcccatggagggacatagacacagtttcatgaagtttttatagga
acatcaatcaaggttcttttcaaaatacatgagtgggaatattaagccag
gtggatgaagcagagccagaagtccttgcttttactaggccctttgctgt
gaaagaacaatttgatcaattagacagacaaaaaaaaatgttttattttt
gtttgttttttaaatctgtaagtcacaggacgtcaggtctgacatagtgg
ctttagggacatctatctagagagctgaaaattgtccaagaagaaatcat
aattaagctctgggactctcaggattccactctgcacattccacacacta
ccagtcatcagcttccagggtcagctacgttttggactttgctcagctgt
gtacagcaccactgctggctgggtacgaaagtccagacttcag
actcaaagcacttgtgcataaggcttgtttactaggttaggcgcagtgga
agccagcgccatcttataatggcgattgctcacagcacggctctccacag
ctggatcttgaggtagattccttcatgaggaaccaccatactgattacca
taatagctatgtggtaacacatccatttgcatattttctttagatgtgta
cccaattgtttaattgggttatctgttttcttgatatctactttcttttt
tttttttttttgtattttggataaacactgtgaaggcttgaataaaaatg
tcctcataggctcatatatttgagtgtttggcacccagttagtgaactat
ttatgaaggattagaatgggtggctttgtggcattattggaatgggtgtg
gccttgttggaggtatgtcactgggggtgagctttgaggtttatgcctct
atcataaagtgtctatatttttctctgataggttcagagtatcaacttta
caaaaggtcttgtatctattttgattttttttgtttgtttgtctgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_75053027_75054182
seq2: B6Ng01-133A06.b_44_1186

seq1  GAATTCCTCTATGTCAAAAAAATTATGGGCAGCTTTCAAAATTTTTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTATGTCAAAAAAATTATGGGCAGCTTTCAAAATTTTTAATG  50

seq1  AAGTTTTGTTTTTAGGGAACTAAAATACATAGAATATTCATGAGCAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGTTTTTAGGGAACTAAAATACATAGAATATTCATGAGCAGAAG  100

seq1  AATTTACACACAAAAAAAATAATGGATTTGTTTTTTGTCTTTACTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACACACAAAAAAAATAATGGATTTGTTTTTTGTCTTTACTCTCTT  150

seq1  GATAGAAGGAAATTGGGAAATGGGAATCAAAGAGTAATAAAATGACTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGGAAATTGGGAAATGGGAATCAAAGAGTAATAAAATGACTCAT  200

seq1  TTAGATAAGCACATATGTGCACATATGGAAATGTAGAGGGGGCATGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAAGCACATATGTGCACATATGGAAATGTAGAGGGGGCATGGAAT  250

seq1  ACCCCCCTCTATCACTGTCCACCTAAATTTGGAACTCACATGGTAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCTCTATCACTGTCCACCTAAATTTGGAACTCACATGGTAGCCAG  300

seq1  CTGTCCAACATCCTCCCCCAACCTCTCCAATATCCCGCCCCCATCTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAACATCCTCCCCCAACCTCTCCAATATCCCGCCCCCATCTCCAA  350

seq1  GTTCCTGGGAACCAAATTCTCTCCTGTCACTGTTATTGAGTAAGTGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGGAACCAAATTCTCTCCTGTCACTGTTATTGAGTAAGTGTCAC  400

seq1  AGGGACTGAAATCCTTTATGTAGATCAGGCAGGCCAGGAGCTCAGAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGAAATCCTTTATGTAGATCAGGCAGGCCAGGAGCTCAGAGATT  450

seq1  CCCTTGCCTCTGCTTCCTAAGTGCTGGGTAGGATGAAAGATGCCATTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCCTCTGCTTCCTAAGTGCTGGGTAGGATGAAAGATGCCATTGAG  500

seq1  CCTTGCTAAAAGCACGTTCTCATCCAGTGACAGAGAGTGTATTTCCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTAAAAGCACGTTCTCATCCAGTGACAGAGAGTGTATTTCCACTG  550

seq1  ATTTAATCTATCCAAGGGTATTAGTTACCCTACACATTGCTTCGACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCTATCCAAGGGTATTAGTTACCCTACACATTGCTTCGACAAAA  600

seq1  TACTTGAGTCAAGCACTTTAAAGGAAAGAAGAGTTTGTTTTAAGCCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAGTCAAGCACTTTAAAGGAAAGAAGAGTTTGTTTTAAGCCACAG  650

