This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Parameter
BAC name
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Chromosome
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search by nearby gene name.
overlap
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Search Result
BAC
Clone Name
B6Ng01-133E16
Chromosome
X (Build37)
Map Location
56,288,135 - 56,289,171
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Zic3
,
LOC631581
,
LOC631621
,
4930550L24Rik
Downstream gene
Fgf13
,
F9
Link
Open Mouse BAC browser
Click to get alignment info.
name
Zic3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:22773
MGI:106676
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC631581
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:631581
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs, 10 Proteins
pseudo
: _no_value
name
LOC631621
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:631621
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
4930550L24Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:75352
MGI:1922602
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Fgf13
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14168
MGI:109178
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
F9
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14071
MGI:88384
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Zic3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:117414177
GeneID:22773
MGI:106676
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: zinc finger protein of the cerebellum 3
transcript_id
: NM_009575.2
name
4930550L24Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:125347713
GeneID:75352
MGI:1922602
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 4930550L24 gene
transcript_id
: NM_023774.2
name
Fgf13
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31542808
GeneID:14168
MGI:109178
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fibroblast growth factor 13
transcript_id
: NM_010200.2
name
F9
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:73661201
GeneID:14071
MGI:88384
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: coagulation factor IX
transcript_id
: NM_007979.1
name
4930550L24Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:12963817
GeneID:75352
MGI:1922602
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: novel MAGE family domain containing protein
product
: mage-k1
protein_id
: NP_076263.1
name
Fgf13
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31542809
CCDS:CCDS30157.1
GeneID:14168
MGI:109178
definition
GO_component
: GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS]
GO_function
: GO:0008083 - growth factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0030295 - protein kinase activator activity [Evidence ISS]
GO_process
: GO:0000165 - MAPKKK cascade [Evidence ISS]
codon_start
: 1
product
: fibroblast growth factor 13
protein_id
: NP_034330.2
name
F9
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:73661202
CCDS:CCDS30158.1
GeneID:14071
MGI:88384
definition
EC_number
: 3.4.21.22
GO_component
: GO:0005576 - extracellular region [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003803 - coagulation factor IXa activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO_process
: GO:0007596 - blood coagulation [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
codon_start
: 1
product
: coagulation factor IX
protein_id
: NP_032005.1
name
LOC631621
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:631621
definition
number
: 3
pseudo
: _no_value
name
LOC631621
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:631621
definition
number
: 2
pseudo
: _no_value
name
LOC631621
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:631621
definition
number
: 1
pseudo
: _no_value
name
LOC631581
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149271643
GeneID:631581
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs, 10 Proteins
product
: similar to Karyopherin (importin) alpha 2
pseudo
: _no_value
transcript_id
: XR_030972.1
clone name
MSMg01-386A17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-289N22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-292G15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-451H08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-057N20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-350G11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-075F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-485E10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-165J14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-402E07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-204I22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-204G22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-145L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154F20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-163I22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-261D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424L21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-464A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-266M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533N19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237A21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-341H13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-512J09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-328L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379A08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-150B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-414H24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-158G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-262F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-361D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-433B23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-410H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-090D09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378K02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-389O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-111C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-419C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-177I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351D08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-509N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237O07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-128A03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-157N21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280D14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059F20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-047M04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-078I04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-202F18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-129F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-081M21
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-523L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459M15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-037E23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-186M08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-235H18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-328J21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-001G01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-119E18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-048B10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-232B15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-301C17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-031J04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-243C23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-247O10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-163H16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-003C22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-166E11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-308D14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-263N06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-172P07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-036D15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-275N12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-133E16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-032A10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-296P21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-279D05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-327O13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-168I19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-278J07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-280N22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-184C13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-332I18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-194K12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-273P14
singlet/doublet
doublet
plural/unique
unique