seq1  TTTGAAGGTTCCACACATCAGGTTGCGGTAAGGCATGGTAAACTGCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGTTCCACACATCAGGTTGCGGTAAGGCATGGTAAACTGCATCC  700

seq1  CCAAATCCCATGGAGGGACATAGACACAGTTTCATGAAGTTTTTATAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCCATGGAGGGACATAGACACAGTTTCATGAAGTTTTTATAGGA  750

seq1  ACATCAATCAAGGTTCTTTTCAAAATACATGAGTGGGAATATTAAGCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATCAAGGTTCTTTTCAAAATACATGAGTGGGAATATTAAGCCAG  800

seq1  GTGGATGAAGCAGAGCCAGAAGTCCTTGCTTTTACTAGGCCCTTTGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGAAGCAGAGCCAGAAGTCCTTGCTTTTACTAGGCCCTTTGCTGT  850

seq1  GAAAGAACAATTTGATCAAATTAGACAGACAAAAAAAAATGTTTTATTTT  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAAGAACAATTTGATC-AATTAGACAGACAAAAAAAAATGTTTTATTTT  899

seq1  TGTTTGTTTTTTAAATCTGTTAGTCACAGGACGTCAGGTCTGACATAGGT  950
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  TGTTTGTTTTTTAAATCTGTAAGTCACAGGACGTCAGGTCTGACATA-GT  948

seq1  GGC-TTAGGGACATCTATCTAGAGAGCTGAAAATTGTCCAAG-AGAAATC  998
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGCTTTAGGGACATCTATCTAGAGAGCTGAAAATTGTCCAAGAAGAAATC  998

seq1  ATAATTAGGCTCT-GGACTCTCAGGATTCCAACTCTGCACATCTCCACAC  1047
      ||||||| ||||| |||||||||||||||| ||||||||||| |||||||
seq2  ATAATTAAGCTCTGGGACTCTCAGGATTCC-ACTCTGCACAT-TCCACAC  1046

seq1  ACTACCAGTCAATCAGCCTCCCAGGTGTTCAGCTACGTTTTGGGAACTTT  1097
      |||||||||| |||||| |||  ||   |||||||||||||||  |||||
seq2  ACTACCAGTC-ATCAGCTTCCAGGG---TCAGCTACGTTTTGG--ACTTT  1090

seq1  GCTTCCAGCTGTAGTAACAGCACCACCTGCTGGCTGGGGACAGAAAGTCC  1147
      |||  ||||||| || ||||||||| |||||||||||| || ||||||||
seq2  GCT--CAGCTGT-GT-ACAGCACCA-CTGCTGGCTGGGTAC-GAAAGTCC  1134

seq1  AGACCTCAG  1156
      |||| ||||
seq2  AGACTTCAG  1143

seq1: chr15_55064931_55065308
seq2: B6Ng01-133A06.g_470_624 (reverse)

seq1  AAAACAAAACAAACAAACAAAAAAAACTGTGGTCTTGGCCTTTCCTATTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTGTGTGTCTTGTTTAGGGTTTTATTGCCGTGGAGAGACACTGACCAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGCAACCCATAAAAAGGAAAACATTTAATTGAGGCTGGTTTACAGTTTCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGTTCAGTCGATTGTTGTCATAGCAGGAAGCATGGCAGCATGCAGACA  200
                                               |  ||||||
seq2  ----------------------------------------AAAACAGACA  10

seq1  GACATACTGCTGGAGAAGGATTTGAGA---GTTCTATATCTTTATCTGAA  247
       ||| ||      | ||  | |  | |    | | | | |||| | | ||
seq2  AACAAAC------AAAAAAAATCAAAATAGATACAAGACCTTT-TGTAAA  53

seq1  GACAGCCAGAAAGAGACTGTCTTCCACAGGCAACAGGAGGAGACTCT-GA  296
      |           || ||| |   ||      | || ||| | | | | ||
seq2  G---------TTGATACTCTGAACC-----TATCA-GAGAAAAATATAGA  88

seq1  TTCCACACTGGGCAGAGTTTAGGCATAGGAAACCTCAAAGCCCACCCCTA  346
         |||  |  | | ||   ||||||   |||||||||||| |||||| |
seq2  ---CACTTTATG-ATAG---AGGCAT---AAACCTCAAAGCTCACCCCCA  128

seq1  TGGTGACACCTTTCCTCCAACAAGGCCACACC  378
        ||||||   | |||||||||||||||||||
seq2  --GTGACA---TACCTCCAACAAGGCCACACC  155